6W5I
| Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class01) | 分子名称: | DNA (147-MER), Histone H2A, Histone H2B 1.1, ... | 著者 | Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. | 登録日 | 2020-03-13 | 公開日 | 2021-03-31 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (6.9 Å) | 主引用文献 | Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
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6W5M
| Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class02) | 分子名称: | DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... | 著者 | Park, S.H, Lee, Y.T, Ayoub, A, Dou, Y, Cho, U. | 登録日 | 2020-03-13 | 公開日 | 2021-03-31 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (4.6 Å) | 主引用文献 | Mechanism for DPY30 and ASH2L intrinsically disordered regions to modulate the MLL/SET1 activity on chromatin. Nat Commun, 12, 2021
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8R2M
| Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and an upstream-fork promoter fragment; State III conformation | 分子名称: | DNA 22-MER, DNA 31-MER, DNA-directed RNA polymerase subunit alpha, ... | 著者 | Koval, T, Krasny, L, Dohnalek, J, Kouba, T. | 登録日 | 2023-11-06 | 公開日 | 2024-10-02 | 実験手法 | ELECTRON MICROSCOPY (3.44 Å) | 主引用文献 | Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
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8QTI
| Mycobacterium smegnatis RNAP open promoter complex with SigmaA and RbpA | 分子名称: | DNA 50-mer non-template strand, DNA 50-mer template strand, DNA-directed RNA polymerase subunit alpha, ... | 著者 | Koval, T, Krasny, L, Dohnalek, J, Kouba, T. | 登録日 | 2023-10-12 | 公開日 | 2024-10-02 | 実験手法 | ELECTRON MICROSCOPY (3.09 Å) | 主引用文献 | Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
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8QU6
| Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD and an upstream-fork promoter fragment | 分子名称: | DNA 22-MER, DNA 31-MER, DNA-directed RNA polymerase subunit alpha, ... | 著者 | Koval, T, Krasny, L, Dohnalek, J, Kouba, T. | 登録日 | 2023-10-13 | 公開日 | 2024-10-02 | 実験手法 | ELECTRON MICROSCOPY (3.45 Å) | 主引用文献 | Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
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8R3M
| Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal, CO and PCh loop domain, and an upstream-fork promoter fragment; State III conformation | 分子名称: | DNA 22-MER, DNA 31-MER, DNA-directed RNA polymerase subunit alpha, ... | 著者 | Koval, T, Krasny, L, Dohnalek, J, Kouba, T. | 登録日 | 2023-11-09 | 公開日 | 2024-10-02 | 実験手法 | ELECTRON MICROSCOPY (3.49 Å) | 主引用文献 | Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
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2C35
| Subunits Rpb4 and Rpb7 of human RNA polymerase II | 分子名称: | DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19 KDA POLYPEPTIDE | 著者 | Meka, H, Werner, F, Cordell, S.C, Onesti, S, Brick, P. | 登録日 | 2005-10-04 | 公開日 | 2005-11-18 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal Structure and RNA Binding of the Rpb4/Rpb7 Subunits of Human RNA Polymerase II. Nucleic Acids Res., 33, 2005
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6B0D
| An E. coli DPS protein from ferritin superfamily | 分子名称: | DNA protection during starvation protein, FORMIC ACID, SODIUM ION | 著者 | Rui, W, Ruslan, S, Ronan, K, Adam, J.S. | 登録日 | 2017-09-14 | 公開日 | 2018-09-19 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallogr D Struct Biol, 74, 2018
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2GHO
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4GWQ
| Structure of the Mediator Head Module from S. cerevisiae in complex with the carboxy-terminal domain (CTD) of RNA Polymerase II Rpb1 subunit | 分子名称: | DNA-directed RNA polymerase II subunit RPB1, Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, ... | 著者 | Robinson, P.J.J, Bushnell, D.A, Trnka, M.J, Burlingame, A.L, Kornberg, R.D. | 登録日 | 2012-09-03 | 公開日 | 2012-10-31 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (4.5 Å) | 主引用文献 | Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II. Proc.Natl.Acad.Sci.USA, 109, 2012
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6F6W
| Structure of Mycobacterium smegmatis RNA polymerase core | 分子名称: | DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... | 著者 | Kouba, T, Barvik, I, Krasny, L. | 登録日 | 2017-12-06 | 公開日 | 2018-12-19 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.81 Å) | 主引用文献 | The Core and Holoenzyme Forms of RNA Polymerase fromMycobacterium smegmatis. J. Bacteriol., 201, 2019
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7EGD
| SCP promoter-bound TFIID-TFIIA in initial TBP-loading state | 分子名称: | DNA (72-MER), TATA-box-binding protein, Transcription initiation factor IIA subunit 1, ... | 著者 | Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y. | 登録日 | 2021-03-24 | 公開日 | 2021-05-12 | 実験手法 | ELECTRON MICROSCOPY (6.75 Å) | 主引用文献 | Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021
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7EGJ
| SCP promoter-bound TFIID-TFIIA in post TBP-loading state | 分子名称: | DNA (74-MER), TATA-box-binding protein, Transcription initiation factor IIA subunit 1, ... | 著者 | Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y. | 登録日 | 2021-03-24 | 公開日 | 2021-05-12 | 実験手法 | ELECTRON MICROSCOPY (8.64 Å) | 主引用文献 | Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021
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5LM5
| Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM2 peptide (region 435-451) | 分子名称: | DNA topoisomerase 2-associated protein PAT1, mRNA decapping protein 2 | 著者 | Charenton, C, Gaudon-Plesse, C, Fourati, Z, Taverniti, V, Back, R, Kolesnikova, O, Seraphin, B, Graille, M. | 登録日 | 2016-07-29 | 公開日 | 2017-08-16 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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8PV9
| Structure of DPS determined by cryoEM at 100 keV | 分子名称: | DNA protection during starvation protein | 著者 | McMullan, G, Naydenova, K, Mihaylov, D, Peet, M.J, Wilson, H, Yamashita, K, Dickerson, J.L, Chen, S, Cannone, G, Lee, Y, Hutchings, K.A, Gittins, O, Sobhy, M, Wells, T, El-Gomati, M.M, Dalby, J, Meffert, M, Schulze-Briese, C, Henderson, R, Russo, C.J. | 登録日 | 2023-07-17 | 公開日 | 2023-11-29 | 最終更新日 | 2023-12-06 | 実験手法 | ELECTRON MICROSCOPY (2.7 Å) | 主引用文献 | Structure determination by cryoEM at 100 keV. Proc.Natl.Acad.Sci.USA, 120, 2023
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8QN8
| Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State II | 分子名称: | DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... | 著者 | Koval, T, Krasny, L, Dohnalek, J, Kouba, T. | 登録日 | 2023-09-25 | 公開日 | 2024-10-02 | 実験手法 | ELECTRON MICROSCOPY (3.14 Å) | 主引用文献 | Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
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2M4K
| Solution structure of the delta subunit of RNA polymerase from Bacillus subtilis | 分子名称: | DNA-directed RNA polymerase subunit delta | 著者 | Papouskova, V, Novacek, J, Kaderavek, P, Zidek, L, Rabatinova, A, Sanderova, H, Krasny, L, Sklenar, V. | 登録日 | 2013-02-07 | 公開日 | 2013-10-09 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis. Chembiochem, 14, 2013
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7ZC4
| Cryo-EM structure of POLRMT mutant. | 分子名称: | DNA-directed RNA polymerase, mitochondrial | 著者 | Das, H, Hallberg, B.M. | 登録日 | 2022-03-25 | 公開日 | 2023-02-01 | 最終更新日 | 2024-07-24 | 実験手法 | ELECTRON MICROSCOPY (3.24 Å) | 主引用文献 | Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
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1DZF
| RPB5 from S.cerevisiae | 分子名称: | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 | 著者 | Todone, F, Weinzierl, R.O.J, Brick, P, Onesti, S. | 登録日 | 2000-02-25 | 公開日 | 2000-06-09 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal Structure of Rpb5, a Universal Eukaryotic RNA Polymerase Subunit and Transcription Factor Interaction Target Proc.Natl.Acad.Sci.USA, 97, 2000
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8Q3I
| Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State I | 分子名称: | DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... | 著者 | Koval, T, Krasny, L, Dohnalek, J, Kouba, T. | 登録日 | 2023-08-04 | 公開日 | 2024-08-14 | 実験手法 | ELECTRON MICROSCOPY (3.11 Å) | 主引用文献 | Molecular insights into RNA polymerase recycling by mycobacterial HelD To Be Published
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4U87
| Crystal structure of the Ba-soaked C2 crystal form of pMV158 replication initiator RepB (P3221 space group) | 分子名称: | BARIUM ION, CHLORIDE ION, MANGANESE (II) ION, ... | 著者 | Boer, D.R, Ruiz Maso, J.A, del Solar, G, Coll, M. | 登録日 | 2014-08-01 | 公開日 | 2015-08-26 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (3.8 Å) | 主引用文献 | Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158. Sci Rep, 6, 2016
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5FB2
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4ZUX
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6HT5
| Oct4/Sox2:UTF1 structure | 分子名称: | DNA (5'-D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G)-3'), POU domain, ... | 著者 | Vahokoski, J, Meusch, D, Groves, M, Pogenberg, V, Wilmanns, M. | 登録日 | 2018-10-03 | 公開日 | 2019-10-23 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (3.451 Å) | 主引用文献 | Oct4/Sox2:UTF1 structure To Be Published
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7OQT
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