PDB: 37819 件ウェブページステータス検索Chemie searchBIRD

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6UPK	Structure of FACT_subnucleosome complex 1 分子名称: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ... 著者 Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K. 登録日 2019-10-17 公開日 2019-12-11 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 FACT caught in the act of manipulating the nucleosome. Nature, 577, 2020
3B54	Saccharomyces cerevisiae nucleoside diphosphate kinase 分子名称: Nucleoside diphosphate kinase, PHOSPHATE ION 著者 Wang, H.B, Bao, R, Cheng, Y.X. 登録日 2007-10-25 公開日 2008-10-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure of Ynk1 from the yeast Saccharomyces cerevisiae Acta Crystallogr.,Sect.F, 64, 2008
8DK5	Structure of 187bp LIN28b nucleosome with site 0 mutation 分子名称: DNA (187-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Lian, T, Guan, R, Bai, Y. 登録日 2022-07-02 公開日 2023-06-28 実験手法 ELECTRON MICROSCOPY (2.71 Å) 主引用文献 Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
6ODL	Crystal structure of GluN2A agonist binding domain with 4-butyl-(S)-CCG-IV 分子名称: (1S,2R)-2-[(S)-amino(carboxy)methyl]-1-butylcyclopropane-1-carboxylic acid, Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, ... 著者 Mou, T.C, Clausen, R.P, Sprang, S.R, Hansen, K.B. 登録日 2019-03-26 公開日 2020-04-01 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Stereoselective synthesis of novel 2'-(S)-CCG-IV analogues as potent NMDA receptor agonists. Eur.J.Med.Chem., 212, 2021
7B9V	Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound 分子名称: 5' exon of UBC4 mRNA, BJ4_G0027490.mRNA.1.CDS.1, BJ4_G0054360.mRNA.1.CDS.1, ... 著者 Wilkinson, M.E, Fica, S.M, Galej, W.P, Nagai, K. 登録日 2020-12-14 公開日 2021-03-10 最終更新日 2021-04-14 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis for conformational equilibrium of the catalytic spliceosome. Mol.Cell, 81, 2021
3R9L	Crystal structure of nucleoside diphosphate kinase from Giardia lamblia featuring a disordered dinucleotide binding site 分子名称: CHLORIDE ION, Nucleoside diphosphate kinase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2011-03-25 公開日 2011-04-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal structure of nucleoside diphosphate kinase from Giardia lamblia featuring a disordered dinucleotide binding site To be Published
1KFD	CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE 分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA POLYMERASE I KLENOW FRAGMENT 著者 Beese, L.S, Friedman, J.M, Steitz, T.A. 登録日 1993-09-23 公開日 1994-06-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Crystal structures of the Klenow fragment of DNA polymerase I complexed with deoxynucleoside triphosphate and pyrophosphate. Biochemistry, 32, 1993
7YH5	MazG(Mycobacterium tuberculosis) 分子名称: MAGNESIUM ION, Nucleoside triphosphate pyrophosphohydrolase 著者 Li, J, Wang, S. 登録日 2022-07-12 公開日 2023-07-19 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural analysis of the housecleaning nucleoside triphosphate pyrophosphohydrolase MazG from Mycobacterium tuberculosis. Front Microbiol, 14, 2023
3FCV	Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dUDP 分子名称: DEOXYURIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-23 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
1MNS	ON THE ROLE OF LYSINE 166 IN THE MECHANISM OF MANDELATE RACEMASE FROM PSEUDOMONAS PUTIDA: MECHANISTIC AND CRYSTALLOGRAPHIC EVIDENCE FOR STEREOSPECIFIC ALKYLATION BY (R)-ALPHA-PHENYLGLYCIDATE 分子名称: ATROLACTIC ACID (2-PHENYL-LACTIC ACID), MAGNESIUM ION, MANDELATE RACEMASE 著者 Neidhart, D.J, Landro, J.A, Kozarich, J.W. 登録日 1993-07-06 公開日 1993-10-31 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The role of lysine 166 in the mechanism of mandelate racemase from Pseudomonas putida: mechanistic and crystallographic evidence for stereospecific alkylation by (R)-alpha-phenylglycidate. Biochemistry, 33, 1994
1N1O	Crystal Structure of a B-form DNA Duplex Containing (L)-alpha-threofuranosyl (3'-2') Nucleosides: A Four-Carbon Sugar is Easily Accommodated into the Backbone of DNA 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Wilds, C.J, Wawrzak, Z, Krishnamurthy, R, Eschenmoser, A, Egli, M. 登録日 2002-10-18 公開日 2002-11-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA J.Am.Chem.Soc., 124, 2002
3FC9	Crystal structure of the Mimivirus NDK +Kpn-N62L double mutant complexed with CDP 分子名称: CYTIDINE-5'-DIPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C. 登録日 2008-11-21 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol., 83, 2009
8C4A	Structural and interactional insights into the glideosome-associated connector from Toxoplasma gondii 分子名称: Putative anonymous antigen-1 著者 Kumar, A, Morgan, R.M.L, Matthews, S.J. 登録日 2023-01-03 公開日 2023-07-19 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.675 Å) 主引用文献 Structural and regulatory insights into the glideosome-associated connector from Toxoplasma gondii. Elife, 12, 2023
8CBQ	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Novacek, J, Veverka, V. 登録日 2023-01-25 公開日 2023-09-06 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8CBN	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Novacek, J, Veverka, V. 登録日 2023-01-25 公開日 2023-12-27 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8CTM	Crystal structure of the nucleoside hydrolase from Leishmania donovani. 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ... 著者 Chen, Y, Tolbert, W.D, Pazgier, M. 登録日 2022-05-16 公開日 2023-06-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Crystal structure of the nucleoside hydrolase from Leishmania donovani. To Be Published
6UXW	SWI/SNF nucleosome complex with ADP-BeFx 分子名称: 601 sequence bottom strand, 601 sequence top strand, ADENOSINE-5'-DIPHOSPHATE, ... 著者 He, Y, Han, Y. 登録日 2019-11-08 公開日 2020-03-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (8.96 Å) 主引用文献 Cryo-EM structure of SWI/SNF complex bound to a nucleosome. Nature, 579, 2020
2QUT	Dihydroxyacetone phosphate enamine intermediate in fructose-1,6-bisphosphate aldolase from rabbit muscle 分子名称: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase A 著者 St-Jean, M, Sygusch, J. 登録日 2007-08-06 公開日 2007-08-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Stereospecific proton transfer by a mobile catalyst in mammalian fructose-1,6-bisphosphate aldolase J.Biol.Chem., 282, 2007
6VEN	Yeast COMPASS in complex with a ubiquitinated nucleosome 分子名称: 601 DNA (146-MER), COMPASS component BRE2, COMPASS component SDC1, ... 著者 Worden, E.J, Wolberger, C. 登録日 2020-01-02 公開日 2020-01-15 最終更新日 2020-01-22 実験手法 ELECTRON MICROSCOPY (3.37 Å) 主引用文献 Structural basis for COMPASS recognition of an H2B-ubiquitinated nucleosome. Elife, 9, 2020
2F9J	3.0 angstrom resolution structure of a Y22M mutant of the spliceosomal protein p14 bound to a region of SF3b155 分子名称: Pre-mRNA branch site protein p14, Splicing factor 3B subunit 1 著者 Schellenberg, M.J, MacMillan, A.M. 登録日 2005-12-06 公開日 2006-01-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of a core spliceosomal protein interface Proc.Natl.Acad.Sci.Usa, 103, 2006
8DU4	Complex between RbBP5-WDR5 and an H2B-ubiquitinated nucleosome 分子名称: 601 DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Niklas, H.A, Rahman, S, Worden, E.J, Wolberger, C. 登録日 2022-07-26 公開日 2022-09-21 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.55 Å) 主引用文献 Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome. Proc.Natl.Acad.Sci.USA, 119, 2022
3QZT	Crystal Structure of BPTF bromo in complex with histone H4K16ac - Form II 分子名称: GLYCEROL, Histone H4, Nucleosome-remodeling factor subunit BPTF 著者 Li, H, Ruthenburg, A.J, Patel, D.J. 登録日 2011-03-07 公開日 2011-06-01 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions. Cell(Cambridge,Mass.), 145, 2011
3QZS	Crystal Structure of BPTF bromo in complex with histone H4K16ac - Form I 分子名称: Histone H4, Nucleosome-remodeling factor subunit BPTF 著者 Li, H, Ruthenburg, A.J, Patel, D.J. 登録日 2011-03-07 公開日 2011-06-01 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions. Cell(Cambridge,Mass.), 145, 2011
7C0M	Human cGAS-nucleosome complex 分子名称: Cyclic GMP-AMP synthase, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Kujirai, T, Zierhut, C, Takizawa, Y, Kim, R, Negishi, L, Uruma, N, Hirai, S, Funabiki, H, Kurumizaka, H. 登録日 2020-05-01 公開日 2020-09-16 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis for the inhibition of cGAS by nucleosomes. Science, 370, 2020
7BY0	The cryo-EM structure of CENP-A nucleosome in complex with the phosphorylated CENP-C 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Ariyoshi, M, Makino, F, Fukagawa, T. 登録日 2020-04-21 公開日 2021-02-10 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Cryo-EM structure of the CENP-A nucleosome in complex with phosphorylated CENP-C. Embo J., 40, 2021

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