PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2WBT	The Structure of a Double C2H2 Zinc Finger Protein from a Hyperthermophilic Archaeal Virus in the Absence of DNA 分子名称: B-129, ZINC ION 著者 Eilers, B.J, Menon, S, Windham, A.B, Kraft, P, Dlakic, M, Young, M.J, Lawrence, C.M. 登録日 2009-03-03 公開日 2010-03-31 最終更新日 2019-05-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The Structure of a Double C2H2 Zinc Finger Protein from a Hyperthermophilic Archaeal Virus in the Absence of DNA To be Published
5ZO5	active state of the nuclease 分子名称: MANGANESE (II) ION, Putative 3'-5' exonuclease family protein, SULFATE ION 著者 Yuan, Z.L, Gu, L.C. 登録日 2018-04-12 公開日 2019-04-10 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.297 Å) 主引用文献 NrnC, an RNase D-Like Protein FromAgrobacterium, Is a Novel Octameric Nuclease That Specifically Degrades dsDNA but Leaves dsRNA Intact. Front Microbiol, 9, 2018
7VT2	Azumapecten Farreri ferritin 分子名称: FE (III) ION, Ferritin 著者 Zhao, G, Zhang, C. 登録日 2021-10-27 公開日 2022-11-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural comparison between the DNA-protective ability of scallop and shrimp ferritin from iron-induced oxidative damage. Food Chem, 386, 2022
5D5K	Crystal Structure NLS from human PARP-2 complexed with Importin alpha delta IBB 分子名称: Importin subunit alpha-1, Poly [ADP-ribose] polymerase 2 著者 Riccio, A.A, Cingolani, G, Pascal, J.M. 登録日 2015-08-10 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 PARP-2 domain requirements for DNA damage-dependent activation and localization to sites of DNA damage. Nucleic Acids Res., 44, 2016
1VYA	Identification and characterization of the first plant G-quadruplex binding protein encoded by the Zea mays L. nucleoside diphosphate1 gene, ZmNDPK1 分子名称: Nucleoside diphosphate kinase 著者 Kopylov, M, Stroupe, M.E. 登録日 2014-08-14 公開日 2015-04-08 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The Maize (Zea mays L.) Nucleoside Diphosphate Kinase1 (ZmNDPK1) Gene Encodes a Human NM23-H2 Homologue That Binds and Stabilizes G-Quadruplex DNA. Biochemistry, 54, 2015
6TX2	Human HPF1 分子名称: Histone PARylation factor 1, SODIUM ION 著者 Suskiewicz, M.J, Ahel, I. 登録日 2020-01-13 公開日 2020-02-19 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation. Nature, 579, 2020
3V20	Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA 分子名称: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, CALCIUM ION, CHLORIDE ION, ... 著者 Manakova, E.N, Grazulis, S, Golovenko, D, Tamulaitiene, G. 登録日 2011-12-11 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease. Nucleic Acids Res., 40, 2012
1EFY	CRYSTAL STRUCTURE OF THE CATALYTIC FRAGMENT OF POLY (ADP-RIBOSE) POLYMERASE COMPLEXED WITH A BENZIMIDAZOLE INHIBITOR 分子名称: 2-(3'-METHOXYPHENYL) BENZIMIDAZOLE-4-CARBOXAMIDE, POLY (ADP-RIBOSE) POLYMERASE 著者 White, A.W, Almassy, R, Calvert, A.H, Curtin, N.J, Griffin, R.J, Hostomsky, Z, Maegley, K, Newell, D.R, Srinivasan, S, Golding, B.T. 登録日 2000-02-10 公開日 2001-01-17 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Resistance-modifying agents. 9. Synthesis and biological properties of benzimidazole inhibitors of the DNA repair enzyme poly(ADP-ribose) polymerase. J.Med.Chem., 43, 2000
7Z4D	Crystal structure of SpCas9 bound to a 10 nucleotide complementary DNA substrate 分子名称: CRISPR-associated endonuclease Cas9/Csn1, Non-target strand of 10 nucleotide complementary DNA substrate, POTASSIUM ION, ... 著者 Pacesa, M, Jinek, M. 登録日 2022-03-03 公開日 2022-08-31 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 R-loop formation and conformational activation mechanisms of Cas9. Nature, 609, 2022
7NE3	Human TET2 in complex with favourable DNA substrate. 分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (5'-D(*AP*CP*AP*GP*GP*(5CM)P*GP*CP*CP*TP*G)-3'), ... 著者 Rafalski, D, Bochtler, M. 登録日 2021-02-03 公開日 2022-03-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function. Sci Adv, 8, 2022
1PFE	Echinomycin-(gcgtacgc)2 complex 分子名称: 2-CARBOXYQUINOXALINE, 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3', CHLORIDE ION, ... 著者 Cuesta-Seijo, J.A. 登録日 2003-05-26 公開日 2004-06-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Structures of Complexes between Echinomycin and Duplex DNA. Acta Crystallogr.,Sect.D, 61, 2005
7NE6	Human TET2 in complex with unfavourable DNA substrate. 分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (5'-D(*AP*CP*AP*GP*GP*(5CM)P*GP*CP*CP*TP*G)-3'), ... 著者 Rafalski, D, Bochtler, M. 登録日 2021-02-03 公開日 2022-03-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function. Sci Adv, 8, 2022
7ARV	TwistTower_native-twist 分子名称: SCAFFOLD STRAND, STAPLE STRAND 著者 Kube, M, Kohler, F, Feigl, E, Nagel-Yuksel, B, Willner, E.M, Funke, J.J, Gerling, T, Stommer, P, Honemann, M.N, Martin, T.G, Scheres, S.H.W, Dietz, H. 登録日 2020-10-26 公開日 2020-11-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (7.4 Å) 主引用文献 Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution. Nat Commun, 11, 2020
2RSI	Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2012-03-07 公開日 2013-03-13 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT To be Published
3W2X	Crystal structure of DNA uridine endonuclease Mth212 分子名称: Exodeoxyribonuclease, FORMIC ACID, MAGNESIUM ION 著者 Tabata, N, Shida, T, Arai, R. 登録日 2012-12-06 公開日 2013-12-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of DNA uridine endonuclease Mth212 To be Published
1PO6	Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) 分子名称: 5'-D(*T*AP*GP*GP*(6MI)P*TP*TP*AP*GP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein A1 著者 Myers, J.C, Moore, S.A, Shamoo, Y. 登録日 2003-06-13 公開日 2003-11-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures J.BIOL.CHEM., 278, 2003
1UCR	Three-dimensional crystal structure of dissimilatory sulfite reductase D (DsrD) 分子名称: Protein dsvD, SULFATE ION 著者 Mizuno, N, Voordouw, G, Miki, K, Sarai, A, Higuchi, Y. 登録日 2003-04-18 公開日 2003-10-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Crystal Structure of Dissimilatory Sulfite Reductase D (DsrD) Protein-Possible Interaction with B- and Z-DNA by Its Winged-Helix Motif STRUCTURE, 11, 2003
2BEK	Structure of the bacterial chromosome segregation protein Soj 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SEGREGATION PROTEIN 著者 Leonard, T.A, Butler, P.J.G, Lowe, J. 登録日 2004-11-25 公開日 2005-01-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Bacterial Chromosome Segregation: Structure and DNA Binding of the Soj Dimer--A Conserved Biological Switch Embo J., 24, 2005
2BEJ	Structure of the bacterial chromosome segregation protein Soj 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SEGREGATION PROTEIN 著者 Leonard, T.A, Butler, P.J.G, Lowe, J. 登録日 2004-11-25 公開日 2005-01-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Bacterial Chromosome Segregation: Structure and DNA Binding of the Soj Dimer--A Conserved Biological Switch Embo J., 24, 2005
6CC2	Crystal Structure of CDC45 from Entamoeba histolytica 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Cell division control protein 45 cdc45 putative, ... 著者 Shi, K, Kurniawan, F, Kurahashi, K, Bielinsky, A, Aihara, H. 登録日 2018-02-05 公開日 2018-06-27 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Crystal Structure ofEntamoeba histolyticaCdc45 Suggests a Conformational Switch that May Regulate DNA Replication. iScience, 3, 2018
7WU8	Crystal structure of Harmonin-homology domain 2 (HHD2) of human RTEL1 分子名称: Regulator of telomere elongation helicase 1 著者 Kumar, N, Rothweiler, U, Singh, M. 登録日 2022-02-07 公開日 2023-08-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.599 Å) 主引用文献 Harmonin homology domain-mediated interaction of RTEL1 helicase with RPA and DNA provides insights into its recruitment to DNA repair sites. Nucleic Acids Res., 52, 2024
2AQF	Structural and functional analysis of ADA2 alpha swirm domain 分子名称: transcriptional adaptor 2, Ada2 alpha 著者 Qian, C, Zhang, Q, Zhou, M.-M, Zeng, L. 登録日 2005-08-17 公開日 2006-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure and chromosomal DNA binding of the SWIRM domain. Nat.Struct.Mol.Biol., 12, 2005
5AHO	Crystal structure of human 5' exonuclease Apollo 分子名称: 1,2-ETHANEDIOL, 5' EXONUCLEASE APOLLO, L(+)-TARTARIC ACID, ... 著者 Allerston, C.K, Vollmar, M, Krojer, T, Pike, A.C.W, Newman, J.A, Carpenter, E, Quigley, A, Mahajan, P, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Gileadi, O. 登録日 2015-02-06 公開日 2015-02-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 The Structures of the Snm1A and Snm1B/Apollo Nuclease Domains Reveal a Potential Basis for Their Distinct DNA Processing Activities. Nucleic Acids Res., 43, 2015
1N4B	Solution Structure of the undecamer CGAAAC*TTTCG 分子名称: 5'-D(*CP*GP*AP*AP*AP*CP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*D00*TP*TP*TP*CP*G)-3' 著者 Webba da Silva, M, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P. 登録日 2002-10-30 公開日 2003-11-04 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a DNA Duplex Containing Mispair-Aligned N4C-Ethyl-N4C Interstrand Cross-Linked Cytosines Biochemistry, 41, 2002
6OIS	CryoEM structure of Arabidopsis DR complex (DMS3-RDM1) 分子名称: Protein DEFECTIVE IN MERISTEM SILENCING 3, Protein RDM1 著者 Wongpalee, S.P, Liu, S, Zhou, Z.H, Jacobsen, S.E. 登録日 2019-04-09 公開日 2019-07-24 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun, 10, 2019

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