PDB: 71425 件ウェブページステータス検索Chemie searchBIRD

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7PPR	The structure of UDP-glucose pyrophosphorylase from Aspergillus fumigatus 分子名称: CHLORIDE ION, SULFATE ION, UTP--glucose-1-phosphate uridylyltransferase 著者 Morton, S, Raimi, O.G, Yan, K, van Aalten, D.M.F. 登録日 2021-09-14 公開日 2022-09-21 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Genetic and structural validation of UDP-glucose pyrophosphorylase as a novel antifungal target against Aspergillus fumigatus To Be Published
7PGQ	GAP-SecPH region of human neurofibromin isoform 2 in closed conformation. 分子名称: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, Neurofibromin, ZINC ION 著者 Naschberger, A, Baradaran, R, Carroni, M, Rupp, B. 登録日 2021-08-15 公開日 2022-10-26 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The structure of neurofibromin isoform 2 reveals different functional states. Nature, 599, 2021
8GF8	Cryo-EM structure of human TRPV1 in cNW11 nanodisc and soybean lipids 分子名称: (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, ... 著者 Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I. 登録日 2023-03-07 公開日 2023-05-10 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Human TRPV1 structure and inhibition by the analgesic SB-366791. Nat Commun, 14, 2023
8GF9	Cryo-EM structure of human TRPV1 in cNW11 nanodisc and POPC:POPE:POPG lipids 分子名称: (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, ... 著者 Neuberger, A, Nadezhdin, K.D, Sobolevsky, A.I. 登録日 2023-03-07 公開日 2023-05-10 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Human TRPV1 structure and inhibition by the analgesic SB-366791. Nat Commun, 14, 2023
7P3U	Chitin-active fungal AA11 LPMO 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Endoglucanase, putative 著者 Rohr, A.K, Stoepamo, F.G, Eijsink, V.G.H. 登録日 2021-07-08 公開日 2022-07-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Characterization of a lytic polysaccharide monooxygenase from Aspergillus fumigatus shows functional variation among family AA11 fungal LPMOs. J.Biol.Chem., 297, 2021
5BU9	Crystal structure of Beta-N-acetylhexosaminidase from Beutenbergia cavernae DSM 12333 分子名称: Beta-N-acetylhexosaminidase, GLYCEROL 著者 Chang, C, Tan, K, Li, H, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2015-06-03 公開日 2015-06-17 実験手法 X-RAY DIFFRACTION (2.255 Å) 主引用文献 Crystal structure of Beta-N-acetylhexosaminidase from Beutenbergia cavernae DSM 12333 To Be Published
1UKR	STRUCTURE OF ENDO-1,4-BETA-XYLANASE C 分子名称: ENDO-1,4-B-XYLANASE I 著者 Krengel, U, Dijkstra, B.W. 登録日 1996-08-23 公開日 1997-12-24 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Three-dimensional structure of Endo-1,4-beta-xylanase I from Aspergillus niger: molecular basis for its low pH optimum. J.Mol.Biol., 263, 1996
5E96	Crystal structure of aminoglycoside 6'-acetyltransferase type Ii 分子名称: 1,2-ETHANEDIOL, Aminoglycoside 6'-acetyltransferase, PHOSPHATE ION 著者 Berghuis, A.M, Burk, D.L, Baettig, O.M, Shi, K. 登録日 2015-10-14 公開日 2016-07-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Comprehensive characterization of ligand-induced plasticity changes in a dimeric enzyme. Febs J., 283, 2016
8EZV	SARS-CoV-2 Main Protease (Mpro) in Complex with ML2006a 分子名称: (1R,2S,5S)-N-{(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5 著者 Westberg, M, Fernandez, D, Lin, M.Z. 登録日 2022-11-01 公開日 2023-10-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations. Sci Transl Med, 16, 2024
8EZZ	SARS-CoV-2 Main Protease (Mpro) in Complex with ML2006a2 分子名称: (1R,2S,5S)-N-{(2S,3R)-4-(3,3-difluoroazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, CHLORIDE ION 著者 Westberg, M, Fernandez, D, Lin, M.Z. 登録日 2022-11-01 公開日 2023-10-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations. Sci Transl Med, 16, 2024
8F2D	SARS-CoV-2 Main Protease (Mpro) in Complex with ML4006a 分子名称: (1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopiperidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, CHLORIDE ION 著者 Westberg, M, Fernandez, D, Lin, M.Z. 登録日 2022-11-07 公開日 2023-10-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations. Sci Transl Med, 16, 2024
8F02	SARS-CoV-2 Main Protease (Mpro) in Complex with ML2006a4 分子名称: (1R,2S,5S)-N-{(2S,3R)-4-(3,3-dimethylazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5 著者 Westberg, M, Fernandez, D, Lin, M.Z. 登録日 2022-11-01 公開日 2023-10-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations. Sci Transl Med, 16, 2024
8F2C	SARS-CoV-2 Main Protease (Mpro) in Complex with ML3006a 分子名称: (1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, CHLORIDE ION 著者 Westberg, M, Fernandez, D, Lin, M.Z. 登録日 2022-11-07 公開日 2023-10-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 An orally bioavailable SARS-CoV-2 main protease inhibitor exhibits improved affinity and reduced sensitivity to mutations. Sci Transl Med, 16, 2024
5FLZ	Cryo-EM structure of gamma-TuSC oligomers in a closed conformation 分子名称: SPINDLE POLE BODY COMPONENT 110, SPINDLE POLE BODY COMPONENT SPC97, SPINDLE POLE BODY COMPONENT SPC98, ... 著者 Greenberg, C.H, Kollman, J, Zelter, A, Johnson, R, MacCoss, M.J, Davis, T.N, Agard, D.A, Sali, A. 登録日 2015-10-29 公開日 2016-01-13 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (6.9 Å) 主引用文献 Structure of Gamma-Tubulin Small Complex Based on a Cryo-Em Map, Chemical Cross-Links, and a Remotely Related Structure. J.Struct.Biol., 194, 2016
8U1C	A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neuraminidase, mAb-400 heavy chain, ... 著者 Ferguson, J.A, Oeverdieck, S, Ward, A.B. 登録日 2023-08-31 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface To Be Published
8U1S	A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neuraminidase, mAb-393 heavy chain, ... 著者 Ferguson, J.A, Raghavan, S.S.R, Ward, A.B. 登録日 2023-09-02 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.21 Å) 主引用文献 A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface To Be Published
8U1Q	A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neuraminidase, mAb-2D10 heavy chain, ... 著者 Ferguson, J.A, Oeverdieck, S, Ward, A.B. 登録日 2023-09-01 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 A mechanistic understanding of protective influenza B neuraminidase mAbs at the airway interface To Be Published
6N8I	RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU 分子名称: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3') 著者 Berger, K.D, Kennedy, S.D, Turner, D.H. 登録日 2018-11-29 公開日 2019-02-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. Biochemistry, 58, 2019
6N8H	RNA Duplex containing the internal loop 5'-GCAU/3'-UACG 分子名称: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3') 著者 Berger, K.D, Kennedy, S.D, Turner, D.H. 登録日 2018-11-29 公開日 2019-02-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. Biochemistry, 58, 2019
5G4M	Crystal structure of the p53 cancer mutant Y220C in complex with a monofluorinated derivative of the small molecule stabilizer Phikan083 分子名称: 1,2-ETHANEDIOL, 1-[9-(2-fluoroethyl)-9H-carbazol-3-yl]-N-methylmethanamine, CELLULAR TUMOR ANTIGEN P53, ... 著者 Joerger, A.C, Bauer, M. 登録日 2016-05-13 公開日 2016-06-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Harnessing Fluorine-Sulfur Contacts and Multipolar Interactions for the Design of P53 Mutant Y220C Rescue Drugs. Acs Chem.Biol., 11, 2016
6PU1	Cysteine stabilized hexameric HIV-1 CA in complex with SEC24C peptide 分子名称: CHLORIDE ION, Gag polyprotein, IODIDE ION, ... 著者 Lindenberger, J.J, Kvaratskhelia, M. 登録日 2019-07-16 公開日 2021-01-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Cysteine stabilized hexameric HIV-1 CA in complex with SEC24C peptide To Be Published
6N8F	RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG 分子名称: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3') 著者 Berger, K.D, Kennedy, S.D, Turner, D.H. 登録日 2018-11-29 公開日 2019-02-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. Biochemistry, 58, 2019
5EFR	Crystal Structure of a BamA-BamD fusion 分子名称: BamA-BamD fusion Protein 著者 Bergal, H.T, Hopkins, A.H, Metzner, S.I, Sousa, M.C. 登録日 2015-10-24 公開日 2016-01-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The Structure of a BamA-BamD Fusion Illuminates the Architecture of the beta-Barrel Assembly Machine Core. Structure, 24, 2016
6TAM	X-RAY STRUCTURE OF HUMAN K-RAS G12C IN COMPLEX WITH COVALENT ISOQUINOLINONE INHIBITOR (COMPOUND 3) 分子名称: 7-[2,4-bis(fluoranyl)phenyl]-3-[(3~{R})-1-propanoylpyrrolidin-3-yl]-4~{H}-isoquinolin-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ... 著者 Friberg, A, Nguyen, D. 登録日 2019-10-30 公開日 2020-04-08 最終更新日 2020-06-03 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Computationally Empowered Workflow Identifies Novel Covalent Allosteric Binders for KRASG12C. Chemmedchem, 15, 2020
5G4N	Crystal structure of the p53 cancer mutant Y220C in complex with a difluorinated derivative of the small molecule stabilizer Phikan083 分子名称: 1-[9-(2,2-difluoroethyl)-9H-carbazol-3-yl]-N-methylmethanamine, CELLULAR TUMOR ANTIGEN P53, GLYCEROL, ... 著者 Joerger, A.C, Bauer, M, Jones, R.N, Spencer, J. 登録日 2016-05-13 公開日 2016-06-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Harnessing Fluorine-Sulfur Contacts and Multipolar Interactions for the Design of P53 Mutant Y220C Rescue Drugs. Acs Chem.Biol., 11, 2016

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