PDB: 5689 件ウェブページステータス検索Chemie searchBIRD

---

1NB4	HC-J4 RNA polymerase apo-form 分子名称: polyprotein 著者 Jaeger, J, O'Farrell, D.J, Trowbridge, R, Rowlands, D.J. 登録日 2002-12-02 公開日 2003-03-25 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): structural evidence for nucleotide import and de-novo initiation. J.Mol.Biol., 326, 2003
1NB6	HC-J4 RNA polymerase complexed with UTP 分子名称: MANGANESE (II) ION, URIDINE 5'-TRIPHOSPHATE, polyprotein 著者 O'Farrell, D.J, Trowbridge, R, Rowlands, D.J, Jaeger, J. 登録日 2002-12-02 公開日 2003-03-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): structural evidence for nucleotide import and de-novo initiation. J.Mol.Biol., 326, 2003
1JY4	B4DIMER: A DE NOVO DESIGNED EIGHT-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND 分子名称: B4DIMER 著者 Venkatraman, J, Nagana Gowda, G.A, Balaram, P. 登録日 2001-09-11 公開日 2002-06-12 最終更新日 2024-11-06 実験手法 SOLUTION NMR 主引用文献 Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge. J.Am.Chem.Soc., 124, 2002
1JY6	B4DIMERA: A DE NOVO DESIGNED FOUR-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND 分子名称: B4DIMER 著者 Venkatraman, J, Nagana Gowda, G.A, Balaram, P. 登録日 2001-09-11 公開日 2002-06-12 最終更新日 2024-10-30 実験手法 SOLUTION NMR 主引用文献 Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge. J.Am.Chem.Soc., 124, 2002
9FKD	Progesterone-bound DB3 Fab in complex with computationally designed DBPro1156_2 protein binder 分子名称: Anti-kappa Fab Heavy Chain, Anti-kappa Fab Light Chain, DB3 Fab Heavy chain, ... 著者 Pacesa, M, Marchand, A, Correia, B.E. 登録日 2024-06-03 公開日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Targeting protein-ligand neosurfaces using a generalizable deep learning approach To Be Published
5BYO	Computationally designed left-handed alpha/alpha toroid with 12 repeats 分子名称: dTor_12x31L 著者 Doyle, L, Stoddard, B.L, Bradley, P. 登録日 2015-06-10 公開日 2015-12-16 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.503 Å) 主引用文献 Rational design of alpha-helical tandem repeat proteins with closed architectures. Nature, 528, 2015
7KUW	High-throughput design and refinement of stable proteins using sequence-only models 分子名称: Sequence-Based Designed Protein nmt_0994_guided_02 著者 Bera, A.K, Stewart, L, Kang, A.S, Baker, D. 登録日 2020-11-25 公開日 2021-12-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 Large-scale design and refinement of stable proteins using sequence-only models. Plos One, 17, 2022
4ADP	HCV-J6 NS5B POLYMERASE V405I MUTANT 分子名称: RNA-DIRECTED RNA POLYMERASE 著者 Scrima, N, Bressanelli, S. 登録日 2012-01-02 公開日 2012-05-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.902 Å) 主引用文献 Two Crucial Early Steps in RNA Synthesis by the Hepatitis C Virus Polymerase Involve a Dual Role of Residue 405. J.Virol., 86, 2012
4AEP	HCV-JFH1 NS5B POLYMERASE STRUCTURE AT 1.8 ANGSTROM 分子名称: PHOSPHATE ION, RNA-DIRECTED RNA POLYMERASE 著者 Caillet-Saguy, C, Bressanelli, S. 登録日 2012-01-12 公開日 2012-05-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Two Crucial Early Steps in RNA Synthesis by the Hepatitis C Virus Polymerase Involve a Dual Role of Residue 405. J.Virol., 86, 2012
4AEX	HCV-JFH1 NS5B POLYMERASE STRUCTURE AT 2.4 ANGSTROM in a primitive orthorhombic space group 分子名称: PHOSPHATE ION, RNA-DIRECTED RNA POLYMERASE 著者 Caillet-Saguy, C, Bressanelli, S. 登録日 2012-01-12 公開日 2012-05-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.41 Å) 主引用文献 Two Crucial Early Steps in RNA Synthesis by the Hepatitis C Virus Polymerase Involve a Dual Role of Residue 405. J.Virol., 86, 2012
5HKN	Crystal structure de novo designed fullerene organizing protein complex with fullerene 分子名称: (C_{60}-I_{h})[5,6]fullerene, fullerene organizing protein 著者 Paul, J, Acharya, R, Kim, K.-H, Kim, Y.H, Kim, N.H, Grigoryan, G, DeGardo, W.F. 登録日 2016-01-14 公開日 2016-05-04 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.761 Å) 主引用文献 Protein-directed self-assembly of a fullerene crystal. Nat Commun, 7, 2016
5HKR	Crystal structure of de novo designed fullerene organising protein complex with fullerene 分子名称: (C_{60}-I_{h})[5,6]fullerene, fullerene organizing protein 著者 Acharya, R, Kim, Y.H, Grigoryan, G, DeGardo, W.F. 登録日 2016-01-14 公開日 2016-05-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Protein-directed self-assembly of a fullerene crystal. Nat Commun, 7, 2016
7T2Y	X-ray structure of a designed cold unfolding four helix bundle 分子名称: Designed cold unfolding four helix bundle 著者 Harrison, J.S, Kuhlman, B, Szyperski, T, Premkumar, L, Maguire, J, Pulavarti, S, Yuen, S. 登録日 2021-12-06 公開日 2022-03-02 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 From Protein Design to the Energy Landscape of a Cold Unfolding Protein. J.Phys.Chem.B, 126, 2022
7SMJ	F2N structure, protein design with deep learning 分子名称: AI-designed TIM-barrel F2N 著者 Mathews, I.I, Anand-Achim, N, Huang, P. 登録日 2021-10-26 公開日 2022-03-16 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Protein sequence design with a learned potential. Nat Commun, 13, 2022
4RJV	Crystal Structure of a De Novo Designed Ferredoxin Fold, Northeast Structural Genomics Consortium (NESG) Target OR461 分子名称: OR461 著者 O'Connell, P.T, Lin, Y.-R, Guan, R, Koga, N, Koga, R, Seetharaman, J, Janjua, H, Xiao, R, Maglaqui, M, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) 登録日 2014-10-09 公開日 2014-10-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.523 Å) 主引用文献 Northeast Structural Genomics Consortium Target OR461 To be published
1LT1	SLIDING HELIX INDUCED CHANGE OF COORDINATION GEOMETRY IN A MODEL DI-MN(II) PROTEIN 分子名称: L13G-DF1, MANGANESE (II) ION 著者 Di Costanzo, L, Geremia, S. 登録日 2002-05-20 公開日 2003-05-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Sliding helix and change of coordination geometry in a model di-MnII protein Angew.Chem.Int.Ed.Engl., 42, 2003
1N0D	Stability of cyclic beta-hairpins: Asymmetric contibutions from side chains of hydrogen bonded cross-strand residue pair 分子名称: bhp_VWLH, disulfide cyclized beta-hairpin peptide 著者 Russell, S.J, Blandl, T, Skelton, N.J, Cochran, A.G. 登録日 2002-10-11 公開日 2003-02-04 最終更新日 2024-10-30 実験手法 SOLUTION NMR 主引用文献 Stability of Cyclic Beta-Hairpins: Asymmetric Contributions From Side Chains of Hydrogen Bonded Cross-Strand Residue Pair J.Am.Chem.Soc., 125, 2003
6NL9	Crystal structure of de novo designed metal-controlled dimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, T16L, V29H, Y33H, N37L)-apo 分子名称: Immunoglobulin G-binding protein G, MAGNESIUM ION, SODIUM ION 著者 Maniaci, B, Stec, B, Huxford, T. 登録日 2019-01-08 公開日 2019-01-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
3JCI	2.9 Angstrom Resolution Cryo-EM 3-D Reconstruction of Close-packed PCV2 Virus-like Particles 分子名称: Capsid protein 著者 Liu, Z, Guo, F, Wang, F, Li, T.C, Jiang, W. 登録日 2015-12-13 公開日 2016-02-03 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 2.9 angstrom Resolution Cryo-EM 3D Reconstruction of Close-Packed Virus Particles. Structure, 24, 2016
2MXG	NMR resolved structure of VG16KRKP, an antimicrobial peptide in D8PG micelles 分子名称: antimicrobial peptide 著者 Bhunia, A, Datta, A. 登録日 2015-01-01 公開日 2015-02-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De-novo design of antimicrobial peptides:insights into membrane permeabilisation, lipopolysachharide fragmentation and application in plant disease control To be Published
6NY8	Crystal structure of computationally designed protein XAA_GVDQ with calcium 分子名称: CALCIUM ION, CHLORIDE ION, Design construct XAA_GVDQ 著者 Wei, K.Y, Bick, M.J. 登録日 2019-02-11 公開日 2020-04-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NYE	Crystal structure of computationally designed protein XAX 分子名称: Design construct XAX 著者 Wei, K.Y, Bick, M.J. 登録日 2019-02-11 公開日 2020-04-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NZ1	Crystal structure of computationally designed protein XXA_GVDQ 分子名称: Design construct XXA_GVDQ 著者 Wei, K.Y, Bick, M.J. 登録日 2019-02-12 公開日 2020-04-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NLA	Crystal structure of de novo designed metal-controlled dimer of B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, E15V, T16L, T18I, V29H, Y33H, N37L)-zinc 分子名称: CHLORIDE ION, GLYCEROL, Immunoglobulin G-binding protein G, ... 著者 Maniaci, B, Stec, B, Huxford, T. 登録日 2019-01-08 公開日 2019-01-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
6NXM	Crystal structure of computationally designed protein XAA_GVDQ 分子名称: Design construct XAA_GVDQ 著者 Wei, K.Y, Bick, M.J. 登録日 2019-02-08 公開日 2020-04-22 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020

<47484950515253545556575859606162>