PDB: 2705 件ウェブページステータス検索Chemie searchBIRD

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1V4J	Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima V73Y mutant 分子名称: SULFATE ION, octoprenyl-diphosphate synthase 著者 Guo, R.T, Kuo, C.J, Chou, C.C, Ko, T.P, Shr, H.L, Liang, P.H, Wang, A.H.-J. 登録日 2003-11-14 公開日 2004-03-02 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima and Mechanism of Product Chain Length Determination J.Biol.Chem., 279, 2004
6Y69	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Wieland, M, Wilson, D.N. 登録日 2020-02-26 公開日 2020-07-01 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. Nat.Chem.Biol., 16, 2020
7ASP	Staphylococcus aureus 70S after 50 minutes incubation at 37C 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Cimicata, G, Bashan, A, Yonath, A. 登録日 2020-10-27 公開日 2021-11-17 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Staphylococcus aureus 50S after 30 minutes incubation a 37C To Be Published
7QGG	Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Pulk, A, Kipper, K, Mansour, A. 登録日 2021-12-08 公開日 2022-10-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state. J.Mol.Biol., 434, 2022
8DO0	Cryo-EM structure of the human Sec61 complex inhibited by mycolactone 分子名称: Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma, ... 著者 Park, E, Itskanov, S. 登録日 2022-07-12 公開日 2023-05-24 最終更新日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 A common mechanism of Sec61 translocon inhibition by small molecules. Nat.Chem.Biol., 19, 2023
5DGM	Crystal structure of human FPPS in complex with monophosphonate compound 7 分子名称: Farnesyl pyrophosphate synthase, PHOSPHATE ION, {2-[(phosphonomethyl)carbamoyl]-1H-benzo[g]indol-1-yl}acetic acid 著者 Rondeau, J.M, Bourgier, E, Lehmann, S. 登録日 2015-08-28 公開日 2016-07-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 A General Strategy for Targeting Drugs to Bone. Angew.Chem.Int.Ed.Engl., 54, 2015
8B5L	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Pauwels, E, Shewakramani, N.R, De Wijngaert, B, Vermeire, K, Das, K. 登録日 2022-09-23 公開日 2023-03-01 最終更新日 2023-03-15 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative. Sci Adv, 9, 2023
8FMW	The structure of a hibernating ribosome in the Lyme disease pathogen 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Sharma, M.R, Manjari, S.R, Agrawal, E.K, Keshavan, P, Koripella, R.K, Majumdar, S, Marcinkiewicz, A.L, Lin, Y.P, Agrawal, R.K, Banavali, N.K. 登録日 2022-12-25 公開日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 The structure of a hibernating ribosome in a Lyme disease pathogen. Nat Commun, 14, 2023
6GPB	REFINED CRYSTAL STRUCTURE OF THE PHOSPHORYLASE-HEPTULOSE 2-PHOSPHATE-OLIGOSACCHARIDE-AMP COMPLEX 分子名称: 1-deoxy-2-O-phosphono-alpha-D-gluco-hept-2-ulopyranose, ADENOSINE MONOPHOSPHATE, GLYCOGEN PHOSPHORYLASE B, ... 著者 Acharya, K.R, Johnson, L.N. 登録日 1990-06-04 公開日 1992-10-15 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 Refined crystal structure of the phosphorylase-heptulose 2-phosphate-oligosaccharide-AMP complex. J.Mol.Biol., 211, 1990
8EVR	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II 分子名称: (1S,3S,3aR,4S,4aR,7R,7aR,8aS)-8a-{[(6-deoxy-4-O-methyl-alpha-D-altropyranosyl)oxy]methyl}-4-formyl-7-methyl-3-(propan-2-yl)decahydro-1,4-methano-s-indacene-3a(1H)-carboxylate, 18S rRNA, 25S rRNA, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (2.87 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWB	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-22 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.87 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
6U48	E. coli 50S with phazolicin (PHZ) bound in exit tunnel 分子名称: 23S rRNA, 50S ribosomal protein bL17, 50S ribosomal protein bL19, ... 著者 Watson, Z.L, Cate, J.H.D, Polikanov, Y.S, Severinov, K. 登録日 2019-08-23 公開日 2019-09-18 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.87 Å) 主引用文献 Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition. Nat Commun, 10, 2019
7Z84	Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Open-ready state 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ... 著者 Kravchuk, V, Kampjut, D, Sazanov, L. 登録日 2022-03-16 公開日 2022-09-21 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.87 Å) 主引用文献 A universal coupling mechanism of respiratory complex I. Nature, 609, 2022
1PYG	STRUCTURAL BASIS FOR THE ACTIVATION OF GLYCOGEN PHOSPHORYLASE B BY ADENOSINE MONOPHOSPHATE 分子名称: ADENOSINE MONOPHOSPHATE, GLYCOGEN PHOSPHORYLASE B, PYRIDOXAL-5'-DIPHOSPHATE 著者 Sprang, S. 登録日 1992-07-07 公開日 1994-01-31 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Structural basis for the activation of glycogen phosphorylase b by adenosine monophosphate. Science, 254, 1991
7AZY	Context-specific inhibition of eukaryotic translation by macrolide antibiotics 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Koller, T.O, Wilson, D.N. 登録日 2020-11-17 公開日 2021-05-19 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.877 Å) 主引用文献 Context-specific action of macrolide antibiotics on the eukaryotic ribosome. Nat Commun, 12, 2021
8FKS	Human nucleolar pre-60S ribosomal subunit (State B2) 分子名称: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ... 著者 Vanden Broeck, A, Klinge, S. 登録日 2022-12-21 公開日 2023-07-12 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 Principles of human pre-60 S biogenesis. Science, 381, 2023
8BGH	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation 分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... 著者 Koziej, L, Glatt, S. 登録日 2022-10-27 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
7Z83	Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Open state 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, ... 著者 Kravchuk, V, Kampjut, D, Sazanov, L. 登録日 2022-03-16 公開日 2022-09-21 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 A universal coupling mechanism of respiratory complex I. Nature, 609, 2022
7ARC	Cryo-EM structure of Polytomella Complex-I (peripheral arm) 分子名称: 13 kDa, 18 kDa, 24 kDa, ... 著者 Klusch, N, Kuehlbrandt, W, Yildiz, O. 登録日 2020-10-23 公開日 2021-12-08 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 A ferredoxin bridge connects the two arms of plant mitochondrial complex I. Plant Cell, 33, 2021
8EV7	Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Seely, S.M, Gagnon, M.G. 登録日 2022-10-19 公開日 2023-08-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome. Nat Commun, 14, 2023
8A3W	CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : WILD TYPE 分子名称: 40S ribosomal protein S14, 40S ribosomal protein S19-like protein, 40S ribosomal protein S2, ... 著者 Rajan, K.S, Yonath, A, Bashan, A. 登録日 2022-06-09 公開日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : WILD TYPE To Be Published
8FKR	Human nucleolar pre-60S ribosomal subunit (State B1) 分子名称: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ... 著者 Vanden Broeck, A, Klinge, S. 登録日 2022-12-21 公開日 2023-07-12 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Principles of human pre-60 S biogenesis. Science, 381, 2023
8FL4	Human nuclear pre-60S ribosomal subunit (State I3) 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Vanden Broeck, A, Klinge, S. 登録日 2022-12-21 公開日 2023-07-12 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Principles of human pre-60 S biogenesis. Science, 381, 2023
6SPF	Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A. 登録日 2019-09-01 公開日 2019-10-23 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate. Proc.Natl.Acad.Sci.USA, 116, 2019
3CCQ	Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U 分子名称: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... 著者 Blaha, G, Gurel, G. 登録日 2008-02-26 公開日 2008-05-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol., 379, 2008

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