PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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8FAR	Accurate computational design of genetically encoded 3D protein crystals 分子名称: I432-1-CC 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-11-28 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.66 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
4U3H	Crystal structure of FN3con 分子名称: FN3con 著者 Porebski, B.T, McGowan, S, Buckle, A.M. 登録日 2014-07-21 公開日 2015-02-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Structural and dynamic properties that govern the stability of an engineered fibronectin type III domain. Protein Eng.Des.Sel., 28, 2015
5BVB	Engineered Digoxigenin binder DIG5.1a 分子名称: DIG5.1a, DIGOXIGENIN 著者 Doyle, L.A, Stoddard, B.L. 登録日 2015-06-04 公開日 2015-10-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. J.Chem.Inf.Model., 56, 2016
5IF6	Structure of a computationally designed 17-OHP binder 分子名称: (9beta)-17-hydroxypregn-4-ene-3,20-dione, OHP9_1c, SODIUM ION 著者 Stoddard, B.L, Doyle, L.A. 登録日 2016-02-25 公開日 2017-03-01 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Sampling and energy evaluation challenges in ligand binding protein design. Protein Sci., 26, 2017
7KXS	Computational design of constitutively active cGAS 分子名称: Cyclic GMP-AMP synthase, ZINC ION 著者 Dowling, Q, Volkman, H.E, Gray, E.E, Ovchinnikov, S, Cambier, S, Bera, A.K, Bick, M, Kang, A, Stetson, D.B, King, N.P. 登録日 2020-12-04 公開日 2021-12-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Computational design of constitutively active cGAS. Nat.Struct.Mol.Biol., 30, 2023
8SZZ	CryoEM Structure of Computationally Designed Nanocage O32-ZL4 分子名称: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION 著者 Weidle, C, Borst, A. 登録日 2023-05-30 公開日 2023-11-01 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
5IER	Structure of a computationally designed 17-OHP binder 分子名称: (9beta)-17-hydroxypregn-4-ene-3,20-dione, OHP9, SODIUM ION, ... 著者 Stoddard, B.L, Doyle, L.A. 登録日 2016-02-25 公開日 2017-03-01 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.005 Å) 主引用文献 Sampling and energy evaluation challenges in ligand binding protein design. Protein Sci., 26, 2017
7MN2	Rules for designing protein fold switches and their implications for the folding code 分子名称: Sb2 著者 He, Y, Chen, Y, Ruan, B, Choi, J, Chen, Y, Motabar, D, Solomon, T, Simmerman, R, Kauffman, T, Gallagher, T, Bryan, P, Orban, J. 登録日 2021-04-30 公開日 2022-05-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Design and characterization of a protein fold switching network. Nat Commun, 14, 2023
3VB8	Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR43 分子名称: Engineered protein, SULFATE ION 著者 Seetharaman, J, Su, M, Procko, E, Baker, D, Ciccosanti, C, Sahdev, S, Xiao, R, Everett, J.K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2011-12-31 公開日 2012-06-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Computational design of a protein-based enzyme inhibitor. J.Mol.Biol., 425, 2013
6YB2	Crystal structure of a parallel hexameric coiled coil CC-Type2-(TaId)2 分子名称: CC-Type2-(TaId)2, GLYCEROL 著者 Scott, A.J, Brady, R.L, Woolfson, D.N. 登録日 2020-03-15 公開日 2021-04-07 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Constructing ion channels from water-soluble alpha-helical barrels. Nat.Chem., 13, 2021
6YB0	Crystal structure of a parallel hexameric coiled coil CC-Type2-(TaSd)2 分子名称: CC-Type2-(TaSd)2 著者 Scott, A.J, Brady, R.L, Woolfson, D.N. 登録日 2020-03-15 公開日 2021-04-07 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Constructing ion channels from water-soluble alpha-helical barrels. Nat.Chem., 13, 2021
6YAZ	Crystal structure of a parallel hexameric coiled coil CC-Type2-(TaId)5 分子名称: CC-Type2-(TaId)5 著者 Scott, A.J, Brady, R.L, Woolfson, D.N. 登録日 2020-03-15 公開日 2021-04-07 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Constructing ion channels from water-soluble alpha-helical barrels. Nat.Chem., 13, 2021
8CUW	Accurate computational design of genetically encoded 3D protein crystals 分子名称: F4132-1-3 Chain A, F4132-1-3 Chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-17 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.55 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUU	Accurate computational design of genetically encoded 3D protein crystals 分子名称: F4132-1-0 chain A, F4132-1-0 chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-17 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUV	Accurate computational design of genetically encoded 3D protein crystals 分子名称: F4132-1 chain A, F4132-1 chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-17 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
7LZ3	Computational design of constitutively active cGAS 分子名称: Cyclic GMP-AMP synthase, GLYCEROL, ZINC ION 著者 Dowling, Q, Volkman, H.E, Gray, E.E, Ovchinnikov, S, Cambier, S, Bera, A.K, Bick, M, Kang, A, Stetson, D.B, King, N.P. 登録日 2021-03-08 公開日 2022-03-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Computational design of constitutively active cGAS. Nat.Struct.Mol.Biol., 30, 2023
1NA3	Design of Stable alpha-Helical Arrays from an Idealized TPR Motif 分子名称: 1-methylethyl 1-thio-beta-D-galactopyranoside, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, ... 著者 Main, E, Xiong, Y, Cocco, M, D'Andrea, L, Regan, L. 登録日 2002-11-26 公開日 2003-06-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif Structure, 11, 2003
1NA0	Design of Stable alpha-Helical Arrays from an Idealized TPR Motif 分子名称: 1-methylethyl 1-thio-beta-D-galactopyranoside, ACETATE ION, CHLORIDE ION, ... 著者 Main, E, Xiong, Y, Cocco, M, D'Andrea, L, Regan, L. 登録日 2002-11-26 公開日 2003-06-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif Structure, 11, 2003
2BKG	Crystal structure of E3_19 a designed ankyrin repeat protein 分子名称: SYNTHETIC CONSTRUCT ANKYRIN REPEAT PROTEIN E3_19 著者 Binz, H.K, Kohl, A, Pluckthun, A, Grutter, M.G. 登録日 2005-02-16 公開日 2006-06-21 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structure of a Consensus-Designed Ankyrin Repeat Protein: Implications for Stability Proteins: Struct., Funct., Bioinf., 65, 2006
7EQ9	Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins) 分子名称: TIP60 著者 Obata, J, Kawakami, N, Tsutsumi, A, Miyamoto, K, Kikkawa, M, Arai, R. 登録日 2021-04-30 公開日 2021-09-15 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Icosahedral 60-meric porous structure of designed supramolecular protein nanoparticle TIP60. Chem.Commun.(Camb.), 57, 2021
1QYS	Crystal structure of Top7: A computationally designed protein with a novel fold 分子名称: TOP7 著者 Kuhlman, B, Dantas, G, Ireton, G.C, Varani, G, Stoddard, B.L, Baker, D. 登録日 2003-09-11 公開日 2003-11-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Design of a Novel Globular Protein Fold with Atomic-Level Accuracy Science, 302, 2003
1EIB	CRYSTAL STRUCTURE OF CHITINASE A MUTANT D313A COMPLEXED WITH OCTA-N-ACETYLCHITOOCTAOSE (NAG)8. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHITINASE A 著者 Papanikolau, Y, Prag, G, Tavlas, G, Vorgias, C.E, Oppenheim, A.B, Petratos, K. 登録日 2000-02-25 公開日 2001-02-25 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis. Biochemistry, 40, 2001
1EZ1	STRUCTURE OF ESCHERICHIA COLI PURT-ENCODED GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE COMPLEXED WITH MG, AMPPNP, AND GAR 分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ACETATE ION, GLYCINAMIDE RIBONUCLEOTIDE, ... 著者 Thoden, J.B, Firestine, S, Nixon, A, Benkovic, S.J, Holden, H.M. 登録日 2000-05-09 公開日 2000-08-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase. Biochemistry, 39, 2000
1EHN	CRYSTAL STRUCTURE OF CHITINASE A MUTANT E315Q COMPLEXED WITH OCTA-N-ACETYLCHITOOCTAOSE (NAG)8. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHITINASE A 著者 Papanikolau, Y, Prag, G, Tavlas, G, Vorgias, C.E, Oppenheim, A.B, Petratos, K. 登録日 2000-02-22 公開日 2001-02-22 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis. Biochemistry, 40, 2001
1Y66	Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant 分子名称: 1,4-DIETHYLENE DIOXIDE, ACETIC ACID, CADMIUM ION, ... 著者 Hom, G.K, Lassila, J.K, Thomas, L.M, Mayo, S.L. 登録日 2004-12-03 公開日 2005-03-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant. Protein Sci., 14, 2005

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