PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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6LND	Crystal structure of transposition protein TniQ 分子名称: ZINC ION, transposition protein TniQ 著者 Wang, B, Xu, W, Yang, H. 登録日 2019-12-28 公開日 2020-02-19 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Structural basis of a Tn7-like transposase recruitment and DNA loading to CRISPR-Cas surveillance complex. Cell Res., 30, 2020
1ENN	SOLVENT ORGANIZATION IN AN OLIGONUCLEOTIDE CRYSTAL: THE STRUCTURE OF D(GCGAATTCG)2 AT ATOMIC RESOLUTION 分子名称: CHLORIDE ION, DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*G)-3'), MAGNESIUM ION, ... 著者 Soler-Lopez, M, Malinina, L, Subirana, J.A. 登録日 2000-03-21 公開日 2000-05-03 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (0.89 Å) 主引用文献 Solvent organization in an oligonucleotide crystal. The structure of d(GCGAATTCG)2 at atomic resolution. J.Biol.Chem., 275, 2000
380D	BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES 分子名称: 2'-BROMO-4'-EPIDAUNORUBICIN, DNA (5'-D(*CP*GP*(G49)P*(CBR)P*CP*G)-3') 著者 Dutta, R, Gao, Y.-G, Priebe, W, Wang, A.H.-J. 登録日 1998-02-18 公開日 1998-07-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes. Nucleic Acids Res., 26, 1998
6EXT	Crystal structure of the DNA binding domain of fission yeast Sap1 分子名称: Switch-activating protein 1 著者 Ekundayo, B, Joergensen, M, Schalch, T. 登録日 2017-11-09 公開日 2018-11-28 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of the replication regulator Sap1 reveals functionally important interfaces. Sci Rep, 8, 2018
2I5J	Crystal structure of HIV-1 reverse transcriptase (RT) in complex with DHBNH, an RNASE H inhibitor 分子名称: (E)-3,4-DIHYDROXY-N'-[(2-METHOXYNAPHTHALEN-1-YL)METHYLENE]BENZOHYDRAZIDE, MAGNESIUM ION, Reverse transcriptase/ribonuclease H P51 subunit, ... 著者 Himmel, D.M, Sarafianos, S.G, Knight, J.L, Levy, R.M, Arnold, E. 登録日 2006-08-24 公開日 2006-12-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 HIV-1 reverse transcriptase structure with RNase H inhibitor dihydroxy benzoyl naphthyl hydrazone bound at a novel site. Acs Chem.Biol., 1, 2006
6EXU	Crystal structure of the DNA binding domain of fission yeast Sap1 分子名称: Switch-activating protein 1 著者 Ekundayo, B, Joergensen, M, Schalch, T. 登録日 2017-11-09 公開日 2018-11-28 実験手法 X-RAY DIFFRACTION (1.409 Å) 主引用文献 Structure of the replication regulator Sap1 reveals functionally important interfaces. Sci Rep, 8, 2018
7N9H	Structure of the mammalian importin a1 bound to the TDP-43 NLS 分子名称: Importin subunit alpha-1, TAR DNA-binding protein 43 著者 Doll, S.G, Lokareddy, R.K, Cingolani, G. 登録日 2021-06-17 公開日 2022-06-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Recognition of the TDP-43 nuclear localization signal by importin alpha 1/ beta. Cell Rep, 39, 2022
482D	RELEASE OF THE CYANO MOIETY IN THE CRYSTAL STRUCTURE OF N-CYANOMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN COMPLEXED WITH D(CGATCG) 分子名称: 5'-D(*CP*GP*AP*TP*CP*G)-3', N-HYDROXYMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN 著者 Saminadin, P, Dautant, A, Mondon, M, Langlois D'Estaintot, B, Courseille, C, Precigoux, G. 登録日 1999-07-27 公開日 1999-09-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Release of the cyano moiety in the crystal structure of N-cyanomethyl-N-(2-methoxyethyl)-daunomycin complexed with d(CGATCG). Eur.J.Biochem., 267, 2000
3HQG	Crystal structure of restriction endonuclease EcoRII catalytic C-terminal domain in complex with cognate DNA 分子名称: 5'-D(*TP*AP*GP*CP*CP*TP*GP*GP*TP*CP*GP*A)-3', 5'-D(*TP*CP*GP*AP*CP*CP*AP*GP*GP*CP*TP*A)-3', GLYCEROL, ... 著者 Golovenko, D, Manakova, E, Grazulis, S, Tamulaitiene, G, Siksnys, V. 登録日 2009-06-06 公開日 2009-09-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII. Nucleic Acids Res., 37, 2009
3QMH	Structural Basis of Selective Binding of Non-Methylated CpG islands (DNA-TCGA) by the CXXC Domain of CFP1 分子名称: 5'-D(*GP*CP*CP*AP*TP*CP*GP*AP*TP*GP*GP*C)-3', CpG-binding protein, ZINC ION 著者 Xu, C, Bian, C, MacKenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2011-02-04 公開日 2011-02-23 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain. Nat Commun, 2, 2011
2AQY	(3+1) assembly of three human telomeric DNA repeats into an asymmetrical dimeric G-quadruplex 分子名称: 5'-D(*GP*(OIP)P*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3', 5'-D(*TP*AP*GP*GP*GP*(DU))-3' 著者 Zhang, N, Phan, A.T, Patel, D.J. 登録日 2005-08-18 公開日 2006-03-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 (3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex J.Am.Chem.Soc., 127, 2005
4DM0	TN5 transposase: 20MER OUTSIDE END 2 MN complex 分子名称: 1,2-ETHANEDIOL, DNA NON-TRANSFERRED STRAND, DNA TRANSFERRED STRAND, ... 著者 Klenchin, V.A, Lovell, S, Goryshin, I.Y, Reznikoff, W.R, Rayment, I. 登録日 2012-02-06 公開日 2012-02-22 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Two-metal active site binding of a TN5 transposase synaptic complex Nat.Struct.Biol., 9, 2002
8UMF	Structure of PsCas9 in complex with gRNA and DNA in product state 分子名称: Cas9, DNA (80-MER), MAGNESIUM ION, ... 著者 Bravo, J.P.K, Taylor, D.W. 登録日 2023-10-17 公開日 2024-10-02 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure-guided engineering of PsCas9 yields a high fidelity and activity enzyme for in vivo gene editing To Be Published
6W11	The structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4) 分子名称: CRISPR locus-related putative DNA-binding protein Csa3, cA4 著者 Charbonneau, A.A, Gauvin, C.C, Lawrence, C.M. 登録日 2020-03-03 公開日 2021-03-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Cyclic Tetra-Adenylate (cA 4 ) Recognition by Csa3; Implications for an Integrated Class 1 CRISPR-Cas Immune Response in Saccharolobus solfataricus. Biomolecules, 11, 2021
2O3M	Monomeric G-DNA tetraplex from human C-kit promoter 分子名称: 5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*TP*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3' 著者 Phan, A.T, Kuryavyi, V.V, Burge, S, Neidle, S, Patel, D.J. 登録日 2006-12-01 公開日 2007-05-22 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter. J.Am.Chem.Soc., 129, 2007
8FDR	Structure of a dodecamer complex: 5'-CGCGAAAAGCCG-3-DB1476 分子名称: 4,4'-(1H-benzimidazole-2,6-diyl)di(benzene-1-carboximidamide), DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*G)-3'), ... 著者 Ogbonna, E, Wilson, W.D. 登録日 2022-12-04 公開日 2023-02-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences. Acs Bio Med Chem Au, 3, 2023
4N0O	Complex structure of Arterivirus nonstructural protein 10 (helicase) with DNA 分子名称: CALCIUM ION, DNA, Replicase polyprotein 1ab, ... 著者 Deng, Z, Chen, Z. 登録日 2013-10-02 公開日 2014-01-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase. Nucleic Acids Res., 42, 2014
1Y84	Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T*) 分子名称: 5'-D(*GP*CP*GP*TP*AP*(EIT)P*AP*CP*GP*C)-3', MAGNESIUM ION, SPERMINE 著者 Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M. 登録日 2004-12-10 公開日 2005-06-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry, 44, 2005
1Y86	Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T*) 分子名称: 5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3' 著者 Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M. 登録日 2004-12-10 公開日 2005-06-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry, 44, 2005
1LAI	Solution Structure of the B-DNA Duplex CGCGGTGTCCGCG. 分子名称: 5'-D(*CP*GP*CP*GP*GP*AP*CP*AP*CP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*GP*TP*GP*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2. Chem.Res.Toxicol., 15, 2002
1LAQ	Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C2' Endo Conformation. 分子名称: 5'-D(*CP*GP*CP*GP*GP*AP*(DNR)P*AP*CP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-29 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2. Chem.Res.Toxicol., 15, 2002
1Y7F	Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T*) 分子名称: 5'-D(*GP*CP*GP*TP*AP*(2NT)P*AP*CP*GP*C)-3'), BARIUM ION 著者 Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M. 登録日 2004-12-08 公開日 2005-06-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry, 44, 2005
1LAS	Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C3' Endo Conformation. 分子名称: 5'-D(*CP*GP*CP*GP*GP*AP*(DNR)P*AP*CP*CP*GP*CP*G)-3', 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-29 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2. Chem.Res.Toxicol., 15, 2002
3QMD	Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1 分子名称: CpG-binding protein, DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*AP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*TP*CP*GP*TP*TP*GP*GP*C)-3'), ... 著者 Lam, R, Xu, C, Bian, C.B, Kania, J, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC) 登録日 2011-02-04 公開日 2011-02-23 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The structural basis for selective binding of non-methylated CpG islands by the CFP1 CXXC domain. Nat Commun, 2, 2011
2HKB	NMR Structure of the B-DNA Dodecamer CTCGGCGCCATC 分子名称: 5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3', 5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3' 著者 Wang, F, DeMuro, N.E, Elmquist, C.E, Stover, J.S, Rizzo, C.J, Stone, M.P. 登録日 2006-07-03 公開日 2006-10-03 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2 bp deletions. J.Am.Chem.Soc., 128, 2006

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