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4XO5
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BU of 4xo5 by Molmil
Crystal Structure of E. coli Aminopeptidase N in complex with L-Glutamate
分子名称: Aminopeptidase N, GLUTAMIC ACID, GLYCEROL, ...
著者Addlagatta, A, Gumpena, R.
登録日2015-01-16
公開日2016-01-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal Structure of E. coli Aminopeptidase N in complex with L-Glutamate
To Be Published
5NEX
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BU of 5nex by Molmil
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine
分子名称: AGMATINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION
著者Huang, L, Wang, J, Lilley, D.M.J.
登録日2017-03-13
公開日2017-05-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
3D5K
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BU of 3d5k by Molmil
Crystal structure of the OprM channel in a non-symmetrical space group
分子名称: CHLORIDE ION, Outer membrane protein oprM, SODIUM ION
著者Phan, G, Broutin, I, Ducruix, A.
登録日2008-05-16
公開日2009-06-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and dynamical insights into the opening mechanism of P. aeruginosa OprM channel.
Structure, 18, 2010
6HJI
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BU of 6hji by Molmil
Xray structure of GLIC in complex with crotonate
分子名称: BUTENOIC ACID, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
著者Fourati, Z, Delarue, M.
登録日2018-09-03
公開日2019-09-18
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural evidence for the binding of monocarboxylates and dicarboxylates at pharmacologically relevant extracellular sites of a pentameric ligand-gated ion channel.
Acta Crystallogr D Struct Biol, 76, 2020
4RQ2
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BU of 4rq2 by Molmil
Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dCTP soaked with MnCl2 for 35 s
分子名称: ACETATE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), ...
著者Vyas, R, Reed, A.J, Suo, Z.
登録日2014-10-31
公開日2015-04-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc., 137, 2015
4RPX
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BU of 4rpx by Molmil
Precatalytic ternary complex of Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG) and dCTP in the presence of CaCl2
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, ACETATE ION, CALCIUM ION, ...
著者Vyas, R, Suo, Z.
登録日2014-10-31
公開日2015-04-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc., 137, 2015
3HWW
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BU of 3hww by Molmil
Crystal structure of menaquinone synthesis protein MenD from E. coli in complex with oxoglutarate
分子名称: 2-OXOGLUTARIC ACID, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase, CHLORIDE ION, ...
著者Priyadarshi, A, Hwang, K.Y.
登録日2009-06-19
公開日2009-11-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural and functional analysis of Vitamin K2 synthesis protein MenD.
Biochem.Biophys.Res.Commun., 388, 2009
5DYN
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BU of 5dyn by Molmil
B. fragilis cysteine protease
分子名称: CHLORIDE ION, Putative peptidase, SODIUM ION
著者Choi, V.M, Herrou, J, Hecht, A.L, Turner, J.R, Crosson, S, Bubeck Wardenburg, J.
登録日2015-09-24
公開日2016-03-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Activation of Bacteroides fragilis toxin by a novel bacterial protease contributes to anaerobic sepsis in mice.
Nat. Med., 22, 2016
5MIW
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BU of 5miw by Molmil
X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uracil at 1.28 A.
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
著者Prokofev, I.I, Lashkov, A.A, Balaev, V.V, Gabdoulkhakov, A.G, Betzel, C, Mikhailov, A.M.
登録日2016-11-29
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uracil at 1.28 A.
To Be Published
4MVJ
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BU of 4mvj by Molmil
2.85 Angstrom Resolution Crystal Structure of Glyceraldehyde 3-phosphate Dehydrogenase A (gapA) from Escherichia coli Modified by Acetyl Phosphate.
分子名称: ACETATE ION, ACETYLPHOSPHATE, CHLORIDE ION, ...
著者Minasov, G, Kuhn, M, Dubrovska, I, Winsor, J, Shuvalova, L, Grimshaw, S, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2013-09-24
公開日2014-04-23
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural, kinetic and proteomic characterization of acetyl phosphate-dependent bacterial protein acetylation.
Plos One, 9, 2014
6HY5
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BU of 6hy5 by Molmil
THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL MUTANT Q193C
分子名称: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
著者Hu, H.D, Delarue, M.
登録日2018-10-19
公開日2018-12-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6SC4
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BU of 6sc4 by Molmil
Gamma-Carbonic Anhydrase from the Haloarchaeon Halobacterium sp.
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CADMIUM ION, ...
著者Vogler, M, Karan, R, Renn, D, Vancea, A, Vielberg, V.-T, Groetzinger, S.W, DasSarma, P, Das Sarma, S, Eppinger, J, Groll, M, Rueping, M.
登録日2019-07-23
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure and Active Site Engineering of a Halophilic gamma-Carbonic Anhydrase.
Front Microbiol, 11, 2020
4RPY
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BU of 4rpy by Molmil
Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dCTP soaked with MgCl2 for 30 s
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, ACETATE ION, CHLORIDE ION, ...
著者Vyas, R, Suo, Z.
登録日2014-10-31
公開日2015-04-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc., 137, 2015
3QM1
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BU of 3qm1 by Molmil
CRYSTAL STRUCTURE OF THE LACTOBACILLUS JOHNSONII CINNAMOYL ESTERASE LJ0536 S106A MUTANT IN COMPLEX WITH ETHYLFERULATE, Form II
分子名称: CHLORIDE ION, Cinnamoyl esterase, SODIUM ION, ...
著者Stogios, P.J, Lai, K.K, Vu, C, Xu, X, Cui, H, Molloy, S, Gonzalez, C.F, Yakunin, A, Savchenko, A.
登録日2011-02-03
公開日2011-08-31
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.817 Å)
主引用文献An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase
Plos One, 6, 2011
3DIO
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BU of 3dio by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, IRIDIUM HEXAMINE SOAK
分子名称: IRIDIUM HEXAMMINE ION, LYSINE, PENTAETHYLENE GLYCOL, ...
著者Serganov, A.A.
登録日2008-06-20
公開日2008-09-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
6CHR
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BU of 6chr by Molmil
Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)
分子名称: MAGNESIUM ION, RNA (5'-R(P*UP*GP*UP*UP*UP*AP*UP*UP*AP*AP*AP*AP*A)-3'), RNA (621-MER), ...
著者Chan, R.T, Peters, J.K, Robart, A.R, Wiryaman, T, Rajashankar, K.R, Toor, N.
登録日2018-02-22
公開日2018-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Structural basis for the second step of group II intron splicing.
Nat Commun, 9, 2018
5VBX
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BU of 5vbx by Molmil
Crystal structure of holo-[acyl-carrier-protein] synthase (AcpS) from Escherichia coli
分子名称: 1,2-ETHANEDIOL, Holo-[acyl-carrier-protein] synthase, SODIUM ION
著者Marcella, A.M, Barb, A.W.
登録日2017-03-30
公開日2017-11-01
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structure, High Affinity, and Negative Cooperativity of the Escherichia coli Holo-(Acyl Carrier Protein):Holo-(Acyl Carrier Protein) Synthase Complex.
J. Mol. Biol., 429, 2017
5MFR
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BU of 5mfr by Molmil
The crystal structure of E. coli Aminopeptidase N in complex with 7-amino-5,7,8,9-tetrahydrobenzocyclohepten-6-one
分子名称: Aminopeptidase N, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Peng, G, Olieric, V, McEwen, A.G, Schmitt, C, Albrecht, S, Cavarelli, J, Tarnus, C.
登録日2016-11-18
公開日2017-04-19
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Insight into the remarkable affinity and selectivity of the aminobenzosuberone scaffold for the M1 aminopeptidases family based on structure analysis.
Proteins, 85, 2017
3MV1
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BU of 3mv1 by Molmil
E.Coli (lacZ) beta-galactosidase (R599A) in complex with Guanidinium
分子名称: Beta-galactosidase, DIMETHYL SULFOXIDE, GUANIDINE, ...
著者Dugdale, M.L, Vance, M, Driedger, M.L, Nibber, A, Tran, A, Huber, R.E.
登録日2010-05-03
公開日2011-03-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Importance of Arg-599 of b-galactosidase (Escherichia coli) as an anchor for the open conformations of Phe-601 and the active-site loop
Biochem.Cell Biol., 88, 2010
3MVK
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BU of 3mvk by Molmil
The Crystal Structure of FucU from Bifidobacterium longum to 1.65A
分子名称: GLYCEROL, SODIUM ION, TRIETHYLENE GLYCOL, ...
著者Stein, A.J, Xu, X, Cui, H, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2010-05-04
公開日2010-05-12
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The Crystal Structure of FucU from Bifidobacterium longum to 1.65A
To be Published
4D1J
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BU of 4d1j by Molmil
The structure of the GH35 beta-galactosidase Bgl35A from Cellvibrio japonicas in complex with 1-Deoxygalactonojirimycin
分子名称: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol, ACETATE ION, BETA-GALACTOSIDASE, ...
著者Larsbrink, J, Thompson, A.J, Lundqvist, M, Gardner, J.G, Davies, G.J, Brumer, H.
登録日2014-05-02
公開日2014-05-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A Complex Gene Locus Enables Xyloglucan Utilization in the Model Saprophyte Cellvibrio Japonicus.
Mol.Microbiol., 94, 2014
4EIB
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BU of 4eib by Molmil
Crystal Structure of Circular Permuted CBM21 (CP90) Gives Insight into the Altered Selectivity on Carbohydrate Binding.
分子名称: ACETATE ION, AMMONIUM ION, CHLORIDE ION, ...
著者Stephen, P, Cheng, K.C, Lyu, P.C.
登録日2012-04-05
公開日2012-12-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Crystal structure of circular permuted RoCBM21 (CP90): dimerisation and proximity of binding sites
Plos One, 7, 2012
2QEX
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BU of 2qex by Molmil
Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
分子名称: 23S ribosomal RNA, 50S ribosomal protein L10e, 50S ribosomal protein L11P, ...
著者Schroeder, S.J, Blaha, G.
登録日2007-06-26
公開日2008-09-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit.
Antimicrob.Agents Chemother., 51, 2007
5EYU
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BU of 5eyu by Molmil
1.72 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) P449M point mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Betaine aldehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Halavaty, A.S, Minasov, G, Chen, C, Joo, J.C, Yakunin, A.F, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2015-11-25
公開日2015-12-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献1.72 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) P449M point mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289
To Be Published
5AXO
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BU of 5axo by Molmil
Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to Hydrolyzed Meropenem
分子名称: (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Metallo-beta-lactamase, ...
著者Wachino, J, Arakawa, Y.
登録日2015-07-31
公開日2016-05-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to Hydrolyzed Meropenem
To Be Published

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件を2024-08-07に公開中

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