PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8IIL	Complex form of MsmUdgX H109G mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109G 分子名称: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIF	H109A mutant of uracil DNA glycosylase X 分子名称: GLYCEROL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIJ	H109G mutant of uracil DNA glycosylase X 分子名称: BETA-MERCAPTOETHANOL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIP	Complex form of MsmUdgX H109Q mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109Q 分子名称: BETA-MERCAPTOETHANOL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, ... 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
3FC3	Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I 分子名称: 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3', Restriction endonuclease Hpy99I, ... 著者 Sokolowska, M, Czapinska, H, Bochtler, M. 登録日 2008-11-21 公開日 2009-03-31 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA. Nucleic Acids Res., 37, 2009
8IIN	Complex form of MsmUdgX H109K mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109K 分子名称: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8III	Complex form of MsmUdgX H109C mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109C 分子名称: GLYCEROL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, ... 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIG	Complex form of MsmUdgX H109A mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by UdgX H109A 分子名称: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL 著者 Aroli, S. 登録日 2023-02-24 公開日 2023-06-21 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8TG8	Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 3 分子名称: Recombination protein bet, TRP-MET-ASP-PHE-ASP-ASP-ASP-ILE-PRO-PHE 著者 Bell, C.E. 登録日 2023-07-12 公開日 2024-03-13 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.576 Å) 主引用文献 Structural Basis for the Interaction of Red beta Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein. J.Mol.Biol., 436, 2024
8D8M	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence grown in a calcium chloride crystallization solution. 分子名称: CALCIUM ION, DNA (5'-D(CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*GP*A)-3'), DNA (5'-D(GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*GP*GP*A)-3'), ... 著者 Orun, A.R, Snow, C.D. 登録日 2022-06-08 公開日 2023-06-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Designed crystalline assemblies of protein and DNA enable site-specific installation of a guest protein, DNA, and small molecule. To Be Published
1AA3	C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: RECA 著者 Aihara, H, Ito, Y, Kurumizaka, H, Terada, T, Yokoyama, S, Shibata, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 1997-01-22 公開日 1997-07-23 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing. J.Mol.Biol., 274, 1997
6CC8	Crystal structure MBD3 MBD domain in complex with methylated CpG DNA 分子名称: Methyl-CpG-binding domain protein 3, UNKNOWN ATOM OR ION, methylated CpG DNA 著者 Liu, K, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2018-02-06 公開日 2018-04-04 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural analyses reveal that MBD3 is a methylated CG binder. Febs J., 286, 2019
7ODY	Cyanophage S-2L MazG-like pyrophosphohydrolase bound to dGDP and three catalytic Mn2+ ions per active site 分子名称: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, MazG-like pyrophosphohydrolase (MazZ), ... 著者 Czernecki, D, Delarue, M. 登録日 2021-04-30 公開日 2021-09-01 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA. Nat Commun, 12, 2021
2FOK	STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI 分子名称: FOKI RESTRICTION ENDONUCLEASE 著者 Wah, D.A, Bitinaite, J, Schildkraut, I, Aggarwal, A.K. 登録日 1998-03-30 公開日 1998-06-17 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of FokI has implications for DNA cleavage. Proc.Natl.Acad.Sci.Usa, 95, 1998
6VR4	Virion-packaged DNA-dependent RNA polymerase of crAss-like phage phi14:2 分子名称: CHLORIDE ION, DNA-dependent RNA polymerase, SODIUM ION 著者 Leiman, P.G, Sokolova, M.L. 登録日 2020-02-06 公開日 2020-07-29 最終更新日 2021-01-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structure and function of virion RNA polymerase of a crAss-like phage. Nature, 589, 2020
7ODX	Cyanophage S-2L Succinoaminodeoxyadenylate synthetase (PurZ) bound to dGMP and dATP as an energy donor 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, Succinoaminodeoxyadenylate synthetase (PurZ) 著者 Czernecki, D, Delarue, M. 登録日 2021-04-30 公開日 2021-09-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.69617081 Å) 主引用文献 Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA. Nat Commun, 12, 2021
4N6R	Crystal structure of VosA-VelB-complex 分子名称: SULFATE ION, VelB, VosA 著者 Ahmed, Y.L, Dickmanns, A, Neumann, P, Ficner, R. 登録日 2013-10-14 公開日 2014-01-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-kappa B. Plos Biol., 11, 2013
4M35	Crystal structure of gated-pore mutant H126/141D of second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chandran, A.V, Vijayabaskar, M.S, Roy, S, Balaram, H, Vishveshwara, S, Vijayan, M, Chatterji, D. 登録日 2013-08-06 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A histidine aspartate ionic lock gates the iron passage in miniferritins from Mycobacterium smegmatis J.Biol.Chem., 289, 2014
4M34	Crystal structure of gated-pore mutant D138H of second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chandran, A.V, Vijayabaskar, M.S, Roy, S, Balaram, H, Vishveshwara, S, Vijayan, M, Chatterji, D. 登録日 2013-08-06 公開日 2014-03-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A histidine aspartate ionic lock gates the iron passage in miniferritins from Mycobacterium smegmatis J.Biol.Chem., 289, 2014
5K8J	Structure of Caulobacter crescentus VapBC1 (apo form) 分子名称: GLYCEROL, Ribonuclease VapC, VapB family protein 著者 Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. 登録日 2016-05-30 公開日 2016-12-28 最終更新日 2018-01-17 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017
5A77	Crystal structure of the homing endonuclease I-CvuI in complex with I- CreI target (C1221) in the presence of 2 mM Mg revealing DNA cleaved 分子名称: 10MER DNA, 5'-D(*GP*AP*CP*GP*TP*TP*TP*TP* GP*AP*DGP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3', 14MER DNA, ... 著者 Molina, R, Redondo, P, LopezMendez, B, Villate, M, Merino, N, Blanco, F.J, Valton, J, Grizot, S, Duchateau, P, Prieto, J, Montoya, G. 登録日 2015-07-03 公開日 2015-09-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of the Homing Endonuclease I-Cvui Provides a New Template for Genome Modification J.Biol.Chem., 290, 2015
3M9Q	Drosophila MSL3 chromodomain 分子名称: Protein male-specific lethal-3 著者 Kim, D, Huang, P, Rastinejad, F, Khorasanizadeh, S. 登録日 2010-03-22 公開日 2010-07-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain. Nat.Struct.Mol.Biol., 17, 2010
6UIS	HIV-1 M184V reverse transcriptase-DNA complex with dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Primer DNA, ... 著者 Lansdon, E.B. 登録日 2019-10-01 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.74833822 Å) 主引用文献 Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance. Commun Biol, 2, 2019
6JG9	Crystal structure of AimR in complex with arbitrium peptide 分子名称: AimR transcriptional regulator, arbitrium peptide 著者 Guan, Z.Y, Pei, K, Zou, T.T. 登録日 2019-02-13 公開日 2019-07-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.998 Å) 主引用文献 Structural insights into DNA recognition by AimR of the arbitrium communication system in the SPbeta phage. Cell Discov, 5, 2019
6JG5	Crystal structure of AimR 分子名称: AimR transcriptional regulator 著者 Guan, Z.Y, Pei, K, Zou, T.T. 登録日 2019-02-13 公開日 2019-07-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.221 Å) 主引用文献 Structural insights into DNA recognition by AimR of the arbitrium communication system in the SPbeta phage. Cell Discov, 5, 2019

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