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7JTU
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Cytidine deaminase T6S toxin from Pseudomonas syringae
分子名称: SsdA, SsdAI
著者Bosch, D.E, Hsu, F, de Moraes, M.H, Mougous, J.D.
登録日2020-08-18
公開日2021-03-31
最終更新日2021-04-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献An interbacterial DNA deaminase toxin directly mutagenizes surviving target populations.
Elife, 10, 2021
8I4L
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BU of 8i4l by Molmil
Capsid structure of the Cyanophage P-SCSP1u
分子名称: The capsid protein(gp 19) of P-SCSP1u
著者Liu, H, Dang, S.
登録日2023-01-19
公開日2023-10-25
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.23 Å)
主引用文献Cryo-EM structure of cyanophage P-SCSP1u offers insights into DNA gating and evolution of T7-like viruses.
Nat Commun, 14, 2023
8I4M
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BU of 8i4m by Molmil
Portal-tail complex structure of the Cyanophage P-SCSP1u
分子名称: Adaptor protein(gp22) of the cyanophage P-SCSP1u, Fiber protein(gp 28) of the cyanophage P-SCSP1u, Nozzle protein(gp 23) of the cyanophage P-SCSP1u, ...
著者Liu, H, Dang, S.
登録日2023-01-19
公開日2023-11-01
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.81 Å)
主引用文献Cryo-EM structure of cyanophage P-SCSP1u offers insights into DNA gating and evolution of T7-like viruses.
Nat Commun, 14, 2023
8TR3
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BU of 8tr3 by Molmil
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CNE40 SOSIP Envelope glycoprotein gp120, ...
著者Chan, K.-W, Kong, X.P.
登録日2023-08-09
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (3.74 Å)
主引用文献Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains.
Nat Commun, 15, 2024
1Z5T
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Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I.
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(ZDU)P*(ZDU)P*CP*GP*CP*G)-3', SPERMINE, THALLIUM (I) ION
著者Moulaei, T, Maehigashi, T, Lountos, G.T, Komeda, S, Watkins, D, Stone, M.P, Marky, L.A, Li, J.S, Gold, B, Williams, L.D.
登録日2005-03-19
公開日2005-07-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of B-DNA with cations tethered in the major groove.
Biochemistry, 44, 2005
1Z19
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Crystal structure of a lambda integrase(75-356) dimer bound to a COC' core site
分子名称: 33-MER, 5'-D(*CP*TP*CP*GP*TP*TP*CP*AP*GP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(P*TP*TP*TP*AP*TP*AP*CP*TP*AP*AP*GP*TP*TP*GP*GP*CP*AP*TP*TP*A)-3', ...
著者Biswas, T, Aihara, H, Radman-Livaja, M, Filman, D, Landy, A, Ellenberger, T.
登録日2005-03-03
公開日2005-06-28
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A structural basis for allosteric control of DNA recombination by lambda integrase.
Nature, 435, 2005
3K8A
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BU of 3k8a by Molmil
Neisseria gonorrhoeae PriB
分子名称: Putative primosomal replication protein
著者Lopper, M.E, Dong, J, George, N.P, Duckett, K.L, DeBeer, M.A.
登録日2009-10-14
公開日2010-01-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The crystal structure of Neisseria gonorrhoeae PriB reveals mechanistic differences among bacterial DNA replication restart pathways
Nucleic Acids Res., 38, 2010
1Z1G
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Crystal structure of a lambda integrase tetramer bound to a Holliday junction
分子名称: 25-MER, 29-MER, 5'-D(*AP*CP*AP*GP*GP*TP*CP*AP*CP*TP*AP*TP*CP*AP*GP*TP*CP*AP*AP*AP*AP*TP*AP*CP*C)-3', ...
著者Biswas, T, Aihara, H, Radman-Livaja, M, Filman, D, Landy, A, Ellenberger, T.
登録日2005-03-03
公開日2005-06-28
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (4.4 Å)
主引用文献A structural basis for allosteric control of DNA recombination by lambda integrase.
Nature, 435, 2005
2XYY
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BU of 2xyy by Molmil
De Novo model of Bacteriophage P22 procapsid coat protein
分子名称: COAT PROTEIN
著者Chen, D.-H, Baker, M.L, Hryc, C.F, DiMaio, F, Jakana, J, Wu, W, Dougherty, M, Haase-Pettingell, C, Schmid, M.F, Jiang, W, Baker, D, King, J.A, Chiu, W.
登録日2010-11-19
公開日2011-02-02
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural Basis for Scaffolding-Mediated Assembly and Maturation of a DsDNA Virus.
Proc.Natl.Acad.Sci.USA, 108, 2011
2B0D
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BU of 2b0d by Molmil
EcoRV Restriction Endonuclease/GAATTC/Ca2+
分子名称: 5'-D(*AP*AP*AP*GP*AP*AP*TP*TP*CP*TP*T)-3', CALCIUM ION, Type II restriction enzyme EcoRV
著者Hiller, D.A, Rodriguez, A.M, Perona, J.J.
登録日2005-09-13
公開日2005-09-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Non-cognate Enzyme-DNA Complex: Structural and Kinetic Analysis of EcoRV Endonuclease Bound to the EcoRI Recognition Site GAATTC
J.Mol.Biol., 354, 2005
6E4H
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BU of 6e4h by Molmil
Solution NMR Structure of the Colied-coil PALB2 Homodimer
分子名称: Partner and localizer of BRCA2
著者Song, F, Li, M, Liu, G, Swapna, G.V.T, Xia, B, Bunting, S.F, Montelione, G.T.
登録日2018-07-17
公開日2018-10-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Antiparallel Coiled-Coil Interactions Mediate the Homodimerization of the DNA Damage-Repair Protein PALB2.
Biochemistry, 57, 2018
1L8V
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BU of 1l8v by Molmil
Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia
分子名称: MAGNESIUM ION, P4-P6 RNA ribozyme domain
著者Battle, D.J, Doudna, J.A.
登録日2002-03-21
公開日2002-08-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Specificity of RNA-RNA Helix Recognition
Proc.Natl.Acad.Sci.USA, 99, 2002
6W1X
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Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex
分子名称: CRISPR-associated endonuclease Cas6/Csy4, CRISPR-associated protein Csy1, CRISPR-associated protein Csy3, ...
著者Hirschi, M, Santiago-Frangos, A, Wilkinson, R, Golden, S.M, Wiedenheft, B, Lander, G.
登録日2020-03-04
公開日2020-05-13
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献AcrIF9 tethers non-sequence specific dsDNA to the CRISPR RNA-guided surveillance complex.
Nat Commun, 11, 2020
1LA2
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BU of 1la2 by Molmil
Structural analysis of Saccharomyces cerevisiae myo-inositol phosphate synthase
分子名称: Myo-inositol-1-phosphate synthase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Kniewel, R, Buglino, J.A, Shen, V, Chadna, T, Beckwith, A, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2002-03-27
公開日2002-04-10
最終更新日2021-02-03
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural analysis of Saccharomyces cerevisiae myo-inositol phosphate synthase
J.STRUCT.FUNCT.GENOM., 2, 2002
8DX4
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BU of 8dx4 by Molmil
Clostridioides difficile R20291 minor pilin - PilW fused with Maltose Binding Protein
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Ronish, L.A, Piepenbrink, K.
登録日2022-08-02
公開日2022-09-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.487 Å)
主引用文献Recognition of extracellular DNA by type IV pili promotes biofilm formation by Clostridioides difficile.
J.Biol.Chem., 298, 2022
2HUH
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BU of 2huh by Molmil
Crystal structure of a duf2027 family protein (bt_2179) from bacteroides thetaiotaomicron at 1.54 A resolution
分子名称: MAGNESIUM ION, Putative DNA mismatch repair protein
著者Joint Center for Structural Genomics (JCSG)
登録日2006-07-26
公開日2006-08-29
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Crystal structure of putative DNA Mismatch Repair Protein (NP_811092.1) from Bacteroides Thetaiotaomicron VPI-5482 at 1.54 A resolution
To be Published
2L3F
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BU of 2l3f by Molmil
Solution NMR Structure of a putative Uracil DNA glycosylase from Methanosarcina acetivorans, Northeast Structural Genomics Consortium Target MvR76
分子名称: Uncharacterized protein
著者Aramini, J.M, Hamilton, K, Ciccosanti, C.T, Wang, H, Lee, H.W, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2010-09-13
公開日2010-10-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of a putative Uracil DNA glycosylase from Methanosarcina acetivorans, Northeast Structural Genomics Consortium Target MvR76
To be Published
4ZYM
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BU of 4zym by Molmil
Structural implications of homo-pyrimidine base pairs on the parallel-stranded d(GAY) motif.
分子名称: DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*T)-3'), MAGNESIUM ION
著者Tripathi, S.K, Paukstelis, P.
登録日2015-05-21
公開日2015-12-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Structural Implications of Homopyrimidine Base Pairs in the Parallel-Stranded d(YGA) Motif.
Chembiochem, 17, 2016
2DHS
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BU of 2dhs by Molmil
Solution Structure of Nucleic Acid Binding Protein CUGBP1ab and its Binding Study with DNA and RNA
分子名称: CUG triplet repeat RNA-binding protein 1
著者Xia, Y.L, Jun, K.Y, Zhu, Q, Han, X.G, Zhang, H, Timchenko, L, Swanson, M, Gao, X.L.
登録日2006-03-25
公開日2007-04-24
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution Structure of Nucleic Acid Binding Protein CUGBP1ab and its Binding Study with DNA and RNA
To be Published
6F7K
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BU of 6f7k by Molmil
Crystal structure of Dettilon tailspike protein (gp208)
分子名称: 1,2-ETHANEDIOL, Tailspike, alpha-D-galactopyranose-(1-6)-beta-D-mannopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-alpha-D-galactopyranose, ...
著者Roske, Y, Heinemann, U.
登録日2017-12-11
公開日2018-12-19
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Time-resolved DNA release from an O-antigen-specificSalmonellabacteriophage with a contractile tail.
J.Biol.Chem., 294, 2019
6F7D
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BU of 6f7d by Molmil
Crystal structure of Dettilon tailspike protein (gp208)
分子名称: 1,2-ETHANEDIOL, Tailspike
著者Roske, Y, Heinemann, U.
登録日2017-12-08
公開日2018-12-19
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.634 Å)
主引用文献Time-resolved DNA release from an O-antigen-specificSalmonellabacteriophage with a contractile tail.
J.Biol.Chem., 294, 2019
7ZO1
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BU of 7zo1 by Molmil
SpCas9 bound to CD34 off-target9 DNA substrate
分子名称: CD34 off-target9 DNA non-target strand, CD34 off-target9 DNA target strand, CD34 sgRNA, ...
著者Pacesa, M, Jinek, M.
登録日2022-04-23
公開日2022-10-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for Cas9 off-target activity.
Cell, 185, 2022
2MPJ
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BU of 2mpj by Molmil
NMR structure of Xenopus RecQ4 zinc knuckle
分子名称: RECQL4-helicase-like protein, ZINC ION
著者Zucchelli, C, Marino, F, Mojumdar, A, Onesti, S, Musco, G.
登録日2014-05-23
公開日2015-08-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural and biochemical characterization of an RNA/DNA binding motif in the N-terminal domain of RecQ4 helicases
Sci Rep, 6, 2016
8AJR
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BU of 8ajr by Molmil
The Solution Structure of the Triple Mutant Methyl-CpG-Binding Domain from MeCP2
分子名称: Methyl-CpG-binding protein 2
著者Singh, H.
登録日2022-07-28
公開日2023-02-22
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Epigenetic CpG duplex marks probed by an evolved DNA reader via a well-tempered conformational plasticity.
Nucleic Acids Res., 51, 2023
1ZPQ
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STRUCTURE OF BACTERIOPHAGE LAMBDA CII protein
分子名称: Regulatory protein CII
著者Jain, D, Kim, Y, Maxwell, K.L, Beasley, S, Gussin, G.N, Edwards, A.M, Joachimiak, A, Darst, S.A, Midwest Center for Structural Genomics (MCSG)
登録日2005-05-17
公開日2005-08-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of Bacteriophage lambdacII and Its DNA Complex.
Mol.Cell, 19, 2005

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件を2024-09-04に公開中

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