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6EF1
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BU of 6ef1 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (5D motor state)
分子名称: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
著者de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
登録日2018-08-15
公開日2018-10-17
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.73 Å)
主引用文献Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
6EN2
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BU of 6en2 by Molmil
Structure of the Tn1549 transposon Integrase (aa 82-397, R225K) in complex with a circular intermediate DNA (CI6b-DNA)
分子名称: DI(HYDROXYETHYL)ETHER, DNA (45-MER), Int protein
著者Rubio-Cosials, A, Barabas, O.
登録日2017-10-04
公開日2018-04-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.
Cell, 173, 2018
6O82
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BU of 6o82 by Molmil
S. pombe ubiquitin E1 complex with a ubiquitin-AMP mimic
分子名称: 1,2-ETHANEDIOL, 5'-deoxy-5'-(sulfamoylamino)adenosine, MAGNESIUM ION, ...
著者Olsen, S.K, Lima, C.D.
登録日2019-03-08
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Structural basis for adenylation and thioester bond formation in the ubiquitin E1.
Proc.Natl.Acad.Sci.USA, 116, 2019
6EF2
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BU of 6ef2 by Molmil
Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)
分子名称: 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, 26S proteasome regulatory subunit 6B homolog, ...
著者de la Pena, A.H, Goodall, E.A, Gates, S.N, Lander, G.C, Martin, A.
登録日2018-08-15
公開日2018-10-17
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.27 Å)
主引用文献Substrate-engaged 26Sproteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science, 362, 2018
6EN1
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BU of 6en1 by Molmil
Structure of the Tn1549 transposon Integrase (aa 82-397, R225K) in complex with a circular intermediate DNA (CI6a-DNA)
分子名称: DI(HYDROXYETHYL)ETHER, DNA (45-MER), Int protein
著者Rubio-Cosials, A, Barabas, O.
登録日2017-10-04
公開日2018-04-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.
Cell, 173, 2018
8G6G
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BU of 8g6g by Molmil
H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 5
分子名称: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
著者Hicks, C.W, Wolberger, C.
登録日2023-02-15
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8G6Q
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BU of 8g6q by Molmil
H2AK119ub-modified nucleosome ubiquitin position 1
分子名称: 601 DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
著者Hicks, C.W, Wolberger, C.
登録日2023-02-15
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8G6S
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BU of 8g6s by Molmil
H2AK119ub-modified nucleosome ubiquitin position 2
分子名称: 601 DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
著者Hicks, C.W, Wolberger, C.
登録日2023-02-15
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
8FKR
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BU of 8fkr by Molmil
Human nucleolar pre-60S ribosomal subunit (State B1)
分子名称: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
著者Vanden Broeck, A, Klinge, S.
登録日2022-12-21
公開日2023-07-12
最終更新日2023-07-19
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献Principles of human pre-60 S biogenesis.
Science, 381, 2023
6OF0
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BU of 6of0 by Molmil
Structural basis for multidrug recognition and antimicrobial resistance by MTRR, an efflux pump regulator from Neisseria Gonorrhoeae
分子名称: HTH-type transcriptional regulator MtrR, PHOSPHATE ION
著者Beggs, G.A, Kumaraswami, M, Shafer, W, Brennan, R.G.
登録日2019-03-28
公開日2019-07-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural, Biochemical, and In Vivo Characterization of MtrR-Mediated Resistance to Innate Antimicrobials by the Human Pathogen Neisseria gonorrhoeae .
J.Bacteriol., 201, 2019
6CZR
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BU of 6czr by Molmil
The structure of amicetin bound to the 70S ribosome
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
著者Eiler, D.R, Steitz, T.A, Looper, R.E, Serrano, C.M, Kannareddy, H.R, Koch, M.R, Barrows, L.R, Testa, C.A, Sebahar, P.R.
登録日2018-04-09
公開日2019-04-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Unifying the Aminohexopyranose- and Peptidyl-Nucleoside Antibiotics: Implications for Antibiotic Design
Angew.Chem.Int.Ed.Engl., 132, 2020
8GF2
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BU of 8gf2 by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies eCR3022.20 and CC12.3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.3 Fab heavy chain, ...
著者Yuan, M, Zhu, X, Wilson, I.A.
登録日2023-03-07
公開日2023-08-23
実験手法X-RAY DIFFRACTION (2.851 Å)
主引用文献Broadening a SARS-CoV-1-neutralizing antibody for potent SARS-CoV-2 neutralization through directed evolution.
Sci.Signal., 16, 2023
6O8X
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BU of 6o8x by Molmil
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Jogl, G, Khayat, R.
登録日2019-03-12
公開日2020-09-23
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.68 Å)
主引用文献Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
8GRQ
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BU of 8grq by Molmil
Cryo-EM structure of BRCA1/BARD1 bound to H2AK127-UbcH5c-Ub nucleosome
分子名称: BRCA1-associated RING domain protein 1, Breast cancer type 1 susceptibility protein, DNA (147-MER), ...
著者Ai, H.S, Zebin, T, Zhiheng, D, Jiakun, T, Liying, Z, Jia-Bin, L, Man, P, Liu, L.
登録日2022-09-02
公開日2023-04-12
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.87 Å)
主引用文献Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination.
Chem, 2023
3TY6
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BU of 3ty6 by Molmil
ATP-dependent Protease HslV from Bacillus anthracis str. Ames
分子名称: ATP-dependent protease subunit HslV, SULFATE ION
著者Kim, Y, Mulligan, R, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2011-09-23
公開日2011-10-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.498 Å)
主引用文献ATP-dependent Protease HslV from Bacillus anthracis str. Ames
To be Published
6O7V
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BU of 6o7v by Molmil
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 1
分子名称: Putative protein YPR170W-B, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
著者Vasanthakumar, T, Bueler, S.A, Wu, D, Beilsten-Edmands, V, Robinson, C.V, Rubinstein, J.L.
登録日2019-03-08
公開日2019-04-03
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Structural comparison of the vacuolar and Golgi V-ATPases fromSaccharomyces cerevisiae.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6O8W
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BU of 6o8w by Molmil
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Jogl, G, Khayat, R.
登録日2019-03-12
公開日2020-09-23
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
6O7W
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BU of 6o7w by Molmil
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 2
分子名称: Putative protein YPR170W-B, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
著者Vasanthakumar, T, Bueler, S.A, Wu, D, Beilsten-Edmands, V, Robinson, C.V, Rubinstein, J.L.
登録日2019-03-08
公開日2019-04-03
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Structural comparison of the vacuolar and Golgi V-ATPases fromSaccharomyces cerevisiae.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6O8Y
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BU of 6o8y by Molmil
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Jogl, G, Khayat, R.
登録日2019-03-12
公開日2020-09-23
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.14 Å)
主引用文献Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Sci Rep, 10, 2020
3UTB
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BU of 3utb by Molmil
Crystal Structure of Nucleosome Core Particle Assembled with the 146b Alpha-Satellite Sequence (NCP146b)
分子名称: 146-mer DNA, Histone H2A, Histone H2B 1.1, ...
著者Chua, E.Y.D, Vasudevan, D, Davey, G.E, Wu, B, Davey, C.A.
登録日2011-11-25
公開日2012-04-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The mechanics behind DNA sequence-dependent properties of the nucleosome
Nucleic Acids Res., 40, 2012
6OIG
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BU of 6oig by Molmil
Subunit joining exposes nascent pre-40S rRNA for processing and quality control
分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
著者Rai, J, Parker, M.D, Ghalei, H, Johnson, M.C, Karbstein, K, Stroupe, M.E.
登録日2019-04-09
公開日2020-09-30
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献An open interface in the pre-80S ribosome coordinated by ribosome assembly factors Tsr1 and Dim1 enables temporal regulation of Fap7.
Rna, 27, 2021
8G6D
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BU of 8g6d by Molmil
HSV-1 Nuclear Egress Complex (SUP; UL31-R229L)
分子名称: Nuclear egress protein 1, Virion egress protein UL34, ZINC ION
著者Draganova, E.B, Gonzalez Del-Pino, G.L, Heldwein, E.E.
登録日2023-02-15
公開日2024-01-10
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.92 Å)
主引用文献The universal suppressor mutation restores membrane budding defects in the HSV-1 nuclear egress complex by stabilizing the oligomeric lattice.
Plos Pathog., 20, 2024
8G6H
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BU of 8g6h by Molmil
H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 6
分子名称: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
著者Hicks, C.W, Wolberger, C.
登録日2023-02-15
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
To Be Published
1JBR
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BU of 1jbr by Molmil
Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor
分子名称: 31-mer SRD RNA analog, 5'-R(*GP*CP*GP*CP*UP*CP*CP*UP*CP*AP*GP*UP*AP*CP*GP*AP*GP*(A23))-3', 5'-R(*GP*GP*AP*AP*CP*CP*GP*GP*AP*GP*CP*GP*C)-3', ...
著者Yang, X, Gerczei, T, Glover, L, Correll, C.C.
登録日2001-06-06
公開日2001-10-26
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping.
Nat.Struct.Biol., 8, 2001
8H2I
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BU of 8h2i by Molmil
Near-atomic structure of five-fold averaged PBCV-1 capsid
分子名称: MCPv1, MCPv2, MCPv3, ...
著者Shao, Q, Agarkova, I.V, Noel, E.A, Dunigan, D.D, Liu, Y, Wang, A, Guo, M, Xie, L, Zhao, X, Rossmann, M.G, Van Etten, J.L, Klose, T, Fang, Q.
登録日2022-10-06
公開日2022-11-16
最終更新日2023-09-06
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Near-atomic, non-icosahedrally averaged structure of giant virus Paramecium bursaria chlorella virus 1.
Nat Commun, 13, 2022

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件を2024-08-07に公開中

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