PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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3ZD8	Potassium bound structure of E. coli ExoIX in P1 分子名称: POTASSIUM ION, PROTEIN XNI 著者 Anstey-Gilbert, C.S, Hemsworth, G.R, Flemming, C.S, Hodskinson, M.R.G, Zhang, J, Sedelnikova, S.E, Stillman, T.J, Sayers, J.R, Artymiuk, P.J. 登録日 2012-11-26 公開日 2013-07-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The Structure of E. Coli Exoix - Implications for DNA Binding and Catalysis in Flap Endonucleases Nucleic Acids Res., 41, 2013
1T03	HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P) 分子名称: MAGNESIUM ION, POL polyprotein, Synthetic oligonucleotide primer, ... 著者 Tuske, S, Sarafianos, S.G, Ding, J, Arnold, E. 登録日 2004-04-07 公開日 2004-05-11 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structure of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir Nat.Struct.Mol.Biol., 11, 2004
2KBZ	NMR structure of protein gp15 of bacteriophage SPP1 分子名称: 15 protein (Bacteriophage SPP1 complete nucleotide sequence) 著者 Gallopin, M, Gilquin, B, Zinn-Justin, S. 登録日 2008-12-12 公開日 2009-06-09 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating Proc.Natl.Acad.Sci.USA, 106, 2009
1GID	CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING 分子名称: COBALT HEXAMMINE(III), MAGNESIUM ION, P4-P6 RNA RIBOZYME DOMAIN 著者 Cate, J.H, Gooding, A.R, Podell, E, Zhou, K, Golden, B.L, Kundrot, C.E, Cech, T.R, Doudna, J.A. 登録日 1996-08-22 公開日 1996-12-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a group I ribozyme domain: principles of RNA packing. Science, 273, 1996
3GOM	Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4 分子名称: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION 著者 Naseer, A, Cardin, C.J. 登録日 2009-03-19 公開日 2009-04-07 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand. Proc.Natl.Acad.Sci.USA, 108, 2011
2CS1	Solution structure of the HMG domain of human DNA mismatch repair protein 分子名称: PMS1 protein homolog 1 著者 Kurosaki, C, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-05-20 公開日 2005-11-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the HMG domain of human DNA mismatch repair protein To be published
8ASO	Nickel(II) bound to a non-canonical quadruplex 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3'), NICKEL (II) ION 著者 Lambert, M.C, Hall, J.P. 登録日 2022-08-19 公開日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 Identifying metal-DNA binding sites, what is the best method to get transition metals into a crystal system? To Be Published
8ASM	Cobalt(II) bound to a non-canonical quadruplex 分子名称: COBALT (II) ION, COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') 著者 Lambert, M.C, Hall, J.P. 登録日 2022-08-19 公開日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Identifying metal-DNA binding sites, what is the best method to get transition metals into a crystal system? To Be Published
2ZIE	Crystal Structure of TTHA0409, Putatative DNA Modification Methylase from Thermus thermophilus HB8- Selenomethionine derivative 分子名称: Putative modification methylase 著者 Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-02-15 公開日 2008-07-29 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008
2IUW	Crystal structure of human ABH3 in complex with iron ion and 2- oxoglutarate 分子名称: 2-OXOGLUTARIC ACID, ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3, BETA-MERCAPTOETHANOL, ... 著者 Sundheim, O, Vagbo, C.B, Bjoras, M, deSousa, M.M.L, Talstad, V, Aas, P.A, Drablos, F, Krokan, H.E, Tainer, J.A, Slupphaug, G. 登録日 2006-06-07 公開日 2006-07-26 最終更新日 2019-05-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Human Abh3 Structure and Key Residues for Oxidative Demethylation to Reverse DNA/RNA Damage. Embo J., 25, 2006
7ELN	Structure of Csy-AcrIF24-dsDNA 分子名称: 54-MER DNA, AcrIF24, CRISPR type I-F/YPEST-associated protein Csy2, ... 著者 Zhang, L, Feng, Y. 登録日 2021-04-12 公開日 2022-04-20 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Insights into the inhibition of type I-F CRISPR-Cas system by a multifunctional anti-CRISPR protein AcrIF24. Nat Commun, 13, 2022
8BAG	Copper(II) bound to a non-canonical quadruplex containing the damaged base 8-oxoguanine 分子名称: COBALT HEXAMMINE(III), COPPER (II) ION, DNA (5'-D(*(8OG)P*CP*AP*TP*GP*CP*T)-3') 著者 Lambert, M.C, Hall, J.P. 登録日 2022-10-11 公開日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.13 Å) 主引用文献 Oxidative damage induce copper(II)-DNA binding To Be Published
8BAE	Copper(II) bound to a non-canonical quadruplex 分子名称: COBALT HEXAMMINE(III), COPPER (II) ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') 著者 Lambert, M.C, Hall, J.P. 登録日 2022-10-11 公開日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Oxidative damage induce copper(II)-DNA binding To Be Published
8BAF	Non-canonical quadruplex containing the oxidation product 8-oxoguanine 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*(8OG)P*CP*AP*TP*GP*CP*T)-3') 著者 Lambert, M.C, Hall, J.P. 登録日 2022-10-11 公開日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Oxidative damage induce copper(II)-DNA binding To Be Published
454D	INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' 分子名称: 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3', DELTA-ALPHA-RH[2R,9R-DIAMINO-4,7-DIAZADECANE]9,10-PHENANTHRENEQUINONE DIIMINE 著者 Kielkopf, C.L, Erkkila, K.E, Hudson, B.P, Barton, J.K, Rees, D.C. 登録日 1999-03-03 公開日 2000-02-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Structure of a photoactive rhodium complex intercalated into DNA. Nat.Struct.Biol., 7, 2000
2N7D	Solution structure of the UBL domain of human Ddi2 分子名称: Protein DDI1 homolog 2 著者 Siva, M, Grantz Saskova, K, Veverka, V. 登録日 2015-09-08 公開日 2016-07-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog. Sci Rep, 6, 2016
6JFU	Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) 分子名称: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, non-target strand, ... 著者 Sun, W, Yang, J, Cheng, Z, Liu, C, Wang, K, Huang, X, Wang, Y. 登録日 2019-02-12 公開日 2019-11-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States. Mol.Cell, 76, 2019
8CLJ	TFIIIC TauB-DNA dimer 分子名称: General transcription factor 3C polypeptide 1, General transcription factor 3C polypeptide 2, General transcription factor 3C polypeptide 4, ... 著者 Seifert-Davila, W, Girbig, M, Hauptmann, L, Hoffmann, T, Eustermann, S, Mueller, C.W. 登録日 2023-02-16 公開日 2023-06-21 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural insights into human TFIIIC promoter recognition. Sci Adv, 9, 2023
1RZ9	Crystal Structure of AAV Rep complexed with the Rep-binding sequence 分子名称: 26-MER, Rep protein 著者 Hickman, A.B, Ronning, D.R, Perez, Z.N, Kotin, R.M, Dyda, F. 登録日 2003-12-24 公開日 2004-02-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces. Mol.Cell, 13, 2004
2JPC	SSRB DNA Binding Protein 分子名称: SsrB 著者 Liao, X, Kenney, L, Sheng, W, Integrated Center for Structure and Function Innovation (ISFI) 登録日 2007-05-03 公開日 2007-07-03 最終更新日 2023-12-20 実験手法 SOLUTION NMR 主引用文献 SSRB DNA Binding Protein To be Published
2GCL	Structure of the Pob3 Middle domain 分子名称: CHLORIDE ION, Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region 著者 VanDemark, A.P. 登録日 2006-03-14 公開日 2006-05-23 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 The Structure of the yFACT Pob3-M Domain, Its Interaction with the DNA Replication Factor RPA, and a Potential Role in Nucleosome Deposition. Mol.Cell, 22, 2006
2ZIG	Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8 分子名称: Putative modification methylase 著者 Morita, R, Ishikawa, H, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-02-15 公開日 2008-07-29 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Proteins, 73, 2008
1J5O	CRYSTAL STRUCTURE OF MET184ILE MUTANT OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH DOUBLE STRANDED DNA TEMPLATE-PRIMER 分子名称: 5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3', ANTIBODY (HEAVY CHAIN), ... 著者 Sarafianos, S.G, Das, K, Arnold, E. 登録日 2002-05-24 公開日 2002-06-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Lamivudine (3TC) resistance in HIV-1 reverse transcriptase involves steric hindrance with beta-branched amino acids. Proc.Natl.Acad.Sci.USA, 96, 1999
2WIZ	Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate 分子名称: ARCHAEAL HJC, HALF-JUNCTION 著者 Carolis, C, Koehler, C, Sauter, C, Basquin, J, Suck, D, Toeroe, I. 登録日 2009-05-18 公開日 2009-05-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate To be Published
2WJ0	Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate 分子名称: ARCHAEAL HJC, COBALT HEXAMMINE(III), HALF-JUNCTION 著者 Carolis, C, Koehler, C, Sauter, C, Basquin, J, Suck, D, Toeroe, I. 登録日 2009-05-18 公開日 2009-05-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate To be Published

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