PDB: 45176 件ウェブページステータス検索Chemie searchBIRD

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5TJ4	Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Pro306 fused to maltose binding protein 分子名称: SODIUM ION, Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose 著者 Chao, L.K, Herzberg, O. 登録日 2016-10-03 公開日 2017-02-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5DLW	Crystal structure of Autotaxin (ENPP2) with tauroursodeoxycholic acid (TUDCA) and lysophosphatidic acid (LPA) 分子名称: (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate, 2-{[(3alpha,5beta,7alpha,8alpha,14beta,17alpha)-3,7-dihydroxy-24-oxocholan-24-yl]amino}ethanesulfonic acid, CALCIUM ION, ... 著者 Keune, W.J, Heidebrecht, T, Joosten, R.P, Perrakis, A. 登録日 2015-09-07 公開日 2016-04-13 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Steroid binding to Autotaxin links bile salts and lysophosphatidic acid signalling. Nat Commun, 7, 2016
5SVR	Crystal structure of the ATP-gated human P2X3 ion channel bound to competitive antagonist A-317491 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-{[(3-phenoxyphenyl)methyl][(1S)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}benzene-1,2,4-tricarboxylic acid, MAGNESIUM ION, ... 著者 Mansoor, S.E, Lu, W, Oosterheert, W, Shekhar, M, Tajkhorshid, E, Gouaux, E. 登録日 2016-08-07 公開日 2016-10-05 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 X-ray structures define human P2X3 receptor gating cycle and antagonist action. Nature, 538, 2016
5T4B	Human DPP4 in complex with a ligand 34a 分子名称: 2-[(3R)-3-aminopiperidin-1-yl]-3-(but-2-yn-1-yl)-5-[(4-methylquinazolin-2-yl)methyl]-3H-imidazo[2,1-b]purin-4(5H)-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Scapin, G. 登録日 2016-08-29 公開日 2016-10-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Scaffold-hopping from xanthines to tricyclic guanines: A case study of dipeptidyl peptidase 4 (DPP4) inhibitors. Bioorg.Med.Chem., 24, 2016
3CCO	Structural adaptation and conservation in quadruplex-drug recognition 分子名称: 2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone, DNA (5'-D(*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3'), POTASSIUM ION, ... 著者 Parkinson, G.N, Neidle, S. 登録日 2008-02-26 公開日 2008-09-23 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Topology conservation and loop flexibility in quadruplex-drug recognition: crystal structures of inter- and intramolecular telomeric DNA quadruplex-drug complexes J.Mol.Biol., 381, 2008
5VMA	Structure of B. pumilus GH48 in complex with a cellobio-derived isofagomine 分子名称: (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl 4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside, (3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranoside, 1,2-ETHANEDIOL, ... 著者 Alahuhta, P.M, Lunin, V.V. 登録日 2017-04-27 公開日 2018-10-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Bacillus pumilus family 48 glycoside hydrolase in complex with cellobio-derived isofagomine To Be Published
2ZSD	Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with Coenzyme A 分子名称: 1,2-ETHANEDIOL, COENZYME A, GLYCEROL, ... 著者 Chetnani, B, Das, S, Kumar, P, Surolia, A, Vijayan, M. 登録日 2008-09-05 公開日 2009-07-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mycobacterium tuberculosis pantothenate kinase: possible changes in location of ligands during enzyme action Acta Crystallogr.,Sect.D, 65, 2009
2ZKB	Urate oxidase complexed with 8-azaxanthine under 2.5 MPa oxygen pressure 分子名称: 8-AZAXANTHINE, OXYGEN MOLECULE, SODIUM ION, ... 著者 Colloc'h, N, Gabison, L, Chiadmi, M, Abraini, J.H, Prange, T. 登録日 2008-03-14 公開日 2008-10-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism. Biophys.J., 95, 2008
3D0P	Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex 分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DCP*DG)-3'), Ribonuclease H, SODIUM ION 著者 Pallan, P.S, Egli, M. 登録日 2008-05-02 公開日 2008-10-07 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex. Cell Cycle, 7, 2008
3AZ6	Crystal structure of Co/T-HEWL 分子名称: CHLORIDE ION, COBALT (II) ION, GLYCEROL, ... 著者 Abe, S, Tsujimoto, M, Yoneda, K, Ohba, M, Hikage, T, Takano, M, Kitagawa, S, Ueno, T. 登録日 2011-05-20 公開日 2012-05-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles Small, 8, 2012
3AZ7	Crystal structure of Pt/T-HEWL 分子名称: Lysozyme C, PLATINUM (II) ION, SODIUM ION 著者 Abe, S, Tsujimoto, M, Yoneda, K, Ohba, M, Hikage, T, Takano, M, Kitagawa, S, Ueno, T. 登録日 2011-05-20 公開日 2012-05-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles Small, 8, 2012
3B9G	Crystal structure of loop deletion mutant of Trypanosoma vivax nucleoside hydrolase (3GTvNH) in complex with ImmH 分子名称: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, CALCIUM ION, IAG-nucleoside hydrolase, ... 著者 Vandemeulebroucke, A, De Vos, S, Van Holsbeke, E, Steyaert, J, Versees, W. 登録日 2007-11-05 公開日 2008-04-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 A Flexible Loop as a Functional Element in the Catalytic Mechanism of Nucleoside Hydrolase from Trypanosoma vivax. J.Biol.Chem., 283, 2008
3CI3	Structure of the PduO-type ATP:co(I)rrinoid adenosyltransferase from Lactobacillus reuteri complexed with partial adenosylcobalamin and PPPi 分子名称: 5'-DEOXYADENOSINE, COBALAMIN, Cobalamin adenosyltransferase PduO-like protein, ... 著者 Maurice, M.St, Mera, P.E, Escalante-Semerena, J.C, Rayment, I. 登録日 2008-03-10 公開日 2008-05-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.11 Å) 主引用文献 Structural characterization of a human-type corrinoid adenosyltransferase confirms that coenzyme B12 is synthesized through a four-coordinate intermediate. Biochemistry, 47, 2008
3CX3	Crystal structure Analysis of the Streptococcus pneumoniae AdcAII protein 分子名称: Lipoprotein, SODIUM ION, ZINC ION 著者 Loisel, E, Durmort, C, Jacquamet, L. 登録日 2008-04-23 公開日 2008-08-05 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 AdcAII, a new pneumococcal Zn-binding protein homologous with ABC transporters: biochemical and structural analysis. J.Mol.Biol., 381, 2008
3D20	Crystal structure of HIV-1 mutant I54V and inhibitor DARUNAVIA 分子名称: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, HIV-1 Protease, ... 著者 Liu, F, Kovalesky, A.Y, Tie, Y, Ghosh, A.K, Harrison, R.W, Weber, I.T. 登録日 2008-05-07 公開日 2008-05-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Effect of flap mutations on structure of HIV-1 protease and inhibition by saquinavir and darunavir. J.Mol.Biol., 381, 2008
3D77	Crystal structure of a pheromone binding protein mutant D35N, from Apis mellifera, soaked at pH 4.0 分子名称: 1,2-ETHANEDIOL, N-BUTYL-BENZENESULFONAMIDE, Pheromone-binding protein ASP1, ... 著者 Pesenti, M.E, Spinelli, S, Bezirard, V, Briand, L, Pernollet, J.C, Tegoni, M, Cambillau, C. 登録日 2008-05-20 公開日 2009-05-26 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release J.Mol.Biol., 390, 2009
3A91	Crystal structure of hen egg white lysozyme soaked with 5mM RhCl3 分子名称: CHLORIDE ION, Lysozyme C, RHODIUM(III) ION, ... 著者 Abe, S, Koshiyama, T, Ohki, T, Hikage, T, Watanabe, Y, Ueno, T. 登録日 2009-10-15 公開日 2010-03-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Elucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces Chemistry, 16, 2010
3AGG	X-ray analysis of lysozyme in the absence of Arg 分子名称: ACETATE ION, CHLORIDE ION, Lysozyme C, ... 著者 Ito, L, Shiraki, K, Hasegawa, K, Baba, S, Kumasaka, T. 登録日 2010-03-31 公開日 2011-03-23 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine Protein Eng.Des.Sel., 24, 2011
3AHG	H64A mutant of Phosphoketolase from Bifidobacterium Breve complexed with a tricyclic ring form of thiamine diphosphate 分子名称: 1,2-ETHANEDIOL, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, MAGNESIUM ION, ... 著者 Suzuki, R, Katayama, T, Kim, B.-J, Wakagi, T, Shoun, H, Ashida, H, Yamamoto, K, Fushinobu, S. 登録日 2010-04-22 公開日 2010-08-25 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism J.Biol.Chem., 285, 2010
3AGH	X-ray analysis of lysozyme in the presence of 200 mM Arg 分子名称: ACETATE ION, CHLORIDE ION, Lysozyme C, ... 著者 Ito, L, Shiraki, K, Hasegawa, K, Baba, S, Kumasaka, T. 登録日 2010-03-31 公開日 2011-03-23 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine Protein Eng.Des.Sel., 24, 2011
3D1Y	Crystal structure of HIV-1 mutant I54V and inhibitor SAQUINA 分子名称: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide, CHLORIDE ION, HIV-1 Protease, ... 著者 Liu, F, Weber, I.T. 登録日 2008-05-06 公開日 2008-05-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Effect of flap mutations on structure of HIV-1 protease and inhibition by saquinavir and darunavir. J.Mol.Biol., 381, 2008
3CTZ	Structure of human cytosolic X-prolyl aminopeptidase 分子名称: CALCIUM ION, HEXAETHYLENE GLYCOL, MANGANESE (II) ION, ... 著者 Li, X, Lou, Z, Rao, Z. 登録日 2008-04-15 公開日 2008-05-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of human cytosolic X-prolyl aminopeptidase: a double Mn(II)-dependent dimeric enzyme with a novel three-domain subunit J.Biol.Chem., 283, 2008
3CKU	Urate oxidase from aspergillus flavus complexed with its inhibitor 8-azaxanthin and chloride 分子名称: 8-AZAXANTHINE, CHLORIDE ION, SODIUM ION, ... 著者 Colloc'h, N, Prange, T. 登録日 2008-03-17 公開日 2008-10-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism. Biophys.J., 95, 2008
3A8Z	Crystal structure of hen egg white lysozyme 分子名称: CHLORIDE ION, GLYCEROL, Lysozyme C, ... 著者 Abe, S, Koshiyama, T, Ohki, T, Hikage, T, Watanabe, Y, Ueno, T. 登録日 2009-10-15 公開日 2010-03-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Elucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces Chemistry, 16, 2010
2ZYL	Crystal structure of 3-ketosteroid-9-alpha-hydroxylase (KshA) from M. tuberculosis 分子名称: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, POSSIBLE OXIDOREDUCTASE, ... 著者 D'Angelo, I, Capyk, J, Strynadka, N, Eltis, L. 登録日 2009-01-27 公開日 2009-03-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Characterization of 3-ketosteroid 9{alpha}-hydroxylase, a Rieske oxygenase in the cholesterol degradation pathway of Mycobacterium tuberculosis J.Biol.Chem., 284, 2009

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