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1B99
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BU of 1b99 by Molmil
3'-FLUORO-URIDINE DIPHOSPHATE BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE
分子名称: 2',3'-DIDEOXY-3'-FLUORO-URIDIDINE-5'-DIPHOSPHATE, PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE), PYROPHOSPHATE 2-
著者Janin, J, Xu, Y.
登録日1999-02-22
公開日1999-06-28
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Catalytic mechanism of nucleoside diphosphate kinase investigated using nucleotide analogues, viscosity effects, and X-ray crystallography.
Biochemistry, 38, 1999
7ZL8
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NME1 in complex with succinyl-CoA
分子名称: Nucleoside diphosphate kinase A, SUCCINYL-COENZYME A
著者Garcia-Saez, I, Iuso, D, Khochbin, S, Petosa, C.
登録日2022-04-14
公開日2023-08-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Nucleoside diphosphate kinases 1 and 2 regulate a protective liver response to a high-fat diet.
Sci Adv, 9, 2023
1BHN
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BU of 1bhn by Molmil
NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM A FROM BOVINE RETINA
分子名称: GUANOSINE-3',5'-MONOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, NUCLEOSIDE DIPHOSPHATE TRANSFERASE
著者Ladner, J.E, Abdulaev, N.G, Kakuev, D.L, Karaschuk, G.N, Tordova, M, Eisenstein, E, Fujiwara, J.H, Ridge, K.D, Gilliland, G.L.
登録日1998-06-10
公開日1999-02-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The three-dimensional structures of two isoforms of nucleoside diphosphate kinase from bovine retina.
Acta Crystallogr.,Sect.D, 55, 1999
4OQP
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BU of 4oqp by Molmil
Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis in complex with deoxyribose-5-phosphate
分子名称: CADMIUM ION, COBALT (II) ION, Deoxyribonucleoside regulator, ...
著者Rezacova, P, Skerlova, J.
登録日2014-02-10
公開日2014-06-04
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis.
Febs J., 281, 2014
4OQQ
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Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis
分子名称: BICINE, Deoxyribonucleoside regulator
著者Rezacova, P, Skerlova, J.
登録日2014-02-10
公開日2014-06-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the effector-binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis.
Febs J., 281, 2014
3Q86
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BU of 3q86 by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP
分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-06
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
1VHB
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BU of 1vhb by Molmil
BACTERIAL DIMERIC HEMOGLOBIN FROM VITREOSCILLA STERCORARIA
分子名称: HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
著者Tarricone, C, Galizzi, A, Coda, A, Ascenzi, P, Bolognesi, M.
登録日1997-02-19
公開日1998-02-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Unusual structure of the oxygen-binding site in the dimeric bacterial hemoglobin from Vitreoscilla sp.
Structure, 5, 1997
3Q8Y
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase, ...
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-07
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3Q8V
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with UDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-07
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
1EHW
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BU of 1ehw by Molmil
HUMAN NUCLEOSIDE DIPHOSPHATE KINASE 4
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION
著者Milon, L, Meyer, P, Chiadmi, M, Munier, A, Johansson, M, Karlsson, A, Lascu, I, Capeau, J, Janin, J, Lacombe, M.-L.
登録日2000-02-23
公開日2000-05-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The human nm23-H4 gene product is a mitochondrial nucleoside diphosphate kinase.
J.Biol.Chem., 275, 2000
3Q89
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with CDP
分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-06
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3Q8U
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BU of 3q8u by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Srivastava, S.K, Rajasree, K, Gopal, B.
登録日2011-01-07
公開日2011-07-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
7ABI
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BU of 7abi by Molmil
Human pre-Bact-2 spliceosome
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Beta-catenin-like protein 1, ...
著者Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R.
登録日2020-09-07
公開日2021-02-10
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (8 Å)
主引用文献Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science, 370, 2020
7ABG
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BU of 7abg by Molmil
Human pre-Bact-1 spliceosome
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, Cell division cycle 5-like protein, ...
著者Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R.
登録日2020-09-07
公開日2020-12-23
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (7.8 Å)
主引用文献Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science, 370, 2020
3NGS
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BU of 3ngs by Molmil
Structure of Leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Nucleoside diphosphate kinase, PHOSPHATE ION
著者Trindade, D.M, Sousa, T.A.C.B, Tonoli, C.C.C, Santos, C.R, Arni, R.K, Ward, R.J, Oliveira, A.H.C, Murakami, M.T.
登録日2010-06-13
公開日2011-04-27
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding.
Mol Biosyst, 7, 2011
7AAV
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BU of 7aav by Molmil
Human pre-Bact-2 spliceosome core structure
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Cell division cycle 5-like protein, D-chiro inositol hexakisphosphate, ...
著者Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R.
登録日2020-09-04
公開日2020-12-09
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science, 370, 2020
7ABF
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BU of 7abf by Molmil
Human pre-Bact-1 spliceosome core structure
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
著者Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R.
登録日2020-09-07
公開日2020-12-09
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science, 370, 2020
1H1H
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BU of 1h1h by Molmil
Crystal Structure of Eosinophil Cationic Protein in Complex with 2',5'-ADP at 2.0 A resolution Reveals the Details of the Ribonucleolytic Active site
分子名称: ADENOSINE-2'-5'-DIPHOSPHATE, EOSINOPHIL CATIONIC PROTEIN
著者Mohan, C.G, Boix, E, Evans, H.R, Nikolovski, Z, Nogues, M.V, Cuchillo, C.M, Acharya, K.R.
登録日2002-07-15
公開日2002-10-03
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Crystal Structure of Eosinophil Cationic Protein in Complex with 2'5'-Adp at 2.0 A Resolution Reveals the Details of the Ribonucleolytic Active Site
Biochemistry, 41, 2002
3VHB
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IMIDAZOLE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA SP.
分子名称: IMIDAZOLE, PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE
著者Bolognesi, M, Boffi, A, Coletta, M, Mozzarelli, A, Pesce, A, Tarricone, C, Ascenzi, P.
登録日1999-03-17
公開日1999-08-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Anticooperative ligand binding properties of recombinant ferric Vitreoscilla homodimeric hemoglobin: a thermodynamic, kinetic and X-ray crystallographic study.
J.Mol.Biol., 291, 1999
1H8U
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BU of 1h8u by Molmil
Crystal Structure of the Eosinophil Major Basic Protein at 1.8A: An Atypical Lectin with a Paradigm Shift in Specificity
分子名称: EOSINOPHIL GRANULE MAJOR BASIC PROTEIN 1, GLYCEROL, SULFATE ION
著者Swaminathan, G.J, Weaver, A.J, Loegering, D.A, Checkel, J.L, Leonidas, D.D, Gleich, G.J, Acharya, K.R.
登録日2001-02-15
公開日2001-07-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Eosinophil Major Basic Protein at 1.8A. An Atypical Lectin with a Paradigm Shift in Specificity
J.Biol.Chem., 276, 2001
1QGV
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HUMAN SPLICEOSOMAL PROTEIN U5-15KD
分子名称: SPLICEOSOMAL PROTEIN U5-15KD
著者Reuter, K, Nottrott, S, Fabrizio, P, Luehrmann, R, Ficner, R.
登録日1999-05-06
公開日1999-12-12
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Identification, characterization and crystal structure analysis of the human spliceosomal U5 snRNP-specific 15 kD protein.
J.Mol.Biol., 294, 1999
3TM9
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BU of 3tm9 by Molmil
Y29A mutant of Vitreoscilla stercoraria hemoglobin
分子名称: 1,2-ETHANEDIOL, Bacterial hemoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Ratakonda, S, Anand, A, Dikshit, K, Stark, B.C, Howard, A.J.
登録日2011-08-31
公開日2014-04-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site.
Acta Crystallogr.,Sect.F, 69, 2013
3TM3
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Wild-type hemoglobin from Vitreoscilla stercoraria
分子名称: Hemoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Ratakonda, S, Anand, A, Dikshit, K, Stark, B.C, Howard, A.J.
登録日2011-08-31
公開日2014-04-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site.
Acta Crystallogr.,Sect.F, 69, 2013
3TLD
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BU of 3tld by Molmil
Crystal Structure of Y29F mutant of Vitreoscilla hemoglobin
分子名称: Bacterial hemoglobin, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE
著者Ratakonda, S, Anand, A, Dikshit, K, Stark, B.C, Howard, A.J.
登録日2011-08-29
公開日2014-04-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.896 Å)
主引用文献Crystallographic structure determination of B10 mutants of Vitreoscilla hemoglobin: role of Tyr29 (B10) in the structure of the ligand-binding site.
Acta Crystallogr.,Sect.F, 69, 2013
1ZUX
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BU of 1zux by Molmil
EosFP Fluorescent Protein- Green Form
分子名称: green to red photoconvertible GPF-like protein EosFP
著者Nar, H, Nienhaus, K, Wiedenmann, J, Nienhaus, G.U.
登録日2005-06-01
公開日2005-06-28
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP.
Proc.Natl.Acad.Sci.Usa, 102, 2005

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