PDB: 809 件ウェブページステータス検索Chemie searchBIRD

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6O1D	Cryo-EM structure of the centromeric nucleosome with native alpha satellite DNA 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Zhou, B.-R. 登録日 2019-02-19 公開日 2019-05-22 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.395 Å) 主引用文献 Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
6O22	Structure of Asf1-H3:H4-Rtt109-Vps75 histone chaperone-lysine acetyltransferase complex with the histone substrate. 分子名称: Histone H3.2, Histone H4, Histone acetyltransferase RTT109, ... 著者 Danilenko, N, Carlomagno, T, Kirkpatrick, J.P. 登録日 2019-02-22 公開日 2019-07-31 最終更新日 2024-05-01 実験手法 SOLUTION NMR, SOLUTION SCATTERING 主引用文献 Histone chaperone exploits intrinsic disorder to switch acetylation specificity. Nat Commun, 10, 2019
1M18	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA 分子名称: Histone H2A.1, Histone H2B.1, Histone H3.2, ... 著者 Suto, R.K, Edayathumangalam, R.S, White, C.L, Melander, C, Gottesfeld, J.M, Dervan, P.B, Luger, K. 登録日 2002-06-18 公開日 2003-02-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands J.Mol.Biol., 326, 2003
1M19	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA 分子名称: 3-AMINO-(DIMETHYLPROPYLAMINE), 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID, 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID, ... 著者 Suto, R.K, Edayathumangalam, R.S, White, C.L, Melander, C, Gottesfeld, J.M, Dervan, P.B, Luger, K. 登録日 2002-06-18 公開日 2003-02-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands J.Mol.Biol., 326, 2003
1KX3	X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution 分子名称: DNA (5'(ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT)3'), MANGANESE (II) ION, histone H2A.1, ... 著者 Davey, C.A, Sargent, D.F, Luger, K, Maeder, A.W, Richmond, T.J. 登録日 2002-01-31 公開日 2002-12-25 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution J.Mol.Biol., 319, 2002
1KX5	X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution 分子名称: CHLORIDE ION, DNA (5'(ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT)3'), DNA (5'(ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGATTCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT)3'), ... 著者 Davey, C.A, Sargent, D.F, Luger, K, Maeder, A.W, Richmond, T.J. 登録日 2002-01-31 公開日 2002-12-25 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution J.Mol.Biol., 319, 2002
1KX4	X-Ray Structure of the Nucleosome Core Particle, NCP146b, at 2.6 A Resolution 分子名称: CHLORIDE ION, DNA (5'(ATCTCCAAATATCCCTTGCGGATCGTAGAAAAAGTGTGTCAAACTGCGCTATCAAAGGGAAACTTCAACTGAATTCAGTTGAAGTTTCCCTTTGATAGCGCAGTTTGACACACTTTTTCTACGATCCGCAAGGGATATTTGGAGAT)3'), MANGANESE (II) ION, ... 著者 Davey, C.A, Sargent, D.F, Luger, K, Maeder, A.W, Richmond, T.J. 登録日 2002-01-31 公開日 2002-12-25 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 A Resolution J.Mol.Biol., 319, 2002
1N1J	Crystal structure of the NF-YB/NF-YC histone pair 分子名称: NF-YB, NF-YC 著者 Romier, C, Cocchiarella, F, Mantovani, R, Moras, D. 登録日 2002-10-18 公開日 2003-02-18 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y J.Biol.Chem., 278, 2003
1M1A	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA 分子名称: 3-AMINO-(DIMETHYLPROPYLAMINE), 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID, 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID, ... 著者 Suto, R.K, Edayathumangalam, R.S, White, C.L, Melander, C, Gottesfeld, J.M, Dervan, P.B, Luger, K. 登録日 2002-06-18 公開日 2003-02-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands J.MOL.BIOL., 326, 2003
3MGS	Binding of Cesium ions to the Nucleosome Core particle 分子名称: CESIUM ION, CHLORIDE ION, DNA (147-MER), ... 著者 Mohideen, K, Muhammad, R, Davey, C.A. 登録日 2010-04-07 公開日 2010-06-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 2010
3NQU	Crystal structure of partially trypsinized (CENP-A/H4)2 heterotetramer 分子名称: Histone H3-like centromeric protein A, Histone H4, SULFATE ION 著者 Sekulic, N, Black, B.E. 登録日 2010-06-29 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
3MGQ	Binding of Nickel ions to the Nucleosome Core Particle 分子名称: CHLORIDE ION, DNA (147-MER), Histone H2A, ... 著者 Mohideen, K, Muhammad, R, Davey, C.A. 登録日 2010-04-07 公開日 2010-06-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MVD	Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Makde, R.D, England, J.R, Yennawar, H.P, Tan, S. 登録日 2010-05-04 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature, 467, 2010
3MNN	A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core 分子名称: 1,3,5-triaza-7-phosphatricyclo[3.3.1.1~3,7~]decane, 1-methyl-4-(1-methylethyl)benzene, DNA (145-MER), ... 著者 Ong, M.S, Davey, C.A. 登録日 2010-04-22 公開日 2011-04-06 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A ruthenium antimetastasis agent forms specific histone protein adducts in the nucleosome core Chemistry, 17, 2011
3MGP	Binding of Cobalt ions to the Nucleosome Core Particle 分子名称: CHLORIDE ION, COBALT (II) ION, DNA (147-MER), ... 著者 Mohideen, K, Muhammad, R, Davey, C.A. 登録日 2010-04-07 公開日 2010-06-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.44 Å) 主引用文献 Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3NQJ	Crystal structure of (CENP-A/H4)2 heterotetramer 分子名称: Histone H3-like centromeric protein A, Histone H4, PHOSPHATE ION 著者 Sekulic, N, Black, B.E. 登録日 2010-06-29 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
3O62	Nucleosome core particle modified with a cisplatin 1,3-cis-{Pt(NH3)2}2+-d(GpTpG) intrastrand cross-link 分子名称: Cisplatin, DNA (146-MER), Histone H2A type 1, ... 著者 Lippard, S.J, Todd, R.C. 登録日 2010-07-28 公開日 2011-01-05 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.216 Å) 主引用文献 Consequences of Cisplatin binding on nucleosome structure and dynamics. Chem.Biol., 17, 2010
8B0A	Cryo-EM structure of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome 分子名称: Chromodomain-helicase-DNA-binding protein 1-like, DNA (149-MER) Widom 601 sequence, Histone H2A type 1, ... 著者 Bacic, L, Gaullier, G, Deindl, S. 登録日 2022-09-07 公開日 2023-09-20 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Asymmetric nucleosome PARylation at DNA breaks mediates directional nucleosome sliding by ALC1. Nat Commun, 15, 2024
8CEO	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Wang, H, Cramer, P. 登録日 2023-02-02 公開日 2023-03-08 最終更新日 2023-04-19 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
8BZ1	RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Abril-Garrido, J, Dienemann, C, Grabbe, F, Velychko, T, Lidschreiber, M, Wang, H, Cramer, P. 登録日 2022-12-14 公開日 2023-05-03 最終更新日 2023-06-14 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of transcription reduction by a promoter-proximal +1 nucleosome. Mol.Cell, 83, 2023
8COM	Structure of the Nucleosome Core Particle from Trypanosoma brucei 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Burdett, H, Deak, G, Wilson, M.D. 登録日 2023-02-28 公開日 2023-07-12 最終更新日 2023-09-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Histone divergence in trypanosomes results in unique alterations to nucleosome structure. Nucleic Acids Res., 51, 2023
8CBQ	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Novacek, J, Veverka, V. 登録日 2023-01-25 公開日 2023-09-06 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8CBN	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Koutna, E, Kouba, T, Novacek, J, Veverka, V. 登録日 2023-01-25 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8DK5	Structure of 187bp LIN28b nucleosome with site 0 mutation 分子名称: DNA (187-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... 著者 Lian, T, Guan, R, Bai, Y. 登録日 2022-07-02 公開日 2023-06-28 実験手法 ELECTRON MICROSCOPY (2.71 Å) 主引用文献 Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
6O96	Dot1L bound to the H2BK120 Ubiquitinated nucleosome 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Vasilyev, N, Chen, R, Nudler, E, Armache, J.-P, Armache, K.-J. 登録日 2019-03-13 公開日 2019-04-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination. Mol.Cell, 74, 2019

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