PDB: 217686 件ウェブページステータス検索Chemie searchBIRD

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7S9M	Crystal Structure of DNA Polymerase Beta with Ring open intermediate Fapy-dG base-paired with a dA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(IFP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
7AAQ	sugar/H+ symporter STP10 in outward occluded conformation 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, ACETATE ION, ... 著者 Bavnhoej, L, Paulsen, P.A, Pedersen, B.P. 登録日 2020-09-04 公開日 2021-08-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Molecular mechanism of sugar transport in plants unveiled by structures of glucose/H + symporter STP10. Nat.Plants, 7, 2021
7S9J	Crystal Structure of DNA Polymerase Beta with Fapy-dG base-paired with a dC 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*CP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
8SKW	MicroED structure of d(CGCGCG)2 Z-DNA 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE 著者 Haymaker, A, Bardin, A.A, Martynowycz, M.W, Nannenga, B.L. 登録日 2023-04-20 公開日 2023-08-16 最終更新日 2023-12-20 実験手法 ELECTRON CRYSTALLOGRAPHY (1.1 Å) 主引用文献 Structure determination of a DNA crystal by MicroED. Structure, 31, 2023
7S9P	Ternary complex of DNA Polymerase Beta with Template Fapy-dG and an incoming dCTP analog 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(FAP)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J, Smith, M.R. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
6U5Y	Discovery and optimization of salicyclic acid-derived sulfonamide inhibitors of the WDR5:MYC protein-protein interaction 分子名称: 3-{[(5-bromo-3-chloro-2-hydroxyphenyl)sulfonyl]amino}-5-(1-cyanocyclobutyl)-2-hydroxy-N-methylbenzamide, WD repeat-containing protein 5 著者 Zhao, B, Wang, F. 登録日 2019-08-28 公開日 2019-12-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.532 Å) 主引用文献 Discovery and Optimization of Salicylic Acid-Derived Sulfonamide Inhibitors of the WD Repeat-Containing Protein 5-MYC Protein-Protein Interaction. J.Med.Chem., 62, 2019
7NL4	OsNIP2;1 silicon transporter from rice 分子名称: Aquaporin NIP2-1, CADMIUM ION 著者 van den Berg, B. 登録日 2021-02-22 公開日 2021-11-03 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Basis for Silicic Acid Uptake by Higher Plants. J.Mol.Biol., 433, 2021
7S9K	Crystal Structure of DNA Polymerase Beta with Fapy-dG base-paired with a dA 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
7S9Q	Ternary complex of DNA Polymerase Beta with Template Fapy-dG and an incoming dATP analog 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, DNA (5'-D(*CP*CP*GP*AP*CP*(FAP)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J, Smith, M.R. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
8P8T	Ex vivo Ym2 crystal structure 分子名称: Chitinase-like protein 4, GLYCEROL 著者 Verschueren, K.H.G, Verstraete, K, Heyndrickx, I, Smole, U, Aegerter, H, Savvides, S.N, Lambrecht, B.N. 登録日 2023-06-02 公開日 2024-01-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Ym1 protein crystals promote type 2 immunity. Elife, 12, 2024
5HQN	Catalytic domain of murine Acid Sphingomyelinase (ASMase, ASM, SMPD1) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Gorelik, A, Illes, K, Heinz, L.X, Superti-Furga, G, Nagar, B. 登録日 2016-01-21 公開日 2016-07-06 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of mammalian acid sphingomyelinase. Nat Commun, 7, 2016
7S9L	Crystal Structure of DNA Polymerase Beta with Ring open intermediate Fapy-dG base-paired with a dC 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*CP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
6XQZ	Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae at pH 7.5 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Peptidoglycan D,D-transpeptidase PenA, ... 著者 Fenton, B.A, Zhou, P, Davies, C. 登録日 2020-07-10 公開日 2021-07-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Mutations in PBP2 from ceftriaxone-resistant Neisseria gonorrhoeae alter the dynamics of the beta 3-beta 4 loop to favor a low-affinity drug-binding state. J.Biol.Chem., 297, 2021
4WLE	Crystal structure of citrate bound MDH2 分子名称: CITRIC ACID, Malate dehydrogenase, mitochondrial 著者 Eo, Y.M, Han, B.G, Ahn, H.C. 登録日 2014-10-07 公開日 2015-11-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of citrate bound MDH2 To Be Published
8P8Q	Recombinant Ym1 crystal structure 分子名称: ACETATE ION, Chitinase-like protein 3, GLYCEROL 著者 Verschueren, K.H.G, Verstraete, K, Heyndrickx, I, Aegerter, H, Smole, U, Savvides, S.N, Lambrecht, B.N. 登録日 2023-06-02 公開日 2024-01-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.792 Å) 主引用文献 Ym1 protein crystals promote type 2 immunity. Elife, 12, 2024
8P8S	Recombinant Ym2 crystal structure 分子名称: 1,2-ETHANEDIOL, Chitinase-like protein 4 著者 Verschueren, K.H.G, Verstraete, K, Heyndrickx, I, Smole, U, Aegerter, A, Savvides, S.N, Lambrecht, B.N. 登録日 2023-06-02 公開日 2024-01-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.17 Å) 主引用文献 Ym1 protein crystals promote type 2 immunity. Elife, 12, 2024
7S9O	Binary complex of DNA Polymerase Beta with Ring open Intermediate Fapy-dG in the template position 分子名称: DNA (5'-D(*CP*CP*GP*AP*C*(IFP)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A*(SO4))-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
8P8R	Ex vivo Ym1 crystal structure 分子名称: 1,2-ETHANEDIOL, Chitinase-like protein 3 著者 Verschueren, K.H.G, Verstraete, K, Heyndrickx, I, Smole, U, Aegerter, H, Savvides, S.N, Lambrecht, B.N. 登録日 2023-06-02 公開日 2024-01-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Ym1 protein crystals promote type 2 immunity. Elife, 12, 2024
8SMU	Integral fusion of the HtaA CR2 domain from Corynebacterium diphtheriae within EGFP 分子名称: CHLORIDE ION, GLYCEROL, HtaACR2 integral fusion within enhanced green fluorescent protein, ... 著者 Mahoney, B.J, Cascio, D, Clubb, R.T. 登録日 2023-04-26 公開日 2023-09-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Development and atomic structure of a new fluorescence-based sensor to probe heme transfer in bacterial pathogens. J.Inorg.Biochem., 249, 2023
6XSP	Crystal structure of E.coli DsbA in complex with 2-(2,6-bis(3-methoxyphenyl)benzofuran-3-yl)acetic acid 分子名称: COPPER (II) ION, Thiol:disulfide interchange protein DsbA, [2,6-bis(3-methoxyphenyl)-1-benzofuran-3-yl]acetic acid 著者 Wang, G, Heras, B. 登録日 2020-07-15 公開日 2021-08-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Elaboration of a benzofuran scaffold and evaluation of binding affinity and inhibition of Escherichia coli DsbA: A fragment-based drug design approach to novel antivirulence compounds. Bioorg.Med.Chem., 45, 2021
7S0J	Crystal structure of Epstein-Barr virus gH/gL targeting antibody 769B10 分子名称: 769B10 Fab Heavy chain, 769B10 Fab Light chain, GLYCEROL 著者 Chen, W.-H, Kanekiyo, M, Cohen, J.I, Joyce, M.G. 登録日 2021-08-30 公開日 2022-11-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Epstein-Barr virus gH/gL has multiple sites of vulnerability for virus neutralization and fusion inhibition. Immunity, 55, 2022
8SE6	NKG2D complexed with inhibitor 36 分子名称: N-[(1S)-2-(dimethylamino)-2-oxo-1-{3-[3-(2,2,2-trifluoroethyl)azetidin-1-yl]phenyl}ethyl]-4'-(trifluoromethyl)[1,1'-biphenyl]-2-carboxamide, NKG2-D type II integral membrane protein, TETRAETHYLENE GLYCOL, ... 著者 Thompson, A.A, Grant, J.C, Karpowich, N.K, Sharma, S. 登録日 2023-04-08 公開日 2023-10-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 Development of small molecule inhibitors of natural killer group 2D receptor (NKG2D). Bioorg.Med.Chem.Lett., 96, 2023
5KNM	Human leukocyte antigen F (HLA-F) presents peptides and regulates immunity through interactions with NK-cell receptors 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, Leukocyte immunoglobulin-like receptor subfamily B member 1, ... 著者 Dulberger, C.L, Adams, E.J. 登録日 2016-06-28 公開日 2017-06-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Human Leukocyte Antigen F Presents Peptides and Regulates Immunity through Interactions with NK Cell Receptors. Immunity, 46, 2017
5DYW	Crystal structure of human butyrylcholinesterase in complex with N-((1-benzylpiperidin-3-yl)methyl)-N-(2-methoxyethyl)naphthalene-2-sulfonamide 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Coquelle, N, Brus, B, Colletier, J.P. 登録日 2015-09-25 公開日 2017-01-18 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Development of an in-vivo active reversible butyrylcholinesterase inhibitor. Sci Rep, 6, 2016
6OC7	HMP42 Fab in complex with Protein G 分子名称: Heavy chain of HMP42 Fab, Immunoglobulin G-binding protein G, Light chain for HMP42 Fab 著者 Bernard, S.M, Wilson, I.A. 登録日 2019-03-22 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.296 Å) 主引用文献 A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses. Science, 366, 2019

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