PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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7XVA	Crystal structure of the Human TR4 Ligand Binding Domain in complex with the JAZF1 corepressor fragment 分子名称: Juxtaposed with another zinc finger protein 1, Nuclear receptor subfamily 2 group C member 2 著者 Liu, Y, Chen, Z. 登録日 2022-05-21 公開日 2022-12-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.856 Å) 主引用文献 Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation. Nucleic Acids Res., 51, 2023
4I2G	Binary complex of mouse TdT with ssDNA 分子名称: 5'-D(P*AP*AP*AP*AP*A)-3', COBALT (II) ION, DNA nucleotidylexotransferase, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
5XN2	HIV-1 reverse transcriptase Q151M:DNA:dGTP ternary complex 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 38-MER DNA aptamer, GLYCEROL, ... 著者 Yasutake, Y, Tamura, N, Hayashi, H, Maeda, K. 登録日 2017-05-17 公開日 2018-02-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.381 Å) 主引用文献 HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir. Sci Rep, 8, 2018
4I2H	Ternary complex of mouse TdT with ssDNA and AMPcPP 分子名称: 5'-D(P*AP*AP*AP*AP*A)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA nucleotidylexotransferase, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
4I2C	Ternary complex of mouse TdT with ssDNA and AMPcPP 分子名称: 5'-D(*AP*AP*AP*AP*A)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA nucleotidylexotransferase, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
5XN0	HIV-1 reverse transcriptase Q151M:DNA binary complex 分子名称: 38-MER DNA aptamer, GLYCEROL, Pol protein, ... 著者 Yasutake, Y, Tamura, N, Hayashi, H, Maeda, K. 登録日 2017-05-17 公開日 2018-02-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.596 Å) 主引用文献 HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir. Sci Rep, 8, 2018
3VDP	Structure and biochemical studies of the recombination mediator protein RecR in RecFOR pathway 分子名称: IMIDAZOLE, Recombination protein recR, ZINC ION 著者 Tang, Q, Yan, X.X, Liang, D.C. 登録日 2012-01-05 公開日 2012-12-19 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.451 Å) 主引用文献 RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA Nucleic Acids Res., 40, 2012
6SBW	CdbA Form One 分子名称: CdbA 著者 Lovering, A.L, Cadby, I.T. 登録日 2019-07-22 公開日 2020-04-22 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 CdbA is a DNA-binding protein and c-di-GMP receptor important for nucleoid organization and segregation in Myxococcus xanthus. Nat Commun, 11, 2020
3VE5	Structure of recombination mediator protein RecR16-196 deletion mutant 分子名称: IMIDAZOLE, Recombination protein recR, ZINC ION 著者 Tang, Q, Yan, X.X, Liang, D.C. 登録日 2012-01-07 公開日 2012-12-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA Nucleic Acids Res., 40, 2012
3VDU	Structure of recombination mediator protein RecRK21G mutant 分子名称: Recombination protein recR, ZINC ION 著者 Tang, Q, Yan, X.X, Liang, D.C. 登録日 2012-01-06 公開日 2012-12-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 RecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA Nucleic Acids Res., 40, 2012
5GKC	The crystal structure of the CPS-6 H148A/F122A 分子名称: Endonuclease G, mitochondrial 著者 Lin, J.L, Yuan, H.S. 登録日 2016-07-04 公開日 2016-11-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.892 Å) 主引用文献 Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer. Nucleic Acids Res., 44, 2016
6SBX	CdbA Form Two 分子名称: CdbA 著者 Lovering, A.L, Cadby, I.T. 登録日 2019-07-22 公開日 2020-04-22 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 CdbA is a DNA-binding protein and c-di-GMP receptor important for nucleoid organization and segregation in Myxococcus xanthus. Nat Commun, 11, 2020
8WR4	Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex) 分子名称: CbCas9 effector-1, DNA (62-MER), MAGNESIUM ION, ... 著者 Zhang, S, Lin, S, Liu, J.J.G. 登録日 2023-10-13 公開日 2024-06-05 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity. Nature, 630, 2024
6W64	Cryo-EM structure of Cas12i-crRNA-dsDNA complex in I1 state 分子名称: Cas12i, DNA (25-MER), crRNA 著者 Chang, L, Li, Z, Zhang, H. 登録日 2020-03-16 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Mechanisms for target recognition and cleavage by the Cas12i RNA-guided endonuclease. Nat.Struct.Mol.Biol., 27, 2020
3CLO	Crystal structure of putative transcriptional regulator containing a LuxR DNA binding domain (NP_811094.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.04 A resolution 分子名称: CHLORIDE ION, GLYCEROL, SODIUM ION, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2008-03-19 公開日 2008-04-01 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Crystal structure of putative transcriptional regulator containing a LuxR DNA binding domain (NP_811094.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.04 A resolution To be published
6C9L	MEF2B Apo Protein Structure 分子名称: Myocyte-specific enhancer factor 2B 著者 Lei, X, Chen, L. 登録日 2018-01-26 公開日 2018-02-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of Apo MEF2B Reveals New Insights in DNA Binding and Cofactor Interaction. Biochemistry, 57, 2018
4PBB	The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI 分子名称: SULFATE ION, Uncharacterized protein AbaSI 著者 Horton, J.R, Cheng, X. 登録日 2014-04-11 公開日 2014-06-25 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA. Nucleic Acids Res., 42, 2014
2JTG	Solution structure of the THAP-zinc finger of THAP1 分子名称: THAP domain-containing protein 1, ZINC ION 著者 Bessiere, D, Campagne, S, Milon, A, Gervais, V. 登録日 2007-07-31 公開日 2007-12-11 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure-function analysis of the THAP zinc finger of THAP1, a large C2CH DNA-binding module linked to Rb/E2F pathways J.Biol.Chem., 283, 2008
5YZP	Crystal structure of p204 HINa domain 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Ifi204 著者 Jin, T. 登録日 2017-12-15 公開日 2018-12-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.581 Å) 主引用文献 Structural mechanism of DNA recognition by the p204 HIN domain. Nucleic Acids Res., 2021
6C66	CRISPR RNA-guided surveillance complex, pre-nicking 分子名称: CRISPR-associated helicase, Cas3 family, CRISPR-associated protein, ... 著者 Xiao, Y, Luo, M, Liao, M, Ke, A. 登録日 2018-01-17 公開日 2018-06-27 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (3.66 Å) 主引用文献 Structure basis for RNA-guided DNA degradation by Cascade and Cas3. Science, 361, 2018
5YZW	Crystal structure of p204 HINb domain 分子名称: Ifi204 著者 Jin, T. 登録日 2017-12-15 公開日 2018-12-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Structural mechanism of DNA recognition by the p204 HIN domain. Nucleic Acids Res., 2021
7SR6	Human Endogenous Retrovirus (HERV-K) reverse transcriptase ternary complex with dsDNA template Primer and dNTP 分子名称: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, ... 著者 Baldwin, E.T, Nichols, C. 登録日 2021-11-08 公開日 2022-07-20 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and opportunities for HERV-K-specific inhibition. Proc.Natl.Acad.Sci.USA, 119, 2022
8QLO	CryoEM structure of the apo SPARTA (BabAgo/TIR-APAZ) complex 分子名称: Short prokaryotic Argonaute, Toll/interleukin-1 receptor domain-containing protein 著者 Finocchio, G, Koopal, B, Potocnik, A, Heijstek, C, Jinek, M, Swarts, D. 登録日 2023-09-20 公開日 2024-01-31 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.57 Å) 主引用文献 Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic Acids Res., 52, 2024
4I27	Ternary complex of mouse TdT with ssDNA and incoming nucleotide 分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*T)-3', DNA nucleotidylexotransferase, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
6S15	Pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder 分子名称: Berberine, DNA TAGGGTTAGGGT, POTASSIUM ION 著者 Ferraroni, M, Bazzicalupi, C, Gratteri, P, Papi, F. 登録日 2019-06-18 公開日 2020-06-03 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Pyridine Derivative of the Natural Alkaloid Berberine as Human Telomeric G4-DNA Binder: A Solution and Solid-State Study. Acs Med.Chem.Lett., 11, 2020

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