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7N7E
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Solution structure of the MYC promoter G-quadruplex in complex with berberine: conformer B
分子名称: BERBERINE, Myc2345
著者Dickerhoff, J, Yang, D.
登録日2021-06-10
公開日2021-11-03
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Berberine Molecular Recognition of the Parallel MYC G-Quadruplex in Solution.
J.Med.Chem., 64, 2021
7N7D
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Solution structure of the MYC promoter G-quadruplex in complex with berberine: conformer A
分子名称: BERBERINE, Myc2345
著者Dickerhoff, J, Yang, D.
登録日2021-06-10
公開日2021-11-03
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Berberine Molecular Recognition of the Parallel MYC G-Quadruplex in Solution.
J.Med.Chem., 64, 2021
310D
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Crystal structure of 2'-O-Me(CGCGCG)2: an RNA duplex at 1.3 A resolution. Hydration pattern of 2'-O-methylated RNA
分子名称: MAGNESIUM ION, RNA (5'-R(*(OMC)P*(OMG)P*(OMC)P*(OMG)P*(OMC)P*(OMG))-3')
著者Adamiak, D.A, Milecki, J, Adamiak, R.W, Dauter, Z, Rypniewski, W.R.
登録日1996-05-25
公開日1997-06-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA.
Nucleic Acids Res., 25, 1997
7V3T
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BU of 7v3t by Molmil
Solution structure of thrombin binding aptamer G-quadruplex bound a self-adaptive small molecule with rotated ligands
分子名称: 11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene, TBA G4 DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
著者Liu, W, Zhu, B.C, Mao, Z.W.
登録日2021-08-11
公開日2022-09-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of a thrombin binding aptamer complex with a non-planar platinum(ii) compound.
Chem Sci, 13, 2022
7SKC
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Solution structure of spider toxin Ssp1a
分子名称: Ssp1a toxin
著者Wilson, D.T, Daly, N.L, Dongol, Y, Lewis, R.J.
登録日2021-10-20
公開日2022-02-02
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Voltage-Gated Sodium Channel Modulation by a New Spider Toxin Ssp1a Isolated From an Australian Theraphosid.
Front Pharmacol, 12, 2021
7QP2
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1-deazaguanosine modified-RNA Sarcin Ricin Loop
分子名称: GLYCEROL, RNA (27-MER)
著者Ennifar, E, Micura, R, Bereiter, R, Renard, E, Kreutz, C.
登録日2021-12-30
公開日2022-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献1-Deazaguanosine-Modified RNA: The Missing Piece for Functional RNA Atomic Mutagenesis.
J.Am.Chem.Soc., 144, 2022
7OIO
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Solution structure of Legionella pneumophila LspC
分子名称: General secretion pathway protein C
著者Portlock, T.J, Garnett, J.A.
登録日2021-05-12
公開日2022-06-01
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution structure of Legionella pneumophila LspC
To Be Published
7QJF
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Llp mutant C1G, lytic conversion lipoprotein of phage T5
分子名称: Lytic conversion lipoprotein
著者Degroux, S, Mestdach, E, Vives, C, Le Roy, A, Salmon, L, Herrman, T, Breyton, C.
登録日2021-12-16
公開日2022-12-28
実験手法SOLUTION NMR
主引用文献Llp mutant C1G, lytic conversion lipoprotein of phage T5
To Be Published
7W9N
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THE STRUCTURE OF OBA33-OTA COMPLEX
分子名称: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, OTA DNA APTAMER (33-MER)
著者Xu, G.H, Li, C.G.
登録日2021-12-10
公開日2022-01-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Insights into the Mechanism of High-Affinity Binding of Ochratoxin A by a DNA Aptamer.
J.Am.Chem.Soc., 144, 2022
7QSH
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23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648
分子名称: 23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragment, 9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one, GLYCEROL, ...
著者Ennifar, E, Micura, R.
登録日2022-01-13
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
7QUA
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Duplex RNA containing Xanthosine-Cytosine base pairs
分子名称: MAGNESIUM ION, RNA (5'-R(*CP*GP*CP*GP*(XAN)P*AP*UP*UP*AP*GP*CP*G)-3'), SODIUM ION
著者Ennifar, E, Micura, R.
登録日2022-01-17
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
7QTN
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Duplex RNA containing Xanthosine-Cytosine base pairs
分子名称: RNA (5'-R(*GP*GP*UP*AP*(RY)P*UP*GP*CP*GP*(XAN)P*UP*AP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*AP*CP*UP*GP*CP*GP*(XAM)P*UP*AP*CP*C)-3')
著者Ennifar, E, Micura, R.
登録日2022-01-14
公開日2023-01-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
7QS6
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Solution structure of thanatin-like derivative 7 in complex with E.coli LptA
分子名称: Lipopolysaccharide export system protein LptA, Thanatin-like derivative
著者Moehle, K, Zerbe, O.
登録日2022-01-12
公開日2023-05-10
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献Peptidomimetic antibiotics disrupt the lipopolysaccharide transport bridge of drug-resistant Enterobacteriaceae.
Sci Adv, 9, 2023
4BYA
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BU of 4bya by Molmil
Calmodulin, C-terminal domain, M144H mutant
分子名称: CALCIUM ION, CALMODULIN, C-TERMINAL DOMAIN, ...
著者Moroz, Y.S, Wu, Y, van Nuland, N.A.J, Korendovych, I.V.
登録日2013-07-18
公開日2014-06-18
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献New Tricks for Old Proteins: Single Mutations in a Nonenzymatic Protein Give Rise to Various Enzymatic Activities.
J.Am.Chem.Soc., 137, 2015
7T1P
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Solution structure of 7SK stem-loop 1 with HIV-1 Tat Finland Arginine Rich Motif
分子名称: RNA (56-MER), Tat Finland Arginine Rich Motif
著者Pham, V.V, Gao, M, D'Souza, V.M.
登録日2021-12-02
公開日2022-09-14
最終更新日2024-05-15
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.
Commun Biol, 5, 2022
7T6G
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BU of 7t6g by Molmil
Truncated Ac-AIP-2
分子名称: Truncated Ac-AIP-2
著者Daly, N.L, Cobos, C.
登録日2021-12-13
公開日2022-10-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Peptides derived from hookworm anti-inflammatory proteins suppress inducible colitis in mice and inflammatory cytokine production by human cells.
Front Med (Lausanne), 9, 2022
7RN3
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BU of 7rn3 by Molmil
hyen D solution structure
分子名称: Cyclotide hyen-D
著者Du, Q, Huang, Y.H, Craik, D.J, Wang, C.K.
登録日2021-07-29
公開日2022-03-02
最終更新日2022-12-07
実験手法SOLUTION NMR
主引用文献Mutagenesis of bracelet cyclotide hyen D reveals functionally and structurally critical residues for membrane binding and cytotoxicity.
J.Biol.Chem., 298, 2022
7R0R
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BU of 7r0r by Molmil
Solution structure of the designed Armadillo repeat protein N(A4)M4C(AII) refined by pseudocontact shifts
分子名称: Designed Armadillo Repeat Protein N(A4)M4C(AII)
著者Cucuzza, S, Zerbe, O.
登録日2022-02-02
公開日2022-06-22
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Improved Repeat Protein Stability by Combined Consensus and Computational Protein Design.
Biochemistry, 62, 2023
7TOD
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BU of 7tod by Molmil
Solution structure of the phosphatidylinositol 3-phosphate binding domain from the Legionella effector SetA
分子名称: Subversion of eukaryotic traffic protein A
著者Beck, W.H.J, Enoki, T.A, Feigenson, G.W, Nicholson, L, Oswald, R, Mao, Y.
登録日2022-01-24
公開日2023-02-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the phosphatidylinositol 3-phosphate binding domain from the Legionella effector SetA
To Be Published
7TZ3
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Iturin from Bacillus subtilis ATCC 19659
分子名称: Iturin lipopeptide
著者Silva, B.M, de Magalhaes, M.T.Q, Rodrigues, J.T.
登録日2022-02-15
公開日2023-03-01
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献Iturin from Bacillus subtilis ATCC 19659
To Be Published
7T1N
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Solution structure of 7SK stem-loop 1 with HEXIM Arginine Rich Motif
分子名称: HEXIM Arginine Rich Motif, RNA (56-MER)
著者Pham, V.V, Gao, M, D'Souza, V.M.
登録日2021-12-02
公開日2022-09-14
最終更新日2024-05-15
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.
Commun Biol, 5, 2022
7T1O
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BU of 7t1o by Molmil
Solution structure of 7SK stem-loop 1 with HIV-1 Tat Subtype G Arginine Rich Motif
分子名称: 7SK stem-loop 1 RNA (56-MER), Tat Subtype G Arginine Rich Motif
著者Pham, V.V, Gao, M, D'Souza, V.M.
登録日2021-12-02
公開日2022-09-14
最終更新日2024-05-15
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.
Commun Biol, 5, 2022
3AME
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BU of 3ame by Molmil
TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 Q9TQ44T
分子名称: PROTEIN (ANTIFREEZE PROTEIN TYPE III)
著者Graether, S.P, Deluca, C.I, Baardsnes, J, Hill, G.A, Davies, P.L, Jia, Z.
登録日1999-01-24
公開日1999-04-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Quantitative and qualitative analysis of type III antifreeze protein structure and function.
J.Biol.Chem., 274, 1999
3AIH
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BU of 3aih by Molmil
Human OS-9 MRH domain complexed with alpha3,alpha6-Man5
分子名称: Protein OS-9, alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose
著者Satoh, T, Chen, Y, Hu, D, Hanashima, S, Yamamoto, K, Yamaguchi, Y.
登録日2010-05-14
公開日2010-12-22
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis for Oligosaccharide Recognition of Misfolded Glycoproteins by OS-9 in ER-Associated Degradation
Mol.Cell, 40, 2010
3CS9
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Human ABL kinase in complex with nilotinib
分子名称: Nilotinib, Proto-oncogene tyrosine-protein kinase ABL1
著者Cowan-Jacob, S.W, Fendrich, G, Manley, P, Liebetanz, J, Fabbro, D.
登録日2008-04-09
公開日2008-04-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Characterization of AMN107, a selective inhibitor of native and mutant Bcr-Abl
Cancer Cell, 7, 2005

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