PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8P0N	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex shallow conformation 分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... 著者 Grimm, C, Jungwirth, S, Fischer, U. 登録日 2023-05-10 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
8WA1	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2 分子名称: DNA (24-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Wu, X.X, Zhang, Y. 登録日 2023-09-06 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8WA0	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1 分子名称: DNA (48-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Wu, X.X, Zhang, Y. 登録日 2023-09-06 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
4P3V	Crystal structure of the E. coli HU beta2 protein 分子名称: DNA-binding protein HU-beta, LITHIUM ION 著者 Le Meur, R, Coste, F, Castaing, B. 登録日 2014-03-10 公開日 2015-04-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Crystal structure of the E. coli HU beta2 protein To Be Published
6EYD	Structure of Mycobacterium smegmatis RNA polymerase Sigma-A holoenzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Kouba, T, Barvik, I, Krasny, L. 登録日 2017-11-11 公開日 2018-12-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.22 Å) 主引用文献 The Core and Holoenzyme Forms of RNA Polymerase fromMycobacterium smegmatis. J. Bacteriol., 201, 2019
8W9Z	The cryo-EM structure of the Nicotiana tabacum PEP-PAP 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta'', ... 著者 Wu, X.X, Zhang, Y. 登録日 2023-09-06 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8E6Z	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, dC75 rut mimic RNA, Mg-ADP-BeF3, and NusG; TEC part 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Wang, C, Ebright, R.H. 登録日 2022-08-23 公開日 2022-09-07 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E5O	Escherichia coli Rho-dependent transcription pre-termination complex containing 24 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Wang, C. 登録日 2022-08-22 公開日 2022-09-07 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E3F	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Wang, C. 登録日 2022-08-17 公開日 2022-09-07 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (6.5 Å) 主引用文献 Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E5K	Escherichia coli Rho-dependent transcription pre-termination complex containing 21 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Wang, C. 登録日 2022-08-22 公開日 2022-09-07 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8E6X	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, lambda-tR1 rut RNA, Mg-ADP-BeF3, and NusG; TEC part 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Wang, C. 登録日 2022-08-23 公開日 2022-09-07 最終更新日 2023-02-22 実験手法 ELECTRON MICROSCOPY (4.27 Å) 主引用文献 Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
6MGN	mouse Id1 (51-104) - human hE47 (348-399) complex 分子名称: DNA-binding protein inhibitor ID-1, Transcription factor E2-alpha 著者 Benezra, R, Pavletich, N.P, Gall, A.-L, Goldgur, Y. 登録日 2018-09-14 公開日 2019-09-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 A Small-Molecule Pan-Id Antagonist Inhibits Pathologic Ocular Neovascularization. Cell Rep, 29, 2019
3H0G	RNA Polymerase II from Schizosaccharomyces pombe 分子名称: DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Spahr, H, Calero, G, Bushnell, D.A, Kornberg, R.D. 登録日 2009-04-09 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.65 Å) 主引用文献 Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution. Proc.Natl.Acad.Sci.USA, 106, 2009
7PZR	Cryo-EM structure of POLRMT in free form. 分子名称: DNA-directed RNA polymerase, mitochondrial 著者 Das, H, Hallberg, B.M. 登録日 2021-10-13 公開日 2022-11-16 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization. Cell, 185, 2022
5O8K	Crystal structure of mammalian Rev7 in complex with Rev3 1875-1895 分子名称: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B 著者 Emamzadah, S, Tropia, L, Huber, F, Halazonetis, T. 登録日 2017-06-13 公開日 2018-06-27 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of mammalian Rev7 in complex with Rev3 1875-1895 To Be Published
7CMP	parE in complex with AMPPNP 分子名称: DNA topoisomerase 4 subunit B, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Jung, H.Y, Heo, Y.-S. 登録日 2020-07-28 公開日 2021-08-04 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.886 Å) 主引用文献 Crystal structure of parE in complex with AMPPNP To Be Published
3LU0	Molecular model of Escherichia coli core RNA polymerase 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Darst, S.A. 登録日 2010-02-16 公開日 2010-09-29 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (11.2 Å) 主引用文献 Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. Plos Biol., 8, 2010
4WA8	Methanopyrus Kandleri FEN-1 nuclease 分子名称: CHLORIDE ION, Flap endonuclease 1 著者 Shah, S, Dunten, P, Horton, N.C. 登録日 2014-08-28 公開日 2014-11-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure and specificity of FEN-1 from Methanopyrus kandleri. Proteins, 83, 2015
4QIW	Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis 分子名称: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... 著者 Jun, S.-H, Murakami, K.S. 登録日 2014-06-02 公開日 2014-10-08 最終更新日 2014-11-26 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration. Nat Commun, 5, 2014
7YCX	The structure of INTAC-PEC complex 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, ... 著者 Zheng, H, Jin, Q, Wang, X, Qi, Y, Liu, W, Ren, Y, Zhao, D, Chen, F.X, Cheng, J, Chen, X, Xu, Y. 登録日 2022-07-02 公開日 2023-03-15 最終更新日 2023-09-27 実験手法 ELECTRON MICROSCOPY (4.18 Å) 主引用文献 Structural basis of INTAC-regulated transcription. Protein Cell, 14, 2023
5FB2	S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide 分子名称: DNA (5'-D(*CP*GP*TP*TP*A)-3'), GLYCEROL, MarR family regulatory protein 著者 Birukou, I, Newman, C.E, Brennan, R.G. 登録日 2015-12-13 公開日 2016-12-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 S. aureus MepR F27L Mutant bound to oligodeoxyribonucleotide To Be Published
6ASG	Crystal structure of Thermus thermophilus RNA polymerase core enzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Liu, Y, Lin, W, Ying, R, Ebright, R.H. 登録日 2017-08-24 公開日 2018-04-11 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Mol. Cell, 70, 2018
9COJ	SH3-like tandem domain of human KIN protein 分子名称: DNA/RNA-binding protein KIN17 著者 de Lourenco, I.O, Fossey, M.A, Souza, F.P, Seixas, F.A.V, Fernandez, M.A, Almeida, F.C.L, Caruso, I.P. 登録日 2024-07-16 公開日 2024-07-31 実験手法 SOLUTION NMR 主引用文献 Solution structure of SH3-like tandem domain of human KIN protein and its interaction with RNA homo-oligonucleotides To Be Published
5M3J	Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD 分子名称: DNA-directed RNA polymerase subunit, Polymerase acidic protein, Polymerase basic protein 2, ... 著者 Lukarska, M, Pflug, A, Cusack, S. 登録日 2016-10-14 公開日 2016-12-21 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis of an essential interaction between influenza polymerase and Pol II CTD. Nature, 541, 2017
7EGD	SCP promoter-bound TFIID-TFIIA in initial TBP-loading state 分子名称: DNA (72-MER), TATA-box-binding protein, Transcription initiation factor IIA subunit 1, ... 著者 Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y. 登録日 2021-03-24 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (6.75 Å) 主引用文献 Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021

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