PDB: 37819 件ウェブページステータス検索Chemie searchBIRD

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5CCE	Joint X-ray/neutron structure of wild type MTAN complexed with SRH and adenine 分子名称: 5'-Methylthioadenosine Nucleosidase, ADENINE, S-ribosylhomocysteine, ... 著者 Banco, M.T, Kovalevsky, A.Y, Ronning, D.R. 登録日 2015-07-02 公開日 2016-11-16 最終更新日 2023-09-27 実験手法 NEUTRON DIFFRACTION (2.5 Å), X-RAY DIFFRACTION 主引用文献 Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2C40	CRYSTAL STRUCTURE OF INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FROM BACILLUS ANTHRACIS AT 2.2A RESOLUTION 分子名称: CALCIUM ION, INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY PROTEIN, alpha-D-ribofuranose 著者 Moroz, O.V, Blagova, E.V, Fogg, M.J, Levdikov, V.M, Brannigan, J.A, Wilkinson, A.J, Wilson, K.S. 登録日 2005-10-13 公開日 2007-02-27 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure of Inosine-Uridine Preferring Nucleoside Hydrolase from Bacillus Anthracis at 2.2A Resolution To be Published
7B0I	Structure of a minimal SF3B core in complex with spliceostatin A (form II) 分子名称: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3,Splicing factor 3B subunit 3,Splicing factor 3B subunit 3, ... 著者 Cretu, C, Pena, V. 登録日 2020-11-19 公開日 2021-08-04 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors. Nat Commun, 12, 2021
8TOF	Rpd3S bound to an H3K36Cme3 modified nucleosome 分子名称: Chromatin modification-related protein EAF3, DNA (176-MER), Histone H2A, ... 著者 Markert, J.W, Vos, S.M, Farnung, L. 登録日 2023-08-03 公開日 2024-01-17 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structure of the complete Saccharomyces cerevisiae Rpd3S-nucleosome complex. Nat Commun, 14, 2023
4JJN	Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome 分子名称: DNA (146-MER), Histone H2A.2, Histone H2B.2, ... 著者 Wang, F, Li, G, Mohammed, A, Lu, C, Currie, M, Johnson, A, Moazed, D. 登録日 2013-03-08 公開日 2013-05-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA. Proc.Natl.Acad.Sci.USA, 110, 2013
5CCD	Joint X-ray/neutron structure of MTAN D198N complex with SAH 分子名称: Aminodeoxyfutalosine nucleosidase, S-ADENOSYL-L-HOMOCYSTEINE 著者 Banco, M.T, Kovalevsky, A.Y, Ronning, D.R. 登録日 2015-07-01 公開日 2016-11-23 最終更新日 2024-03-06 実験手法 NEUTRON DIFFRACTION (2.2 Å), X-RAY DIFFRACTION 主引用文献 Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5L2B	Structure of CNTnw N149S, E332A in an outward-facing state 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease 著者 Hirschi, M, Johnson, Z.L, Lee, S.-Y. 登録日 2016-07-31 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature, 545, 2017
5L27	Structure of CNTnw N149L in the intermediate 1 state 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease 著者 Hirschi, M, Johnson, Z.L, Lee, S.-Y. 登録日 2016-07-31 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature, 545, 2017
5L24	Structure of CNTnw N149L in the intermediate 2 state 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease 著者 Hirschi, M, Johnson, Z.L, Lee, S.-Y. 登録日 2016-07-31 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature, 545, 2017
5L26	Structure of CNTnw in an inward-facing substrate-bound state 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease, SODIUM ION, ... 著者 Hirschi, M, Johnson, Z.L, Lee, S.-Y. 登録日 2016-07-31 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature, 545, 2017
5JYX	Crystal structure of the covalent thioimide intermediate of the archaeosine synthase QueF-Like 分子名称: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Archeaosine synthase QueF-Like, SODIUM ION 著者 Mei, X, Swairjo, M.A. 登録日 2016-05-15 公開日 2016-11-09 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.74 Å) 主引用文献 Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold. Proteins, 85, 2017
5K0P	Crystal structure of the archaeosine synthase QueF-Like in the apo form 分子名称: Archeaosine synthase QueF-Like, TETRAETHYLENE GLYCOL, THIOCYANATE ION, ... 著者 Mei, X, Swairjo, M.A. 登録日 2016-05-17 公開日 2016-11-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold. Proteins, 85, 2017
4KUD	Crystal structure of N-terminal acetylated Sir3 BAH domain D205N mutant in complex with yeast nucleosome core particle 分子名称: Histone H2A.2, Histone H2B.1, Histone H3, ... 著者 Yang, D, Fang, Q, Wang, M, Ren, R, Wang, H, He, M, Sun, Y, Yang, N, Xu, R.M. 登録日 2013-05-22 公開日 2013-08-07 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.203 Å) 主引用文献 N alpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain. Nat.Struct.Mol.Biol., 20, 2013
5C7Q	Crystal Structure of the Bdellovibrio bacteriovorus Nucleoside Diphosphate Sugar Hydrolase 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Gabelli, S.B, de la Pena, A.H, Suarez, A, Amzel, L.M. 登録日 2015-06-24 公開日 2016-01-20 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus. Plos One, 10, 2015
5C7T	Crystal Structure of the Bdellovibrio bacteriovorus Nucleoside Diphosphate Sugar Hydrolase in complex with ADP-ribose 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, ADENOSINE-5-DIPHOSPHORIBOSE, DI(HYDROXYETHYL)ETHER, ... 著者 Gabelli, S.B, de la Pena, A.H, Suarez, A, Amzel, L.M. 登録日 2015-06-24 公開日 2016-01-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorus. Plos One, 10, 2015
6FTF	Regulatory subunit of a cAMP-independent protein kinase A from Trypanosoma cruzi at 1.09 A resolution 分子名称: 1,2-ETHANEDIOL, 7-cyano-7-deazainosine, Protein kinase A regulatory subunit, ... 著者 Volpato Santos, Y, Lorentzen, E, Basquin, J, Boshart, M. 登録日 2018-02-21 公開日 2019-04-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.09151936 Å) 主引用文献 Nucleoside analogue activators of cyclic AMP-independent protein kinase A of Trypanosoma. Nat Commun, 10, 2019
5L2A	Structure of CNTnw N149S,F366A in an outward-facing state 分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease 著者 Hirschi, M, Johnson, Z.L, Lee, S.-Y. 登録日 2016-07-31 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Visualizing multistep elevator-like transitions of a nucleoside transporter. Nature, 545, 2017
2IW5	Structural Basis for CoREST-Dependent Demethylation of Nucleosomes by the Human LSD1 Histone Demethylase 分子名称: AMMONIUM ION, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Yang, M, Gocke, C.B, Luo, X, Borek, D, Tomchick, D.R, Machius, M, Otwinowski, Z, Yu, H. 登録日 2006-06-26 公開日 2006-08-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structural Basis for Corest-Dependent Demethylation of Nucleosomes by the Human Lsd1 Histone Demethylase Mol.Cell, 23, 2006
7VBM	The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv 分子名称: DNA (126-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Hirai, S, Takizawa, Y, Kujirai, T, Kurumizaka, H. 登録日 2021-08-31 公開日 2022-01-19 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant. Nucleic Acids Res., 50, 2022
8SPS	High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b 分子名称: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Lian, T, Guan, R, Bai, Y. 登録日 2023-05-03 公開日 2023-06-28 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
7WLP	Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses 分子名称: Histone H2B type 1-O,Histone H2A type 1-D, Tegument protein BKRF4 著者 Chen, J, Shan, S, Zhou, Z. 登録日 2022-01-13 公開日 2022-11-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses. Proc.Natl.Acad.Sci.USA, 119, 2022
9D5K	Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing an expanded cytidine analog at the -1 position of the guide strand 分子名称: INOSITOL HEXAKISPHOSPHATE, Isoform 4 of Double-stranded RNA-specific editase 1, MAGNESIUM ION, ... 著者 Fisher, A.J, Cheng, J, Manjunath, A, Campbell, K. 登録日 2024-08-13 公開日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.697 Å) 主引用文献 Nucleoside Analogs in ADAR Guide Strands Enable Editing at 5'-G A Sites. Biomolecules, 14, 2024
7DBH	The mouse nucleosome structure containing H3mm18 分子名称: DNA (126-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Hirai, S, Takizawa, Y, Kujirai, T, Kurumizaka, H. 登録日 2020-10-20 公開日 2022-01-19 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant. Nucleic Acids Res., 50, 2022
9D5J	Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing deoxyinosine at the -1 position of the guide strand 分子名称: 1,2-ETHANEDIOL, INOSITOL HEXAKISPHOSPHATE, Isoform 4 of Double-stranded RNA-specific editase 1, ... 著者 Fisher, A.J, Cheng, J, Manjunath, A, Campbell, K. 登録日 2024-08-13 公開日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Nucleoside Analogs in ADAR Guide Strands Enable Editing at 5'-G A Sites. Biomolecules, 14, 2024
8YBK	Cryo-EM structure of the human nucleosome containing the H3.1 E97K mutant 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Kimura, T, Hirai, S, Kujirai, T, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2024-02-14 公開日 2024-07-24 最終更新日 2024-09-11 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Cryo-EM structure and biochemical analyses of the nucleosome containing the cancer-associated histone H3 mutation E97K. Genes Cells, 29, 2024

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