PDB: 47065 件ウェブページステータス検索Chemie searchBIRD

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6QZP	High-resolution cryo-EM structure of the human 80S ribosome 分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 18S rRNA (1740-MER), 28S rRNA (3773-MER), ... 著者 Natchiar, S.K, Myasnikov, A.G, Kratzat, H, Hazemann, I, Klaholz, B.P. 登録日 2019-03-12 公開日 2019-04-24 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Visualization of chemical modifications in the human 80S ribosome structure. Nature, 551, 2017
6KHI	Supercomplex for cylic electron transport in cyanobacteria 分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... 著者 Pan, X, Cao, D, Xie, F, Zhang, X, Li, M. 登録日 2019-07-15 公開日 2020-02-12 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural basis for electron transport mechanism of complex I-like photosynthetic NAD(P)H dehydrogenase. Nat Commun, 11, 2020
6R1E	Structure of dodecin from Streptomyces coelicolor 分子名称: CHLORIDE ION, COENZYME A, FLAVIN MONONUCLEOTIDE, ... 著者 Essen, L.-O, Sander, B. 登録日 2019-03-14 公開日 2019-03-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Comparative biochemical and structural analysis of the flavin-binding dodecins fromStreptomyces davaonensisandStreptomyces coelicolorreveals striking differences with regard to multimerization. Microbiology (Reading, Engl.), 165, 2019
5OX2	Crystal structure of thymoligase, a substrate-tailored peptiligase variant 分子名称: Fragment of prodomain, SULFATE ION, Subtilisin BPN' 著者 Rozeboom, H.J, Janssen, D.B. 登録日 2017-09-05 公開日 2018-01-10 最終更新日 2018-04-18 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Design of a substrate-tailored peptiligase variant for the efficient synthesis of thymosin-alpha1. Org. Biomol. Chem., 16, 2018
5WV7	Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4A resolution 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*GP*TP*AP*CP*CP*CP*CP*GP*G)-3') 著者 Karthik, S, Thirugnanasambandam, A, Mandal, P.K, Gautham, N. 登録日 2016-12-22 公開日 2017-05-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.406 Å) 主引用文献 Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 angstrom resolution. Acta Crystallogr F Struct Biol Commun, 73, 2017
6KF4	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... 著者 Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. 登録日 2019-07-06 公開日 2020-07-01 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
5WJS	Crystal structure of oxidoreductase (short chain dehydrogenase/reductase family) from Burkholderia thailandensis complexed with NADH 分子名称: 1,2-ETHANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Oxidoreductase, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2017-07-24 公開日 2017-08-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of oxidoreductase (short chain dehydrogenase/reductase family) from Burkholderia thailandensis complexed with NADH TO BE PUBLISHED
6KQD	Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), ... 著者 Zhang, Y, Li, L, Ebright, R.H. 登録日 2019-08-17 公開日 2020-03-11 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6KW3	The ClassA RSC-Nucleosome Complex 分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC3, ... 著者 Ye, Y.P, Wu, H, Chen, K.J, Verma, N, Cairns, B, Gao, N, Chen, Z.C. 登録日 2019-09-05 公開日 2019-11-13 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (7.13 Å) 主引用文献 Structure of the RSC complex bound to the nucleosome. Science, 366, 2019
6L94	The structure of the dioxygenase ABH1 from mouse 分子名称: FE (II) ION, Nucleic acid dioxygenase ALKBH1 著者 Xie, W, Wang, C, Li, H, Zhang, Y. 登録日 2019-11-08 公開日 2020-11-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.10012341 Å) 主引用文献 ALKBH1 promotes lung cancer by regulating m6A RNA demethylation. Biochem Pharmacol, 189, 2021
6RIE	Structure of Vaccinia Virus DNA-dependent RNA polymerase co-transcriptional capping complex 分子名称: DNA-dependent RNA polymerase subunit rpo132, DNA-dependent RNA polymerase subunit rpo147, DNA-dependent RNA polymerase subunit rpo18, ... 著者 Hillen, H.S, Bartuli, J, Grimm, C, Dienemann, C, Bedenk, K, Szalar, A, Fischer, U, Cramer, P. 登録日 2019-04-23 公開日 2019-12-18 最終更新日 2019-12-25 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes. Cell, 179, 2019
5X22	Crystal structure of Thermus thermophilus transcription initiation complex with GpA and CMPcPP 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Zhang, Y, Ebright, R. 登録日 2017-01-29 公開日 2017-07-05 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Antibacterial Nucleoside-Analog Inhibitor of Bacterial RNA Polymerase. Cell, 169, 2017
6KOQ	Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 10 nt 分子名称: DNA (5'-D(*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*TP*G)-3'), DNA (5'-D(*TP*TP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Li, L, Zhang, Y. 登録日 2019-08-12 公開日 2020-03-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.353 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6KQG	Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 6 nt 分子名称: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Zhang, Y, Li, L, Ebright, R.H. 登録日 2019-08-17 公開日 2020-03-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.783 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6KRZ	Crystal structure of the human adiponectin receptor 1 D208A mutant 分子名称: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Adiponectin receptor protein 1, OLEIC ACID, ... 著者 Tanabe, H, Fujii, Y, Okada-Iwabu, M, Iwabu, M, Yamauchi, T, Kadowaki, T, Yokoyama, S. 登録日 2019-08-22 公開日 2020-08-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Human adiponectin receptor AdipoR1 assumes closed and open structures. Commun Biol, 3, 2020
5XF8	Cryo-EM structure of the Cdt1-MCM2-7 complex in AMPPNP state 分子名称: Cell division cycle protein CDT1, DNA replication licensing factor MCM2, DNA replication licensing factor MCM3, ... 著者 Zhai, Y, Cheng, E, Wu, H, Li, N, Yung, P.Y, Gao, N, Tye, B.K. 登録日 2017-04-09 公開日 2017-05-03 実験手法 ELECTRON MICROSCOPY (7.1 Å) 主引用文献 Open-ringed structure of the Cdt1-Mcm2-7 complex as a precursor of the MCM double hexamer Nat. Struct. Mol. Biol., 24, 2017
6KWY	human PA200-20S complex 分子名称: INOSITOL HEXAKISPHOSPHATE, Proteasome activator complex subunit 4, Proteasome subunit alpha type-1, ... 著者 Ouyang, S, Hongxin, G. 登録日 2019-09-09 公開日 2020-04-01 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 Cryo-EM structures of the human PA200 and PA200-20S complex reveal regulation of proteasome gate opening and two PA200 apertures. Plos Biol., 18, 2020
6RI5	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles 分子名称: 25S RNA, 5.8S rRNA, 5S rRNA, ... 著者 Kargas, V, Warren, A.J. 登録日 2019-04-23 公開日 2019-06-26 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mechanism of completion of peptidyltransferase centre assembly in eukaryotes. Elife, 8, 2019
6RXU	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1 分子名称: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019
5XIA	STRUCTURES OF D-XYLOSE ISOMERASE FROM ARTHROBACTER STRAIN B3728 CONTAINING THE INHIBITORS XYLITOL AND D-SORBITOL AT 2.5 ANGSTROMS AND 2.3 ANGSTROMS RESOLUTION, RESPECTIVELY 分子名称: D-XYLOSE ISOMERASE, MAGNESIUM ION, Xylitol 著者 Henrick, K, Collyer, C.A, Blow, D.M. 登録日 1989-07-05 公開日 1990-04-15 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 A and 2.3 A resolution, respectively. J.Mol.Biol., 208, 1989
6L7O	cryo-EM structure of cyanobacteria Fd-NDH-1L complex 分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, ... 著者 Zhang, C, Shuai, J, Wu, J, Lei, M. 登録日 2019-11-02 公開日 2020-02-19 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural insights into NDH-1 mediated cyclic electron transfer. Nat Commun, 11, 2020
6S0K	Ribosome nascent chain in complex with SecA 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Jomaa, A, Wang, S, Shan, S, Ban, N. 登録日 2019-06-17 公開日 2019-10-09 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The molecular mechanism of cotranslational membrane protein recognition and targeting by SecA. Nat.Struct.Mol.Biol., 26, 2019
6KON	Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 5 nt 分子名称: DNA (5'-D(P*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*TP*G)-3'), DNA (5'-D(P*GP*TP*TP*GP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*C)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Li, L, Zhang, Y. 登録日 2019-08-12 公開日 2020-03-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6RUR	Structure of the SCIN stabilized C3bBb convertase bound to properdin 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C3, ... 著者 Pedersen, D.V, Gadeberg, T.A.F, Andersen, G.R. 登録日 2019-05-29 公開日 2019-08-21 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Structural Basis for Properdin Oligomerization and Convertase Stimulation in the Human Complement System. Front Immunol, 10, 2019
5XKN	Crystal structure of plant receptor ERL2 in complexe with EPFL4 分子名称: EPIDERMAL PATTERNING FACTOR-like protein 4, LRR receptor-like serine/threonine-protein kinase ERL2 著者 Chai, J, Lin, G. 登録日 2017-05-08 公開日 2019-01-23 実験手法 X-RAY DIFFRACTION (3.651 Å) 主引用文献 A receptor-like protein acts as a specificity switch for the regulation of stomatal development. Genes Dev., 31, 2017

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