Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8TOO
DownloadVisualize
BU of 8too by Molmil
Crystal structure of Epstein-Barr virus gp42 in complex with antibody 4C12
分子名称: 4C12 heavy chain, 4C12 light chain, Glycoprotein 42
著者Bu, W, Kumar, A, Board, N, Kim, J, Dowdell, K, Zhang, S, Lei, Y, Hostal, A, Krogmann, T, Wang, Y, Pittaluga, S, Marcotrigiano, J, Cohen, J.I.
登録日2023-08-03
公開日2024-03-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells.
Immunity, 57, 2024
7JU7
DownloadVisualize
BU of 7ju7 by Molmil
The crystal structure of SARS-CoV-2 Main Protease in complex with masitinib
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Tan, K, Maltseva, N.I, Welk, L.F, Jedrzejczak, R.P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-08-19
公開日2020-09-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Masitinib is a broad coronavirus 3CL inhibitor that blocks replication of SARS-CoV-2.
Science, 373, 2021
1BJM
DownloadVisualize
BU of 1bjm by Molmil
LOC NAKS, A LAMBDA 1 TYPE LIGHT-CHAIN DIMER (BENCE-JONES PROTEIN) CRYSTALLIZED IN NAKSO4
分子名称: LOC - LAMBDA 1 TYPE LIGHT-CHAIN DIMER
著者Schiffer, M, Huang, D.B.
登録日1995-05-26
公開日1995-12-07
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three quaternary structures for a single protein.
Proc.Natl.Acad.Sci.USA, 93, 1996
4XHX
DownloadVisualize
BU of 4xhx by Molmil
Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with Optactin and 2-[(3-Chlorobenzyl)ammonio]ethanesulfonate
分子名称: (1s,3R,4S)-1-[(cyclohexylamino)methyl]-3,4-dihydroxycyclopentanesulfonic acid, 2-[(3-chlorobenzyl)amino]ethanesulfonic acid, DIMETHYL SULFOXIDE, ...
著者Brear, P.
登録日2015-01-06
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB
To be published
4XCZ
DownloadVisualize
BU of 4xcz by Molmil
X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens in complex with TDP-Qui3n and N5-THF
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid, ...
著者Thoden, J.B, Woodford, C.R, Holden, H.M.
登録日2014-12-18
公開日2015-01-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献New Role for the Ankyrin Repeat Revealed by a Study of the N-Formyltransferase from Providencia alcalifaciens.
Biochemistry, 54, 2015
4XIK
DownloadVisualize
BU of 4xik by Molmil
Crystal structure of NanB sialidase from streptococcus pneumoniae in complex with DMSO
分子名称: DIMETHYL SULFOXIDE, Sialidase B
著者Brear, P.
登録日2015-01-07
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献`The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB
To be published
4XIV
DownloadVisualize
BU of 4xiv by Molmil
Kinase and Dimerization (P3P4) of the Thermotoga maritima CheA kinase
分子名称: ADENOSINE-5'-DIPHOSPHATE, Chemotaxis protein CheA, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Greenswag, A.R, Crane, B.R.
登録日2015-01-07
公開日2015-11-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Conformational Transitions that Enable Histidine Kinase Autophosphorylation and Receptor Array Integration.
J.Mol.Biol., 427, 2015
5LJN
DownloadVisualize
BU of 5ljn by Molmil
Structure of the HOIP PUB domain bound to SPATA2 PIM peptide
分子名称: E3 ubiquitin-protein ligase RNF31, GLYCEROL, SULFATE ION, ...
著者Elliott, P.R, Komander, D.
登録日2016-07-18
公開日2016-08-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling.
Mol.Cell, 63, 2016
8ERW
DownloadVisualize
BU of 8erw by Molmil
Precisely patterned nanofibers made from extendable protein multiplexes
分子名称: C2HR4_8r
著者Bick, M.J, Parmeggiani, F, Bethel, N.P, Sankaran, B, Baker, D.
登録日2022-10-12
公開日2023-08-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Precisely patterned nanofibres made from extendable protein multiplexes.
Nat.Chem., 15, 2023
6VM5
DownloadVisualize
BU of 6vm5 by Molmil
Structure of Moraxella osloensis Cap4 SAVED/CARF-domain containing receptor
分子名称: MAGNESIUM ION, SAVED domain-containing protein
著者Lowey, B, Whiteley, A.T, Keszei, A.F.A, Morehouse, B.R, Antine, S.P, Cabrera, V, Schwede, F, Mekalanos, J.J, Shao, S, Lee, A.S.Y, Kranzusch, P.J.
登録日2020-01-27
公開日2020-06-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
Cell, 182, 2020
6VMA
DownloadVisualize
BU of 6vma by Molmil
T4H2 T cell receptor bound to HLA-A2 presenting gp100 peptide (ITDQVPFSV)
分子名称: Beta-2-microglobulin, MHC class I antigen, A-2 alpha chain, ...
著者Smith, A.R, Baker, B.M.
登録日2020-01-27
公開日2021-01-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structurally silent peptide anchor modifications allosterically modulate T cell recognition in a receptor-dependent manner
Proc.Natl.Acad.Sci.USA, 118, 2021
6FXL
DownloadVisualize
BU of 6fxl by Molmil
Structure of Trypanosoma cruzi type B ribose 5-phosphate isomerase (TcRpiB)
分子名称: PHOSPHATE ION, Ribose 5-phosphate isomerase, putative
著者Ronin, C, Ciesielski, F, Ciapetti, P.
登録日2018-03-09
公開日2019-05-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structure of Trypanosoma cruzi type B ribose 5-phosphate isomerase (TcRpiB)
To Be Published
4XOB
DownloadVisualize
BU of 4xob by Molmil
Crystal structure of a FimH*DsF complex from E.coli K12 with bound heptyl alpha-D-mannopyrannoside
分子名称: FimF, Protein FimH, SULFATE ION, ...
著者Jakob, R.P, Eras, J, Navarra, G, Ernst, B, Glockshuber, R, Maier, T.
登録日2015-01-16
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.003 Å)
主引用文献Catch-bond mechanism of the bacterial adhesin FimH.
Nat Commun, 7, 2016
5LZG
DownloadVisualize
BU of 5lzg by Molmil
Cholera toxin El Tor B-pentamer in complex with inhibitor PC262
分子名称: (2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid, (4R)-2-METHYLPENTANE-2,4-DIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Heggelund, J.E, Martinsen, T, Krengel, U.
登録日2016-09-29
公開日2017-05-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Towards new cholera prophylactics and treatment: Crystal structures of bacterial enterotoxins in complex with GM1 mimics.
Sci Rep, 7, 2017
1C21
DownloadVisualize
BU of 1c21 by Molmil
E. COLI METHIONINE AMINOPEPTIDASE: METHIONINE COMPLEX
分子名称: COBALT (II) ION, METHIONINE, METHIONINE AMINOPEPTIDASE, ...
著者Lowther, W.T, Zhang, Y, Sampson, P.B, Honek, J.F, Matthews, B.W.
登録日1999-07-22
公開日1999-11-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Insights into the mechanism of Escherichia coli methionine aminopeptidase from the structural analysis of reaction products and phosphorus-based transition-state analogues.
Biochemistry, 38, 1999
6N4J
DownloadVisualize
BU of 6n4j by Molmil
Ti(III)citrate-reduced, nucleotide-free form of the nitrogenase Fe-protein from A. vinelandii
分子名称: IRON/SULFUR CLUSTER, Nitrogenase iron protein 1
著者Wenke, B.B, Spatzal, T, Rees, D.C.
登録日2018-11-19
公開日2019-02-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Site-Specific Oxidation State Assignments of the Iron Atoms in the [4Fe:4S]2+/1+/0States of the Nitrogenase Fe-Protein.
Angew. Chem. Int. Ed. Engl., 58, 2019
8TO2
DownloadVisualize
BU of 8to2 by Molmil
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
分子名称: Allophycocyanin alpha chain, Allophycocyanin beta chain, Allophycocyanin subunit alpha-B, ...
著者Sauer, P.V, Sutter, M, Cupellini, L.
登録日2023-08-02
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (2 Å)
主引用文献Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes.
Sci Adv, 10, 2024
4XTY
DownloadVisualize
BU of 4xty by Molmil
Mycobacterium tuberculosis biotin ligase complexed with bisubstrate inhibitor 63 with Fluorine in place of 2'OH
分子名称: 2',5'-dideoxy-2'-fluoro-5'-[({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}sulfamoyl)amino]adenosine, Bifunctional ligase/repressor BirA
著者De la Mora-Rey, T, Finzel, B.C.
登録日2015-01-24
公開日2015-09-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.80002666 Å)
主引用文献Targeting Mycobacterium tuberculosis Biotin Protein Ligase (MtBPL) with Nucleoside-Based Bisubstrate Adenylation Inhibitors.
J.Med.Chem., 58, 2015
8ASC
DownloadVisualize
BU of 8asc by Molmil
Ku70/80 binds to the Ku-binding motif of PAXX
分子名称: DNA (5'-D(P*CP*GP*GP*AP*TP*CP*GP*AP*GP*GP*GP*CP*CP*CP*GP*AP*TP*AP*T)-3'), DNA (5'-D(P*GP*GP*GP*CP*CP*CP*TP*CP*GP*AP*TP*CP*CP*G)-3'), Protein PAXX, ...
著者Seif El Dahan, M, Ropars, V, Charbonnier, J.B.
登録日2022-08-19
公開日2023-06-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献PAXX binding to the NHEJ machinery explains functional redundancy with XLF.
Sci Adv, 9, 2023
6VV8
DownloadVisualize
BU of 6vv8 by Molmil
Mycobacterium tuberculosis dihydrofolate reductase in complex with JEB285
分子名称: 5-{[3-(1H-indol-3-yl)propanoyl]amino}-1-phenyl-1H-pyrazole-4-carboxylic acid, COBALT (II) ION, Dihydrofolate reductase, ...
著者Ribeiro, J.A, Chavez-Pacheco, S.M, Dias, M.V.B.
登録日2020-02-17
公開日2020-07-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.683 Å)
主引用文献Using a Fragment-Based Approach to Identify Alternative Chemical Scaffolds Targeting Dihydrofolate Reductase fromMycobacterium tuberculosis.
Acs Infect Dis., 6, 2020
6TBH
DownloadVisualize
BU of 6tbh by Molmil
Structure of a beta galactosidase with inhibitor
分子名称: 5-[ethyl(methyl)amino]-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide, ACETATE ION, Beta-galactosidase, ...
著者Offen, W, Davies, G.
登録日2019-11-01
公開日2020-08-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Mechanistic Insights into the Chaperoning of Human Lysosomal-Galactosidase Activity: Highly Functionalized Aminocyclopentanes and C -5a-Substituted Derivatives of 4- epi -Isofagomine.
Molecules, 25, 2020
7U51
DownloadVisualize
BU of 7u51 by Molmil
Nucleosome core particle with AP-site at SHL-6
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U50
DownloadVisualize
BU of 7u50 by Molmil
APE1 bound to a nucleosome core particle with AP-site at SHL-6
分子名称: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
著者Weaver, T.M, Freudenthal, B.D.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
7U52
DownloadVisualize
BU of 7u52 by Molmil
nucleosome core particle with AP-site at SHL-6.5
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
4XEE
DownloadVisualize
BU of 4xee by Molmil
Structure of active-like neurotensin receptor
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CITRATE ANION, DI(HYDROXYETHYL)ETHER, ...
著者Krumm, B.E, White, J.F, Shah, P, Grisshammer, R.
登録日2014-12-23
公開日2015-07-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural prerequisites for G-protein activation by the neurotensin receptor.
Nat Commun, 6, 2015

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon