PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4C63	ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5- METHYLCYSTOSINE MODIFICATION 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*5CMP*GP*CP*GP)-3', MAGNESIUM ION 著者 Mcdonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J. 登録日 2013-09-17 公開日 2013-10-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Structural insights into how 5-hydroxymethylation influences transcription factor binding. Chem. Commun. (Camb.), 50, 2014
6RIX	Crystal structure of MchDnaB-1 intein 分子名称: CHLORIDE ION, Replicative DNA helicase 著者 Beyer, H.M, Lountos, G.T, Mikula, M.K, Wlodawer, A, Iwai, H. 登録日 2019-04-25 公開日 2020-05-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.655 Å) 主引用文献 The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms. Int J Mol Sci, 21, 2020
3VA0	Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site 分子名称: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
2MZQ	NMR structure of the RRM3 domain of Gbp2 分子名称: Single-strand telomeric DNA-binding protein GBP2 著者 Martinez-Lumbreras, S, Seraphin, B, Perez-Canadillas, J. 登録日 2015-02-23 公開日 2015-12-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Gbp2 interacts with THO/TREX through a novel type of RRM domain. Nucleic Acids Res., 44, 2016
2VPV	Dimerization Domain of Mif2p 分子名称: PROTEIN MIF2, SULFATE ION 著者 Cohen, R.L, Espelin, C.W, Sorger, P.K, Harrison, S.C, Simons, K.T. 登録日 2008-03-05 公開日 2008-08-26 最終更新日 2019-05-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural and Functional Dissection of Mif2P, a Conserved DNA-Binding Kinetochore Protein. Mol.Biol.Cell, 19, 2008
8PJ9	Cas9 bound to cognate DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system 分子名称: CRISPR-associated endonuclease Cas9, DNA oligoduplex, non-target strand, ... 著者 Sasnauskas, G, Gaizauskaite, U, Tamulaitiene, G. 登録日 2023-06-23 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.24 Å) 主引用文献 Structural basis for spacer acquisition in a type II-A CRISPR-Cas system To Be Published
8D2K	Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 2) 分子名称: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*GP*A)-3'), ... 著者 Rai, J, Das, A, Li, H. 登録日 2022-05-30 公開日 2023-12-20 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.43 Å) 主引用文献 Coupled catalytic states and the role of metal coordination in Cas9. Nat Catal, 6, 2023
8D2L	Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1) 分子名称: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*GP*A)-3'), ... 著者 Rai, J, Das, A, Li, H. 登録日 2022-05-30 公開日 2023-12-20 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.21 Å) 主引用文献 Coupled catalytic states and the role of metal coordination in Cas9. Nat Catal, 6, 2023
4Z0C	Crystal structure of TLR13-ssRNA13 complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-R(P*AP*CP*GP*GP*AP*AP*AP*GP*AP*CP*CP*CP*C)-3'), ... 著者 Song, W, Han, Z, Chai, J. 登録日 2015-03-26 公開日 2015-10-07 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for specific recognition of single-stranded RNA by Toll-like receptor 13 Nat.Struct.Mol.Biol., 22, 2015
6RIY	Crystal structure of MchDnaB-1 intein (N145AA) 分子名称: CHLORIDE ION, Replicative DNA helicase 著者 Beyer, H.M, Lountos, G.T, Mikula, M.K, Wlodawer, A, Iwai, H. 登録日 2019-04-25 公開日 2020-05-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms. Int J Mol Sci, 21, 2020
8EC1	5'-CGCGAATTCGCG-3' and benzimidazole diamidine (DB1476) comlpex with ligand orientation I 分子名称: 4,4'-(1H-benzimidazole-2,6-diyl)di(benzene-1-carboximidamide), DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Ogbonna, E.N, Wilson, W.D. 登録日 2022-08-31 公開日 2023-02-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 X-ray Structure Characterization of the Selective Recognition of AT Base Pair Sequences. Acs Bio Med Chem Au, 3, 2023
2CN5	Crystal structure of human Chk2 in complex with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... 著者 Oliver, A.W, Pearl, L.H. 登録日 2006-05-18 公開日 2006-06-28 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Trans-Activation of the DNA-Damage Signalling Protein Kinase Chk2 by T-Loop Exchange Embo J., 25, 2006
1JHI	Solution Structure of a Hedamycin-DNA complex 分子名称: 5'-D(*AP*CP*CP*(HEH)GP*GP*T)-3', HEDAMYCIN 著者 Owen, E.A, Burley, G.A, Carver, J.A, Wickham, G, Keniry, M.A. 登録日 2001-06-27 公開日 2003-07-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural investigation of the hedamycin:d(ACCGGT)2 complex by NMR and restrained molecular dynamics. Biochem.Biophys.Res.Commun., 290, 2002
1MOW	E-DreI 分子名称: 5'-D(*CP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*AP*GP*TP*TP*CP*CP*GP*GP*CP*G)-3', 5'-D(*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*TP*GP*G)-3', GLYCEROL, ... 著者 Chevalier, B.S, Kortemme, T, Chadsey, M.S, Baker, D, Monnat Jr, R.J, Stoddard, B.L. 登録日 2002-09-10 公開日 2002-11-29 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Design, Activity and Structure of a Highly Specific Artificial Endonuclease Mol.Cell, 10, 2002
8CFA	HK97 Prohead II as part of a DNA packaging complex 分子名称: Major capsid subunit 著者 Hawkins, D.E.D.P, Antson, A.A. 登録日 2023-02-03 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.06 Å) 主引用文献 Insights into a viral motor: the structure of the HK97 packaging termination assembly. Nucleic Acids Res., 51, 2023
4D6O	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MG (STATE 2) 分子名称: 25MER, ACETATE ION, HOMING ENDONUCLEASE I-DMOI, ... 著者 Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. 登録日 2014-11-13 公開日 2014-12-17 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
4HQX	CRYSTAL STRUCTURE OF HUMAN PDGF-BB IN COMPLEX WITH A Modified nucleotide aptamer (SOMAmer SL4) 分子名称: MAGNESIUM ION, Platelet-derived growth factor subunit B, SODIUM ION, ... 著者 Davies, D.R, Edwards, T.E, Janjic, N, Gelinas, A.D, Zhang, C, Jarvis, T.C. 登録日 2012-10-26 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets. Proc.Natl.Acad.Sci.USA, 109, 2012
4HQU	Crystal structure of human PDGF-BB in complex with a modified nucleotide aptamer (SOMAmer SL5) 分子名称: MAGNESIUM ION, Platelet-derived growth factor subunit B, SODIUM ION, ... 著者 Davies, D.R, Edwards, T.E, Janjic, N, Gelinas, A.D, Zhang, C, Jarvis, T.C. 登録日 2012-10-26 公開日 2012-11-21 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets. Proc.Natl.Acad.Sci.USA, 109, 2012
1T0F	Crystal Structure of the TnsA/TnsC(504-555) complex 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, MALONIC ACID, ... 著者 Ronning, D.R, Li, Y, Perez, Z.N, Ross, P.D, Hickman, A.B, Craig, N.L, Dyda, F. 登録日 2004-04-08 公開日 2004-11-09 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 The carboxy-terminal portion of TnsC activates the Tn7 transposase through a specific interaction with TnsA. Embo J., 23, 2004
4C64	ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3', MAGNESIUM ION 著者 Mcdonough, M, El-Sagheer, A.H, Brown, T, Schofield, C.J. 登録日 2013-09-17 公開日 2013-10-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Structural insights into how 5-hydroxymethylation influences transcription factor binding. Chem. Commun. (Camb.), 50, 2014
5AK9	THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MN 分子名称: 25MER, 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3, ... 著者 Molina, R, Marcaida, M.J, Redondo, P, Marenchino, M, D'Abramo, M, Montoya, G, Prieto, J. 登録日 2015-03-02 公開日 2015-06-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.601 Å) 主引用文献 Engineering a Nickase on the Homing Endonuclease I-Dmoi Scaffold. J.Biol.Chem., 290, 2015
5AKM	THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MG 分子名称: 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', ... 著者 Molina, R, Marcaida, M.J, Redondo, P, Marenchino, M, D'Abramo, M, Montoya, G, Prieto, J. 登録日 2015-03-04 公開日 2015-06-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Engineering a Nickase on the Homing Endonuclease I-Dmoi Scaffold. J.Biol.Chem., 290, 2015
7V99	catalytic core of human telomerase holoenzyme 分子名称: Histone H2A type 1-B/E, Histone H2B type 1-K, Primer DNA, ... 著者 Wan, F, Ding, Y, Yang, L, Wu, Z, Wu, J, Lei, M. 登録日 2021-08-24 公開日 2022-03-30 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 Zipper head mechanism of telomere synthesis by human telomerase. Cell Res., 31, 2021
8D2O	Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 2) 分子名称: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'), ... 著者 Rai, J, Das, A, Li, H. 登録日 2022-05-30 公開日 2023-12-20 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.66 Å) 主引用文献 Coupled catalytic states and the role of metal coordination in Cas9. Nat Catal, 6, 2023
8D2Q	Structure of Acidothermus cellulolyticus Cas9 ternary complex (Post-cleavage 1) 分子名称: CRISPR-associated endonuclease, Csn1 family, DNA non-target strand (5'-D(P*AP*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3'), ... 著者 Rai, J, Das, A, Li, H. 登録日 2022-05-30 公開日 2023-12-20 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Coupled catalytic states and the role of metal coordination in Cas9. Nat Catal, 6, 2023

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