Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2OFD
DownloadVisualize
BU of 2ofd by Molmil
The Crystal Structure of Sclerotium rolfsii lectin in complex with N-acetyl-D-galactosamine
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, ACETATE ION, Sclerotium rolfsii lectin
著者Leonidas, D.D, Zographos, S.E, Oikonomakos, N.G.
登録日2007-01-03
公開日2007-05-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural Basis for the Carbohydrate Recognition of the Sclerotium rolfsii Lectin
J.Mol.Biol., 368, 2007
4I8D
DownloadVisualize
BU of 4i8d by Molmil
Crystal Structure of Beta-D-glucoside glucohydrolase from Trichoderma reesei
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-D-glucoside glucohydrolase, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Helmich, K.E, Banerjee, G, Bianchetti, C.M, Gudmundsson, M, Sandgren, M, Walton, J.D, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
登録日2012-12-03
公開日2012-12-19
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Biochemical Characterization and Crystal Structures of a Fungal Family 3 beta-Glucosidase, Cel3A from Hypocrea jecorina.
J.Biol.Chem., 289, 2014
2EJN
DownloadVisualize
BU of 2ejn by Molmil
Structural characterization of the tetrameric form of the major cat allergen fel D 1
分子名称: CALCIUM ION, Major allergen I polypeptide chain 1, chain 2
著者Kaiser, L, Velickovic, T.C, Badia-Martinez, D, Adedoyin, J, Thunberg, S, Hallen, D, Berndt, K, Gronlund, H, Gafvelin, G, van Hage, M, Achour, A.
登録日2007-03-19
公開日2007-04-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structural characterization of the tetrameric form of the major cat allergen Fel d 1
J.Mol.Biol., 370, 2007
1EX1
DownloadVisualize
BU of 1ex1 by Molmil
BETA-D-GLUCAN EXOHYDROLASE FROM BARLEY
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN (BETA-D-GLUCAN EXOHYDROLASE ISOENZYME EXO1), ...
著者Varghese, J.N, Hrmova, M, Fincher, G.B.
登録日1998-11-10
公開日1999-11-17
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three-dimensional structure of a barley beta-D-glucan exohydrolase, a family 3 glycosyl hydrolase.
Structure Fold.Des., 7, 1999
1GPE
DownloadVisualize
BU of 1gpe by Molmil
GLUCOSE OXIDASE FROM PENICILLIUM AMAGASAKIENSE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Hendle, J, Kalisz, H.M, Hecht, H.J.
登録日1999-03-24
公開日1999-05-06
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献1.8 and 1.9 A resolution structures of the Penicillium amagasakiense and Aspergillus niger glucose oxidases as a basis for modelling substrate complexes.
Acta Crystallogr.,Sect.D, 55, 1999
1CF3
DownloadVisualize
BU of 1cf3 by Molmil
GLUCOSE OXIDASE FROM APERGILLUS NIGER
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, PROTEIN (GLUCOSE OXIDASE), ...
著者Hecht, H.J, Kalisz, H.
登録日1999-03-23
公開日1999-03-26
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献1.8 and 1.9 A resolution structures of the Penicillium amagasakiense and Aspergillus niger glucose oxidases as a basis for modelling substrate complexes.
Acta Crystallogr.,Sect.D, 55, 1999
2EXK
DownloadVisualize
BU of 2exk by Molmil
Structure of the family43 beta-Xylosidase E187G from geobacillus stearothermophilus in complex with xylobiose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ...
著者Brux, C, Niefind, K, Shallom-Shezifi, D, Shoham, Y, Schomburg, D.
登録日2005-11-08
公開日2006-04-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Structure of an Inverting GH43 beta-Xylosidase from Geobacillus stearothermophilus with its Substrate Reveals the Role of the Three Catalytic Residues.
J.Mol.Biol., 359, 2006
3U7B
DownloadVisualize
BU of 3u7b by Molmil
A new crystal structure of a Fusarium oxysporum GH10 xylanase reveals the presence of an extended loop on top of the catalytic cleft
分子名称: 1,2-ETHANEDIOL, ENDO-1,4-BETA-XYLANASE, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Dimarogona, M, Topakas, E, Christakopoulos, P, Chrysina, E.D.
登録日2011-10-13
公開日2012-07-18
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献The structure of a GH10 xylanase from Fusarium oxysporum reveals the presence of an extended loop on top of the catalytic cleft.
Acta Crystallogr.,Sect.D, 68, 2012
2EFU
DownloadVisualize
BU of 2efu by Molmil
The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine
分子名称: BARIUM ION, D-Amino acid amidase, PHENYLALANINE
著者Okazaki, S, Suzuki, A, Mizushima, T, Komeda, H, Asano, Y, Yamane, T.
登録日2007-02-26
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3.
Acta Crystallogr.,Sect.D, 64, 2008
2EFX
DownloadVisualize
BU of 2efx by Molmil
The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine amide
分子名称: BARIUM ION, D-amino acid amidase, PHENYLALANINE AMIDE
著者Okazaki, S, Suzuki, A, Mizushima, T, Komeda, H, Asano, Y, Yamane, T.
登録日2007-02-26
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3.
Acta Crystallogr.,Sect.D, 64, 2008
2HI8
DownloadVisualize
BU of 2hi8 by Molmil
human formylglycine generating enzyme, C336S mutant, bromide co-crystallization
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, CALCIUM ION, ...
著者Rudolph, M.G, Roeser, D.
登録日2006-06-29
公開日2007-05-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Probing the oxygen-binding site of the human formylglycine-generating enzyme using halide ions.
Acta Crystallogr.,Sect.D, 63, 2007
2HIB
DownloadVisualize
BU of 2hib by Molmil
human formylglycine generating enzyme, C336S mutant, iodide co-crystallization
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, IODIDE ION, ...
著者Rudolph, M.G, Roeser, D.
登録日2006-06-29
公開日2007-05-01
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Probing the oxygen-binding site of the human formylglycine-generating enzyme using halide ions.
Acta Crystallogr.,Sect.D, 63, 2007
2EXJ
DownloadVisualize
BU of 2exj by Molmil
Structure of the family43 beta-Xylosidase D128G mutant from geobacillus stearothermophilus in complex with xylobiose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ...
著者Brux, C, Niefind, K, Shallom-Shezifi, D, Shoham, Y, Schomburg, D.
登録日2005-11-08
公開日2006-04-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Structure of an Inverting GH43 beta-Xylosidase from Geobacillus stearothermophilus with its Substrate Reveals the Role of the Three Catalytic Residues.
J.Mol.Biol., 359, 2006
2GYI
DownloadVisualize
BU of 2gyi by Molmil
DESIGN, SYNTHESIS, AND CHARACTERIZATION OF A POTENT XYLOSE ISOMERASE INHIBITOR, D-THREONOHYDROXAMIC ACID, AND HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ENZYME-INHIBITOR COMPLEX
分子名称: 2,3,4,N-TETRAHYDROXY-BUTYRIMIDIC ACID, MAGNESIUM ION, XYLOSE ISOMERASE
著者Allen, K.N, Lavie, A, Petsko, G.A, Ringe, D.
登録日1994-09-01
公開日1995-07-10
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Design, Synthesis, and Characterization of a Potent Xylose Isomerase Inhibitor, D-Threonohydroxamic Acid, and High-Resolution X-Ray Crystallographic Structure of the Enzyme-Inhibitor Complex
Biochemistry, 34, 1995
2F8W
DownloadVisualize
BU of 2f8w by Molmil
Crystal structure of d(CACGTG)2
分子名称: 1,3-DIAMINOPROPANE, 5'-D(*CP*AP*CP*GP*TP*G)-3', SPERMINE
著者Narayana, N, Shamala, N, Ganesh, K.N, Viswamitra, M.A.
登録日2005-12-04
公開日2006-01-31
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Interaction between the Z-Type DNA Duplex and 1,3-Propanediamine: Crystal Structure of d(CACGTG)2 at 1.2 A Resolution
Biochemistry, 45, 2006
2ESC
DownloadVisualize
BU of 2esc by Molmil
Crystal structure of a 40 KDa protective signalling protein from Bovine (SPC-40) at 2.1 A resolution
分子名称: Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Kumar, J, Ethayathulla, A.S, Srivastav, D.B, Sharma, S, Srinivasan, A, Singh, T.P.
登録日2005-10-26
公開日2005-12-20
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of a bovine secretory signalling glycoprotein (SPC-40) at 2.1 Angstrom resolution.
Acta Crystallogr.,Sect.D, 62, 2006
7LSP
DownloadVisualize
BU of 7lsp by Molmil
D-Phenylseptin - The second residue of PHE of the peptide is a D-amino acid
分子名称: D-Phenylseptin
著者Munhoz, V.H.O, Verly, R.M.
登録日2021-02-18
公開日2022-11-30
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献NMR structure of D-Phenylseptin in DPC-d38.
To Be Published
4LFL
DownloadVisualize
BU of 4lfl by Molmil
Crystal Structure of D-galactose-6-phosphate isomerase in complex with D-tagatose-6-phosphate
分子名称: 6-O-phosphono-D-tagatose, Galactose-6-phosphate isomerase subunit A, Galactose-6-phosphate isomerase subunit B
著者Jung, W.S, Pan, C.H.
登録日2013-06-27
公開日2013-11-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure and substrate specificity of D-galactose-6-phosphate isomerase complexed with substrates.
Plos One, 8, 2013
1KQ0
DownloadVisualize
BU of 1kq0 by Molmil
Human methionine aminopeptidase type II in complex with D-methionine
分子名称: D-METHIONINE, Methionine aminopeptidase 2, TERTIARY-BUTYL ALCOHOL, ...
著者Nonato, M.C, Widom, J, Clardy, J.
登録日2002-01-03
公開日2003-12-09
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Human methionine aminopeptidase type 2 in complex with L- and D-methionine
Bioorg.Med.Chem.Lett., 16, 2006
3CTL
DownloadVisualize
BU of 3ctl by Molmil
Crystal structure of D-Allulose 6-Phosphate 3-Epimerase from Escherichia coli K12 complexed with D-glucitol 6-phosphate and magnesium
分子名称: D-SORBITOL-6-PHOSPHATE, D-allulose-6-phosphate 3-epimerase, MAGNESIUM ION
著者Fedorov, A.A, Fedorov, E.V, Chan, K.K, Gerlt, J.A, Almo, S.C.
登録日2008-04-14
公開日2009-02-24
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for substrate specificity in phosphate binding (beta/alpha)8-barrels: D-allulose 6-phosphate 3-epimerase from Escherichia coli K-12.
Biochemistry, 47, 2008
7SB8
DownloadVisualize
BU of 7sb8 by Molmil
d(GA(CGA)5) parallel-stranded homo-duplex
分子名称: COBALT HEXAMMINE(III), GA(CGA)5, SODIUM ION, ...
著者Luteran, E.M, Paukstelis, P.J.
登録日2021-09-24
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.317 Å)
主引用文献The parallel-stranded d(CGA) duplex is a highly predictable structural motif with two conformationally distinct strands.
Acta Crystallogr D Struct Biol, 78, 2022
2I57
DownloadVisualize
BU of 2i57 by Molmil
Crystal Structure of L-Rhamnose Isomerase from Pseudomonas stutzeri in Complex with D-Allose
分子名称: D-ALLOSE, L-rhamnose isomerase, ZINC ION
著者Yoshida, H, Yamada, M, Takada, G, Izumori, K, Kamitori, S.
登録日2006-08-24
公開日2006-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献The Structures of l-Rhamnose Isomerase from Pseudomonas stutzeri in Complexes with l-Rhamnose and d-Allose Provide Insights into Broad Substrate Specificity
J.Mol.Biol., 365, 2007
4UQC
DownloadVisualize
BU of 4uqc by Molmil
X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum at 1.30 A resolution
分子名称: CARBOHYDRATE BINDING FAMILY 6, D(-)-TARTARIC ACID, L(+)-TARTARIC ACID, ...
著者Freire, F, Verma, A.K, Goyal, A, Fontes, C.M.G.A, Najmudin, S.
登録日2014-06-22
公開日2015-06-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Conservation in the Mechanism of Glucuronoxylan Hydrolysis Revealed by the Structure of Glucuronoxylan Xylano-Hydrolase (Ctxyn30A) from Clostridium Thermocellum
Acta Crystallogr.,Sect.D, 72, 2016
7NZQ
DownloadVisualize
BU of 7nzq by Molmil
D-lyxose isomerase from the hyperthermophilic archaeon Thermofilum sp complexed with D-mannose
分子名称: 1,2-ETHANEDIOL, D-lyxose/D-mannose family sugar isomerase, DI(HYDROXYETHYL)ETHER, ...
著者De Rose, S.A, Isupov, M.N, Littlechild, J.A, Schoenheit, P.
登録日2021-03-24
公開日2021-10-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Biochemical and Structural Characterisation of a Novel D-Lyxose Isomerase From the Hyperthermophilic Archaeon Thermofilum sp.
Front Bioeng Biotechnol, 9, 2021
7NZP
DownloadVisualize
BU of 7nzp by Molmil
D-lyxose isomerase from the hyperthermophilic archaeon Thermofilum sp complexed with D-fructose
分子名称: 1,2-ETHANEDIOL, D-lyxose/D-mannose family sugar isomerase, MANGANESE (II) ION, ...
著者De Rose, S.A, Isupov, M.N, Littlechild, J.A, Schoenheit, P.
登録日2021-03-24
公開日2021-10-13
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.345 Å)
主引用文献Biochemical and Structural Characterisation of a Novel D-Lyxose Isomerase From the Hyperthermophilic Archaeon Thermofilum sp.
Front Bioeng Biotechnol, 9, 2021

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon