PDB: 10097 件ウェブページステータス検索Chemie searchBIRD

---

1ENW	ELONGATION FACTOR TFIIS DOMAIN II 分子名称: TRANSCRIPTION ELONGATION FACTOR S-II 著者 Morin, P.E, Awrey, D.E, Edwards, A.M, Arrowsmith, C.H. 登録日 2000-03-21 公開日 2000-04-12 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Elongation factor TFIIS contains three structural domains: solution structure of domain II. Proc.Natl.Acad.Sci.USA, 93, 1996
283D	A CURVED RNA HELIX INCORPORATING AN INTERNAL LOOP WITH G-A AND A-A NON-WATSON-CRICK BASE PAIRING 分子名称: MANGANESE (II) ION, RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*C)-3') 著者 Baeyens, K.J, De Bondt, H.L, Pardi, A, Holbrook, S.R. 登録日 1996-09-03 公開日 1996-09-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing. Proc.Natl.Acad.Sci.USA, 93, 1996
4EDT	The structure of the S. aureus DnaG RNA Polymerase Domain bound to ppGpp and Manganese 分子名称: BENZAMIDINE, DNA primase, GUANOSINE-5',3'-TETRAPHOSPHATE, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-27 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.005 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EDR	The structure of the S. aureus DnaG RNA Polymerase Domain bound to UTP and Manganese 分子名称: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-27 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
7E15	Protein ternary complex working for DNA replication initiation 分子名称: DNA polymerase II small subunit, Gins51, SsDNA-specific exonuclease 著者 Oyama, T, Ishino, Y. 登録日 2021-01-30 公開日 2021-10-06 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome. Nucleic Acids Res., 50, 2022
4EDV	The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese 分子名称: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-27 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EDG	The structure of the S. aureus DnaG RNA Polymerase Domain bound to ATP and Manganese 分子名称: ADENOSINE-5'-TRIPHOSPHATE, BENZAMIDINE, DNA primase, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-27 公開日 2012-07-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EE1	The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese 分子名称: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-28 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EDK	The structure of the S. aureus DnaG RNA Polymerase Domain bound to GTP and Manganese 分子名称: BENZAMIDINE, DNA primase, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. 登録日 2012-03-27 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4CGV	First TPR of Spaghetti (RPAP3) bound to HSP90 peptide SRMEEVD 分子名称: GLYCEROL, HEAT SHOCK PROTEIN HSP 90-ALPHA, RNA POLYMERASE II-ASSOCIATED PROTEIN 3 著者 Roe, S.M, Pal, M. 登録日 2013-11-26 公開日 2014-05-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Structural Basis for Phosphorylation-Dependent Recruitment of Tel2 to Hsp90 by Pih1. Structure, 22, 2014
4CGW	Second TPR of Spaghetti (RPAP3) bound to HSP90 peptide SRMEEVD 分子名称: HEAT SHOCK PROTEIN HSP 90-ALPHA, RNA POLYMERASE II-ASSOCIATED PROTEIN 3 著者 Roe, S.M, Pal, M. 登録日 2013-11-26 公開日 2014-05-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.001 Å) 主引用文献 Structural Basis for Phosphorylation-Dependent Recruitment of Tel2 to Hsp90 by Pih1. Structure, 22, 2014
3HYF	Crystal structure of HIV-1 RNase H p15 with engineered E. coli loop and active site inhibitor 分子名称: 2-(3,4-dichlorobenzyl)-5,6-dihydroxypyrimidine-4-carboxylic acid, ACETATE ION, GLYCEROL, ... 著者 Lansdon, E.B, Kirschberg, T.A. 登録日 2009-06-22 公開日 2009-10-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 RNase H active site inhibitors of human immunodeficiency virus type 1 reverse transcriptase: design, biochemical activity, and structural information. J.Med.Chem., 52, 2009
1XJR	The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome 分子名称: MAGNESIUM ION, s2m RNA 著者 Robertson, M.P, Igel, H, Baertsch, R, Haussler, D, Ares Jr, M, Scott, W.G. 登録日 2004-09-24 公開日 2005-02-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The structure of a rigorously conserved RNA element within the SARS virus genome Plos Biol., 3, 2005
5BKH	The splicing activity and an alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein 分子名称: DNA polymerase II large subunit 著者 Li, Z, Li, H. 登録日 2021-03-19 公開日 2021-08-11 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 An alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein. Sci Rep, 11, 2021
5FLX	Mammalian 40S HCV-IRES complex 分子名称: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... 著者 Yamamoto, H, Collier, M, Loerke, J, Ismer, J, Schmidt, A, Hilal, T, Sprink, T, Yamamoto, K, Mielke, T, Burger, J, Shaikh, T.R, Dabrowski, M, Hildebrand, P.W, Scheerer, P, Spahn, C.M.T. 登録日 2015-10-28 公開日 2015-12-23 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA. Embo J., 34, 2015
1DYW	Biochemical and structural characterization of a divergent loop cyclophilin from Caenorhabditis elegans 分子名称: CYCLOPHILIN 3 著者 Dornan, J, Page, A.P, Taylor, P, Wu, S.Y, Winter, A.D, Husi, H, Walkinshaw, M.D. 登録日 2000-02-10 公開日 2000-06-22 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Biochemical and Structural Characterization of a Divergent Loop Cyclophilin from Caenorhabditis Elegans J.Biol.Chem., 274, 1999
7OM6	Thosea asigna virus RdRP domain in complex with RNA 分子名称: DI(HYDROXYETHYL)ETHER, RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3'), RNA-dependent RNA polymerase 著者 Ferrero, D.S, Falqui, M, Verdaguer, N. 登録日 2021-05-21 公開日 2021-07-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Snapshots of a Non-Canonical RdRP in Action. Viruses, 13, 2021
4S20	Structural basis for transcription reactivation by RapA 分子名称: 5'-D(P*AP*CP*GP*AP*CP*TP*GP*AP*GP*CP*CP*GP*AP*TP*G)-3', 5'-R(P*AP*UP*CP*GP*GP*CP*UP*CP*A)-3', DNA-directed RNA polymerase subunit alpha, ... 著者 Liu, B, Zuo, Y, Steitz, T.A. 登録日 2015-01-16 公開日 2015-02-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4.7 Å) 主引用文献 Structural basis for transcription reactivation by RapA. Proc.Natl.Acad.Sci.USA, 112, 2015
8XI2	Cryo-EM structure of the Chlamydomonas C* complex 分子名称: CWF21 domain-containing protein, Cdc5L, Crooked neck protein, ... 著者 Lu, Y, Zhan, X. 登録日 2023-12-19 公開日 2024-10-09 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structure of a step II catalytically activated spliceosome from Chlamydomonas reinhardtii. Embo J., 2024
6N4O	Human Argonaute2-miR-122 bound to a seed and supplementary paired target 分子名称: Protein argonaute-2, RNA (5'-R(*CP*CP*AP*UP*UP*GP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3') 著者 Sheu-Gruttadauria, J, MacRae, I.J. 登録日 2018-11-19 公開日 2019-05-08 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.899 Å) 主引用文献 Beyond the seed: structural basis for supplementary microRNA targeting by human Argonaute2. Embo J., 38, 2019
8G6R	Porcine epidemic diarrhea virus core polymerase complex 分子名称: RNA (5'-R(P*AP*AP*GP*AP*AP*GP*CP*UP*AP*UP*UP*AP*AP*AP*AP*UP*CP*AP*CP*A)-3'), RNA (5'-R(P*GP*GP*UP*UP*GP*UP*GP*AP*UP*UP*UP*UP*AP*AP*UP*AP*GP*CP*UP*U)-3'), ZINC ION, ... 著者 Anderson, T.K, Kirchdoerfer, R.N. 登録日 2023-02-15 公開日 2023-03-29 最終更新日 2023-10-04 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 An alphacoronavirus polymerase structure reveals conserved co-factor functions. Biorxiv, 2023
7Q2J	Quaternary Complex of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC Homer 分子名称: Elongin-B, Elongin-C, N-[5-[4-[[5-[[(2S)-3,3-dimethyl-1-[(2S,4R)-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-pentyl]carbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-1H-pyridine-3-carboxamide, ... 著者 Kraemer, A, Doelle, A, Schwalm, M.P, Adhikari, B, Wolf, E, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2021-10-25 公開日 2021-11-24 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Tracking the PROTAC degradation pathway in living cells highlights the importance of ternary complex measurement for PROTAC optimization. Cell Chem Biol, 30, 2023
5ZYQ	The Structure of Human PAF1/CTR9 complex 分子名称: RNA polymerase-associated protein CTR9 homolog,RNA polymerase II-associated factor 1 homolog 著者 Xie, Y, Zheng, M, Zhou, H, Long, J. 登録日 2018-05-28 公開日 2018-09-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.531 Å) 主引用文献 Paf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation. Nat Commun, 9, 2018
8URB	Porcine epidemic diarrhea virus complete core polymerase complex 分子名称: RNA (33-MER), RNA (55-MER), ZINC ION, ... 著者 Anderson, T.K, Kirchdoerfer, R.N. 登録日 2023-10-25 公開日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 An alphacoronavirus polymerase structure reveals conserved co-factor functions. Biorxiv, 2023
3ISD	Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch 分子名称: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', ... 著者 Beard, W.A, Shock, D.D, Batra, V.K, Pedersen, L.C, Wilson, S.H. 登録日 2009-08-25 公開日 2009-09-15 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 DNA polymerase beta substrate specificity: side chain modulation of the "A-rule". J.Biol.Chem., 284, 2009

<62636465666768697071727374757677>