PDB: 48855 件ウェブページステータス検索Chemie searchBIRD

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4QR9	Crystal structure of two HMGB1 Box A domains cooperating to underwind and kink a DNA 分子名称: DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3'), High mobility group protein B1, MAGNESIUM ION 著者 Sanchez-Giraldo, R, Acosta-Reyes, F.J, Malarkey, C.S, Saperas, N, Churchill, M.E.A, Campos, J.L. 登録日 2014-06-30 公開日 2015-07-01 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Two high-mobility group box domains act together to underwind and kink DNA. Acta Crystallogr.,Sect.D, 71, 2015
1LV5	Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*CP*GP*TP*CP*GP*CP*TP*GP*AP*TP*CP*CP*G)-3', 5'-D(*GP*GP*AP*TP*CP*AP*GP*CP*GP*A)-3', ... 著者 Johnson, S.J, Taylor, J.S, Beese, L.S. 登録日 2002-05-24 公開日 2003-03-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations Proc.Natl.Acad.Sci.USA, 100, 2003
3U58	Crystal Structure of the Tetrahymena telomerase processivity factor Teb1 AB 分子名称: DNA (5'-D(*GP*GP*GP*T)-3'), Tetrahymena Teb1 AB 著者 Zeng, Z, Huang, J, Yang, Y, Lei, M. 登録日 2011-10-11 公開日 2011-12-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.613 Å) 主引用文献 Structural basis for Tetrahymena telomerase processivity factor Teb1 binding to single-stranded telomeric-repeat DNA. Proc.Natl.Acad.Sci.USA, 108, 2011
1YSA	THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX 分子名称: DNA (5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3'), PROTEIN (GCN4) 著者 Ellenberger, T.E, Brandl, C.J, Struhl, K, Harrison, S.C. 登録日 1993-08-09 公開日 1993-10-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. Cell(Cambridge,Mass.), 71, 1992
2I9G	DNA Polymerase Beta with a Benzo[c]phenanthrene diol epoxide adducted guanine base 分子名称: (1S)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL, 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', ... 著者 Batra, V.K, Wilson, S.H, Beard, W.A, Pedersen, L.C. 登録日 2006-09-05 公開日 2006-10-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of DNA polymerase beta with a benzo[c]phenanthrene diol epoxide-adducted template exhibits mutagenic features. Proc.Natl.Acad.Sci.Usa, 103, 2006
2DGC	GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA 分子名称: DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3'), PROTEIN (GCN4) 著者 Keller, W, Koenig, P, Richmond, T.J. 登録日 1995-09-28 公開日 1996-03-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition. J.Mol.Biol., 254, 1995
6R9B	Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Ye, F.Z, Zhang, X.D. 登録日 2019-04-03 公開日 2020-02-26 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7. Elife, 9, 2020
4XRH	Human DNA polymerase lambda- MgdTTP binary and complex with 6 paired DNA 分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-01-21 公開日 2016-02-24 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
2JGU	crystal structure of DNA-directed DNA polymerase 分子名称: DNA POLYMERASE, MANGANESE (II) ION 著者 Kim, D.U, Cho, H.S. 登録日 2007-02-15 公開日 2008-04-22 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structure of Pfu, the High Fidelity DNA Polymerase from Pyrococcus Furiosus. Int.J.Biol.Macromol., 42, 2008
7DCJ	Crystal structure of HSF1 DNA-binding domain in complex with 2-site HSE DNA in the head-to-head orientation 分子名称: DNA (5'-D(*GP*CP*CP*GP*AP*AP*TP*AP*TP*TP*CP*GP*G)-3'), Heat shock factor protein 1, SODIUM ION 著者 Feng, N, Liu, W. 登録日 2020-10-26 公開日 2021-07-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Structures of heat shock factor trimers bound to DNA. Iscience, 24, 2021
7DCT	Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (24 bp) 分子名称: DNA (5'-D(*AP*CP*TP*CP*GP*CP*GP*AP*AP*TP*AP*TP*TP*CP*TP*AP*GP*AP*AP*CP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*GP*TP*TP*CP*TP*AP*GP*AP*AP*TP*AP*TP*TP*CP*GP*CP*GP*AP*G)-3'), Heat shock factor protein 1, ... 著者 Feng, N, Liu, W. 登録日 2020-10-27 公開日 2021-07-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structures of heat shock factor trimers bound to DNA. Iscience, 24, 2021
7DCU	Crystal structure of HSF2 DNA-binding domain in complex with 3-site HSE DNA (21 bp) 分子名称: DNA (5'-D(*AP*CP*CP*GP*CP*GP*AP*AP*TP*AP*TP*TP*CP*TP*AP*GP*AP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*TP*CP*TP*AP*GP*AP*AP*TP*AP*TP*TP*CP*GP*CP*GP*G)-3'), Heat shock factor protein 2, ... 著者 Feng, N, Liu, W. 登録日 2020-10-27 公開日 2021-07-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structures of heat shock factor trimers bound to DNA. Iscience, 24, 2021
7DCS	Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (23 bp) 分子名称: DNA (5'-D(*AP*TP*CP*CP*GP*CP*GP*AP*AP*TP*AP*TP*TP*CP*TP*AP*GP*AP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*CP*GP*TP*TP*CP*TP*AP*GP*AP*AP*TP*AP*TP*TP*CP*GP*CP*GP*GP*A)-3'), Heat shock factor protein 1, ... 著者 Feng, N, Liu, W. 登録日 2020-10-27 公開日 2021-07-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of heat shock factor trimers bound to DNA. Iscience, 24, 2021
8Q3R	Cryo-EM structure of the DNA polymerase holoenzyme E9-A20-D4 of vaccinia virus 分子名称: DNA polymerase, DNA polymerase processivity factor component OPG148, Uracil-DNA glycosylase 著者 Burmeister, W.P, Ballandras-Colas, A, Boettcher, B, Grimm, C. 登録日 2023-08-04 公開日 2024-05-08 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structure and flexibility of the DNA polymerase holoenzyme of vaccinia virus. Plos Pathog., 20, 2024
3MKY	Structure of SopB(155-323)-18mer DNA complex, I23 form 分子名称: DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3'), Protein sopB, SULFATE ION 著者 Schumacher, M.A, Piro, K, Xu, W. 登録日 2010-04-15 公開日 2010-05-05 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Insight into F plasmid DNA segregation revealed by structures of SopB and SopB-DNA complexes. Nucleic Acids Res., 38, 2010
6R9G	Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Ye, F.Z, Zhang, X.D. 登録日 2019-04-03 公開日 2020-02-26 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7. Elife, 9, 2020
1L3T	Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue 分子名称: 5'-D(*GP*AP*CP*G*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3', DNA Polymerase I, ... 著者 Johnson, S.J, Taylor, J.S, Beese, L.S. 登録日 2002-03-01 公開日 2003-03-25 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations Proc.Natl.Acad.Sci.USA, 100, 2003
8EFC	Structure of Lates calcarifer DNA polymerase theta polymerase domain with long duplex DNA, complex Ia 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*CP*TP*GP*TP*GP*AP*GP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3'), DNA (5'-D(*AP*GP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*CP*CP*TP*CP*AP*CP*AP*G)-3'), ... 著者 Li, C, Zhu, H, Sun, J, Gao, Y. 登録日 2022-09-08 公開日 2022-12-14 最終更新日 2025-05-21 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of DNA polymerase theta mediated DNA end joining. Nucleic Acids Res., 51, 2023
1SKN	THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIF 分子名称: DNA (5'-D(*CP*AP*GP*GP*GP*AP*TP*GP*AP*CP*AP*TP*TP*GP*T)-3'), DNA (5'-D(*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*TP*CP*CP*C)-3'), DNA-BINDING DOMAIN OF SKN-1, ... 著者 Rupert, P.B, Daughdrill, G.W, Bowerman, B, Matthews, B.W. 登録日 1998-03-30 公開日 1998-06-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A new DNA-binding motif in the Skn-1 binding domain-DNA complex. Nat.Struct.Biol., 5, 1998
2JXI	Solution structure of the DNA-binding domain of Pseudomonas putida Proline utilization A (putA) bound to GTTGCA DNA sequence 分子名称: DNA (5'-D(*DAP*DAP*DAP*DGP*DGP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DCP*DTP*DTP*DT)-3'), Proline dehydrogenase 著者 Halouska, S, Zhou, Y, Becker, D, Powers, R. 登録日 2007-11-19 公開日 2008-10-21 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex Proteins, 75, 2008
6T8H	Cryo-EM structure of the DNA-bound PolD-PCNA processive complex from P. abyssi 分子名称: DNA polymerase II small subunit, DNA polymerase sliding clamp, DNA primer, ... 著者 Madru, C, Raia, P, Hugonneau Beaufet, I, Pehau-Arnaudet, G, England, P, Lindhal, E, Delarue, M, Carroni, M, Sauguet, L. 登録日 2019-10-24 公開日 2020-03-04 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (3.77 Å) 主引用文献 Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA. Nat Commun, 11, 2020
2ATQ	RB69 single-stranded DNA binding protein-DNA polymerase fusion 分子名称: DNA polymerase, GUANOSINE-5'-DIPHOSPHATE, ZINC ION, ... 著者 Sun, S, Geng, L, Shamoo, Y. 登録日 2005-08-25 公開日 2006-05-09 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity. Proteins, 65, 2006
6XTX	CryoEM structure of human CMG bound to ATPgammaS and DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45 homolog, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ... 著者 Rzechorzek, N.J, Pellegrini, L. 登録日 2020-01-16 公開日 2020-05-27 最終更新日 2025-07-09 実験手法 ELECTRON MICROSCOPY (3.29 Å) 主引用文献 CryoEM structures of human CMG-ATP gamma S-DNA and CMG-AND-1 complexes. Nucleic Acids Res., 48, 2020
5FKU	cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex) 分子名称: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.34 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
7E92	Crystal structure of the DNA-binding domain of the response regulator VbrR from Vibrio parahaemolyticus 分子名称: DNA-binding response regulator 著者 Cho, S.Y, Yoon, S.I. 登録日 2021-03-03 公開日 2021-04-28 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural analysis of the activation and DNA interactions of the response regulator VbrR from Vibrio parahaemolyticus. Biochem.Biophys.Res.Commun., 555, 2021

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