PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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6WU9	50S subunit of 70S Ribosome Enterococcus faecalis MultiBody refinement 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Jogl, G, Khayat, R. 登録日 2020-05-04 公開日 2020-11-04 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
8WB0	De novo transcribing complex 17 (TC17), the early elongation complex with Pol II positioned 17nt downstream of TSS 分子名称: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... 著者 Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. 登録日 2023-09-08 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Structural visualization of transcription initiation in action. Science, 382, 2023
8WAU	De novo transcribing complex 11 (TC11), the early elongation complex with Pol II positioned 11nt downstream of TSS 分子名称: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... 著者 Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. 登録日 2023-09-08 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 ELECTRON MICROSCOPY (2.78 Å) 主引用文献 Structural visualization of transcription initiation in action. Science, 382, 2023
5FKI	Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data 分子名称: CHLORIDE ION, UL31, UL34 protein, ... 著者 Hagen, C, Dent, K.C, Zeev Ben Mordehai, T, Vasishtan, D, Antonin, W, Mettenleiter, T.C, Gruenewald, K. 登録日 2015-10-16 公開日 2016-03-16 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (35 Å) 主引用文献 Crystal Structure of the Herpesvirus Nuclear Egress Complex Provides Insights Into Inner Nuclear Membrane Remodelling Cell Rep., 13, 2015
6NSH	Modified ASL proline bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-24 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.397 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6XIR	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress 分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Zhou, Y, Bartesaghi, A, Silva, G.M. 登録日 2020-06-21 公開日 2020-08-26 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
6XQE	Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Batool, Z, Lomakin, I.B, Bunick, C.G, Polikanov, Y.S. 登録日 2020-07-09 公開日 2020-08-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 117, 2020
6CFJ	Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Tereshchenkov, A.G, Dobosz-Bartoszek, M, Osterman, I.A, Marks, J, Sergeeva, V.A, Kasatsky, P, Komarova, E.S, Stavrianidi, A.N, Rodin, I.A, Konevega, A.L, Sergiev, P.V, Sumbatyan, N.V, Mankin, A.S, Bogdanov, A.A, Polikanov, Y.S. 登録日 2018-02-15 公開日 2018-03-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome. J. Mol. Biol., 430, 2018
6XRE	Structure of the p53/RNA polymerase II assembly 分子名称: Cellular tumor antigen p53, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Liou, S.-H, Singh, S, Singer, R.H, Coleman, R.A, Liu, W. 登録日 2020-07-12 公開日 2021-03-24 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structure of the p53/RNA polymerase II assembly. Commun Biol, 4, 2021
5FJ1	Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group 分子名称: HMKT-7, MAGNESIUM ION, SODIUM ION 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-05 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
8UKT	RNA polymerase II elongation complex with Fapy-dG lesion with AMP added 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Hou, P, Oh, J, Wang, D. 登録日 2023-10-15 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKS	RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry 分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Hou, P, Oh, J, Wang, D. 登録日 2023-10-15 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
6WQQ	Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Belousoff, M.J. 登録日 2020-04-29 公開日 2020-06-03 最終更新日 2020-12-16 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Characterization of the Core Ribosomal Binding Region for the Oxazolidone Family of Antibiotics Using Cryo-EM. Acs Pharmacol Transl Sci, 3, 2020
5FCJ	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M. 登録日 2015-12-15 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency. J.Mol.Biol., 428, 2016
6XR2	Computationally designed right-handed alpha/alpha homotrimeric toroid with 3 repeats per subunit 分子名称: dTor_3x57R 著者 Hallinan, J.P, Doyle, L, Bradley, P, Stoddard, B.L. 登録日 2020-07-10 公開日 2021-07-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces. Commun Biol, 4, 2021
7N56	Crystal Structure of deoxyuridine 5'-triphosphate nucleotidohydrolase from Rickettsia prowazekii str. Madrid E 分子名称: Deoxyuridine 5'-triphosphate nucleotidohydrolase, SULFATE ION 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-06-04 公開日 2021-07-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structure of deoxyuridine 5'-triphosphate nucleotidohydrolase from Rickettsia prowazekii str. Madrid E to be published
6ECJ	Human cytochrome c G41T 分子名称: Cytochrome c, HEME C 著者 Fellner, M, Jameson, G.N.L, Ledgerwood, E.C, Wilbanks, S.M. 登録日 2018-08-08 公開日 2019-08-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Altered structure and dynamics of pathogenic cytochrome c variants correlate with increased apoptotic activity. Biochem.J., 2021
7EGB	TFIID-based holo PIC on SCP promoter 分子名称: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... 著者 Chen, X, Wu, Z, Hou, H, Qi, Y, Wang, X, Li, J, Xu, Y. 登録日 2021-03-24 公開日 2021-05-05 最終更新日 2023-07-26 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021
5HCQ	Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A. 登録日 2016-01-04 公開日 2016-04-06 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition. Nucleic Acids Res., 44, 2016
6YS3	Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide 分子名称: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Schulte, L, Reitz, J, Kudlinzki, D, Hodirnau, V.V, Frangakis, A, Schwalbe, H. 登録日 2020-04-20 公開日 2020-09-30 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide Nat Commun, 2020
7EGC	p53-bound TFIID-based holo PIC on HDM2 promoter 分子名称: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... 著者 Chen, X, Wu, Z, Hou, H, Qi, Y, Wang, X, Li, J, Xu, Y. 登録日 2021-03-24 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021
5I2D	Crystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPo 分子名称: DNA (72-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Feng, Y, Zhang, Y, Ebright, R.H. 登録日 2016-02-08 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (4.405 Å) 主引用文献 Structural basis of transcription activation. Science, 352, 2016
5OKZ	Crystal Strucrure of the Mpp6 Exosome complex 分子名称: CHLORIDE ION, Exosome complex component CSL4, Exosome complex component MTR3, ... 著者 Falk, S, Ebert, J, Conti, E. 登録日 2017-07-26 公開日 2017-08-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.200039 Å) 主引用文献 Mpp6 Incorporation in the Nuclear Exosome Contributes to RNA Channeling through the Mtr4 Helicase. Cell Rep, 20, 2017
8WAV	De novo transcribing complex 12 (TC12), the early elongation complex with Pol II positioned 12nt downstream of TSS 分子名称: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... 著者 Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. 登録日 2023-09-08 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 ELECTRON MICROSCOPY (2.72 Å) 主引用文献 Structural visualization of transcription initiation in action. Science, 382, 2023
8WAZ	De novo transcribing complex 16 (TC16), the early elongation complex with Pol II positioned 16nt downstream of TSS 分子名称: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... 著者 Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. 登録日 2023-09-08 公開日 2023-12-06 最終更新日 2024-01-03 実験手法 ELECTRON MICROSCOPY (2.76 Å) 主引用文献 Structural visualization of transcription initiation in action. Science, 382, 2023

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