5H12
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1JQJ
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![BU of 1jqj by Molmil](/molmil-images/mine/1jqj) | Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex | 分子名称: | DNA polymerase III, beta chain, delta subunit | 著者 | Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. | 登録日 | 2001-08-07 | 公開日 | 2001-11-07 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
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1TV9
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![BU of 1tv9 by Molmil](/molmil-images/mine/1tv9) | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | 分子名称: | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... | 著者 | Krahn, J.M, Beard, W.M, Wilson, S.H. | 登録日 | 2004-06-29 | 公開日 | 2004-11-23 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | STRUCTURAL INSIGHTS INTO DNA POLYMERASE BETA DETERRENTS FOR MISINCORPORATION SUPPORT OF AN INDUCED-FIT MECHANISM FOR FIDELITY Structure, 12, 2004
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1TVA
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![BU of 1tva by Molmil](/molmil-images/mine/1tva) | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE THYMIDINE AND INCOMING CYTIDINE | 分子名称: | 5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... | 著者 | Krahn, J.M, Beard, W.A, Wilson, S.H. | 登録日 | 2004-06-29 | 公開日 | 2004-11-23 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural insights into DNA polymerase Beta deterrents for misincorporation support an induced-fit mechanism for fidelity Structure, 12, 2004
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1FGU
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7T23
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7T22
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7QVB
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7QA9
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![BU of 7qa9 by Molmil](/molmil-images/mine/7qa9) | 10bp DNA/DNA duplex | 分子名称: | DNA (5'-D(*CP*CP*AP*TP*TP*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3') | 著者 | Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C. | 登録日 | 2021-11-16 | 公開日 | 2022-11-16 | 最終更新日 | 2024-06-19 | 実験手法 | SOLUTION NMR | 主引用文献 | 4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA. Angew.Chem.Int.Ed.Engl., 61, 2022
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1LQ1
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![BU of 1lq1 by Molmil](/molmil-images/mine/1lq1) | DNA Complexed Structure of the Key Transcription Factor Initiating Development in Sporulation Bacteria | 分子名称: | 5'-D(*AP*CP*AP*AP*AP*AP*TP*TP*CP*GP*AP*CP*AP*CP*GP*A)-3', 5'-D(*TP*TP*CP*GP*TP*GP*TP*CP*GP*AP*AP*TP*TP*TP*TP*G)-3', Stage 0 sporulation protein A | 著者 | Zhao, H, Msadek, T, Zapf, J, Madhusudan, Hoch, J.A, Varughese, K.I. | 登録日 | 2002-05-08 | 公開日 | 2002-08-23 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | DNA complexed structure of the key transcription factor initiating development in sporulating bacteria. Structure, 10, 2002
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1ZJN
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![BU of 1zjn by Molmil](/molmil-images/mine/1zjn) | Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... | 著者 | Batra, V.K, Beard, W.A, Shock, D.D, Pedersen, L.C, Wilson, S.H. | 登録日 | 2005-04-29 | 公開日 | 2005-08-16 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.61 Å) | 主引用文献 | Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate. STRUCTURE, 13, 2005
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4FM2
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6QXT
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![BU of 6qxt by Molmil](/molmil-images/mine/6qxt) | Cas1-Cas2-Csn2-DNA dimer complex from the Type II-A CRISPR-Cas system | 分子名称: | CALCIUM ION, CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, ... | 著者 | Wilkinson, M, Drabavicius, G, Silanskas, A, Gasiunas, G, Siksnys, V, Wigley, D.B. | 登録日 | 2019-03-08 | 公開日 | 2019-05-08 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (8.9 Å) | 主引用文献 | Structure of the DNA-Bound Spacer Capture Complex of a Type II CRISPR-Cas System. Mol.Cell, 75, 2019
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4FLZ
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6GIS
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![BU of 6gis by Molmil](/molmil-images/mine/6gis) | Structural basis of human clamp sliding on DNA | 分子名称: | DNA (5'-D(P*AP*TP*AP*CP*GP*AP*TP*GP*GP*G)-3'), DNA (5'-D(P*CP*CP*CP*AP*TP*CP*GP*TP*AP*T)-3'), Proliferating cell nuclear antigen | 著者 | De March, M, Merino, N, Barrera-Vilarmau, S, Crehuet, R, Onesti, S, Blanco, F.J, De Biasio, A. | 登録日 | 2018-05-15 | 公開日 | 2018-05-30 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (2.82 Å) | 主引用文献 | Structural basis of human PCNA sliding on DNA. Nat Commun, 8, 2017
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8TP8
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![BU of 8tp8 by Molmil](/molmil-images/mine/8tp8) | Structure of the C. crescentus WYL-activator, DriD, bound to ssDNA and cognate DNA | 分子名称: | DNA (5'-D(*AP*TP*AP*CP*GP*AP*CP*AP*GP*TP*AP*AP*CP*TP*GP*TP*CP*GP*TP*AP*T)-3'), DNA (5'-D(*AP*TP*AP*CP*GP*AP*CP*AP*GP*TP*TP*AP*CP*TP*GP*TP*CP*GP*TP*AP*T)-3'), DNA (5'-D(P*GP*TP*C)-3'), ... | 著者 | Schumacher, M.A. | 登録日 | 2023-08-04 | 公開日 | 2023-11-29 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.74 Å) | 主引用文献 | Structure of the WYL-domain containing transcription activator, DriD, in complex with ssDNA effector and DNA target site. Nucleic Acids Res., 52, 2024
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3RMA
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![BU of 3rma by Molmil](/molmil-images/mine/3rma) | Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol | 分子名称: | DNA (5'-D(*CP*GP*AP*(CTG)*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*CP*A)-3'), DNA polymerase | 著者 | Aller, P, Duclos, S, Wallace, S.S, Doublie, S. | 登録日 | 2011-04-20 | 公開日 | 2011-08-10 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.84 Å) | 主引用文献 | A crystallographic study of the role of sequence context in thymine glycol bypass by a replicative DNA polymerase serendipitously sheds light on the exonuclease complex. J.Mol.Biol., 412, 2011
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7FJ2
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2ZKD
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![BU of 2zkd by Molmil](/molmil-images/mine/2zkd) | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | 分子名称: | 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*DCP*DTP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DTP*DGP*DC)-3'), ... | 著者 | Arita, K, Ariyoshi, M, Tochio, H, Nakamura, Y, Shirakawa, M. | 登録日 | 2008-03-19 | 公開日 | 2008-09-09 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism Nature, 455, 2008
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1PUE
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![BU of 1pue by Molmil](/molmil-images/mine/1pue) | PU.1 ETS DOMAIN-DNA COMPLEX | 分子名称: | DNA (5'-D(*AP*AP*AP*AP*AP*GP*GP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*CP*CP*TP*TP*TP*T)-3'), PROTEIN (TRANSCRIPTION FACTOR PU.1 (TF PU.1)) | 著者 | Kodandapani, R, Pio, F, Ni, C.Z, Piccialli, G, Klemsz, M, McKercher, S, Maki, R.A, Ely, K.R. | 登録日 | 1996-07-08 | 公開日 | 1997-02-12 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex. Nature, 380, 1996
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1SVC
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![BU of 1svc by Molmil](/molmil-images/mine/1svc) | NFKB P50 HOMODIMER BOUND TO DNA | 分子名称: | DNA (5'-D(*AP*GP*AP*TP*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*CP*TP*A P*GP*A)-3'), PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) | 著者 | Mueller, C.W, Harrison, S.C. | 登録日 | 1995-11-27 | 公開日 | 1996-06-10 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structure of the NF-kappa B p50 homodimer bound to DNA. Nature, 373, 1995
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6AMQ
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7Q2X
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![BU of 7q2x by Molmil](/molmil-images/mine/7q2x) | Cryo-EM structure of clamped S.cerevisiae condensin-DNA complex (Form I) | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Condensin complex subunit 1, ... | 著者 | Lee, B.-G, Rhodes, J, Lowe, J. | 登録日 | 2021-10-26 | 公開日 | 2022-03-23 | 最終更新日 | 2022-04-13 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Clamping of DNA shuts the condensin neck gate. Proc.Natl.Acad.Sci.USA, 119, 2022
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7Q2Y
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![BU of 7q2y by Molmil](/molmil-images/mine/7q2y) | Cryo-EM structure of clamped S.cerevisiae condensin-DNA complex (form II) | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Condensin complex subunit 1, ... | 著者 | Lee, B.-G, Rhodes, J, Lowe, J. | 登録日 | 2021-10-26 | 公開日 | 2022-03-23 | 最終更新日 | 2023-09-13 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Clamping of DNA shuts the condensin neck gate. Proc.Natl.Acad.Sci.USA, 119, 2022
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8AC8
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![BU of 8ac8 by Molmil](/molmil-images/mine/8ac8) | The nucleoprotein complex of Rep protein with DUE ssDNA | 分子名称: | DNA (5'-D(*AP*TP*TP*TP*TP*TP*AP*TP*A)-3'), Replication initiation protein | 著者 | Nowacka, M, Wegrzyn, K, Oliwa, M, Konieczny, I. | 登録日 | 2022-07-05 | 公開日 | 2023-09-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Rep protein accommodates together dsDNA and ssDNA which enables a loop-back mechanism to plasmid DNA replication initiation. Nucleic Acids Res., 51, 2023
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