PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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3NWC	Crystal Structure of the Pyrococcus furiosus SMC Protein Hinge Domain 分子名称: SMC protein 著者 Griese, J.J, Hopfner, K.P. 登録日 2010-07-09 公開日 2010-10-20 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.6961 Å) 主引用文献 Structure and DNA-binding activity of the Pyrococcus furiosus SMC protein hinge domain Proteins, 79, 2011
9G7H	Human Sirt6 in complex with ADP-ribose and the inhibitor 2-Pr 分子名称: 2,4-bis(oxidanylidene)-1-[2-oxidanylidene-2-[[(2S)-3-oxidanylidene-3-(propylamino)-2-[3-(3-pyridin-3-yl-1,2,4-oxadiazol-5-yl)propanoylamino]propyl]amino]ethyl]pyrimidine-5-carboxamide, NAD-dependent protein deacetylase sirtuin-6, SULFATE ION, ... 著者 You, W, Steegborn, C. 登録日 2024-07-21 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Elucidating the Unconventional Binding Mode of a DNA-Encoded Library Hit Provides a Blueprint for Sirtuin 6 Inhibitor Development. Chemmedchem, 2024
5LW0	Oryza sativa APL macrodomain in complex with ADP-ribose 分子名称: Basic helix-loop-helix, putative, expressed, ... 著者 Ariza, A. 登録日 2016-09-14 公開日 2016-10-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 The role of ADP-ribosylation in regulating DNA interstrand crosslink repair. J.Cell.Sci., 129, 2016
5MWO	Structure of Mycobacterium Tuberculosis Transcriptional Regulatory Repressor Protein (EthR) in complex with fragment 7E8. 分子名称: (5-methyl-1-benzothiophen-2-yl)methanol, 1,2-ETHANEDIOL, HTH-type transcriptional regulator EthR 著者 Mendes, V, Chan, D.S.-H, Thomas, S.E, McConnell, B, Matak-Vinkovic, D, Coyne, A.G, Abell, C, Blundell, T.L. 登録日 2017-01-18 公開日 2017-05-31 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.962 Å) 主引用文献 Fragment Screening against the EthR-DNA Interaction by Native Mass Spectrometry. Angew. Chem. Int. Ed. Engl., 56, 2017
5MXK	Structure of Mycobacterium Tuberculosis Transcriptional Regulatory Repressor Protein (EthR) in complex with fragment 7G9. 分子名称: 1,2-ETHANEDIOL, HTH-type transcriptional regulator EthR, ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide 著者 Mendes, V, Chan, D.S.-H, Thomas, S.E, McConnell, B, Matak-Vinkovic, D, Coyne, A.G, Abell, C, Blundell, T.L. 登録日 2017-01-23 公開日 2017-05-31 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.932 Å) 主引用文献 Fragment Screening against the EthR-DNA Interaction by Native Mass Spectrometry. Angew. Chem. Int. Ed. Engl., 56, 2017
6OIT	CryoEM structure of Arabidopsis DDR' complex (DRD1 peptide-DMS3-RDM1) 分子名称: Protein CHROMATIN REMODELING 35, Protein DEFECTIVE IN MERISTEM SILENCING 3, Protein RDM1 著者 Wongpalee, S.P, Liu, S, Zhou, Z.H, Jacobsen, S.E. 登録日 2019-04-09 公開日 2019-07-24 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun, 10, 2019
4MTE	Zinc Uptake Regulator Complexed with Zinc and DNA 分子名称: ZINC ION, Zinc uptake regulation protein, znuABC operator DNA 著者 Gilston, B.A, Mondragon, A, O'Halloran, T.V. 登録日 2013-09-19 公開日 2014-11-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon. Plos Biol., 12, 2014
4MTD	Zinc Uptake Regulator Complexed With Zinc AND DNA 分子名称: ZINC ION, Zinc uptake regulation protein, znuABC operator DNA 著者 Gilston, B.A, Mondragon, A, O'Halloran, T.V. 登録日 2013-09-19 公開日 2014-11-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural and Mechanistic Basis of Zinc Regulation Across the E. coli Zur Regulon. Plos Biol., 12, 2014
6OIS	CryoEM structure of Arabidopsis DR complex (DMS3-RDM1) 分子名称: Protein DEFECTIVE IN MERISTEM SILENCING 3, Protein RDM1 著者 Wongpalee, S.P, Liu, S, Zhou, Z.H, Jacobsen, S.E. 登録日 2019-04-09 公開日 2019-07-24 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun, 10, 2019
6P7E	Structure of T7 DNA Polymerase Bound to a Primer/Template DNA and a Peptide that Mimics the C-terminal Tail of the Primase-Helicase 分子名称: ASP-THR-ASP-PHE peptide, DNA (25-MER), DNA (5'-D(P*GP*GP*CP*AP*GP*GP*TP*GP*GP*TP*CP*TP*TP*GP*CP*CP*GP*GP*TP*GP*A)-3'), ... 著者 Foster, B.M, Rosenberg, D, Salvo, H, Stephens, K.L, Bintz, B.J, Hammel, M, Ellenberger, T, Gainey, M.D, Wallen, J.R. 登録日 2019-06-05 公開日 2020-03-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.001 Å) 主引用文献 Combined Solution and Crystal Methods Reveal the Electrostatic Tethers That Provide a Flexible Platform for Replication Activities in the Bacteriophage T7 Replisome. Biochemistry, 58, 2019
3MZH	Crystal structure of cAMP receptor protein from mycobacterium tuberculosis in complex with cAMP and its DNA binding element 分子名称: 5'-D(P*AP*AP*AP*TP*GP*TP*GP*AP*TP*CP*TP*AP*GP*GP*TP*CP*AP*CP*GP*TP*G)-3', 5'-D(P*CP*AP*CP*GP*TP*GP*AP*CP*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*C)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Akhter, Y, Wilmanns, M. 登録日 2010-05-12 公開日 2011-06-08 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal Structure of Camp Receptor Protein from Mycobacterium Tuberculosis in Complex with DNA and cAMP To be Published
8P62	S. cerevisiae ssDNA-sCMGE after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-25 公開日 2024-05-29 最終更新日 2024-08-28 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 31, 2024
3T7K	Complex structure of Rtt107p and phosphorylated histone H2A 分子名称: Histone H2A.1, Regulator of Ty1 transposition protein 107 著者 Li, X, Li, F, Wu, J, Shi, Y. 登録日 2011-07-30 公開日 2012-02-15 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.028 Å) 主引用文献 Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair J.Biol.Chem., 287, 2012
3CG7	Crystal structure of cell-death related nuclease 4 (CRN-4) 分子名称: Cell death-related nuclease 4, ZINC ION 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2008-03-05 公開日 2008-12-30 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
1OUZ	Crystal structure of a mutant IHF (BetaE44A) complexed with a variant H' Site (T44A) 分子名称: 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3', Integration Host Factor Alpha-subunit, ... 著者 Lynch, T.W, Read, E.K, Mattis, A.N, Gardner, J.F, Rice, P.A. 登録日 2003-03-25 公開日 2003-07-15 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.41 Å) 主引用文献 Integration Host Factor: putting a twist on protein-DNA recognition J.Mol.Biol., 330, 2003
1OWF	Crystal structure of a mutant IHF (BetaE44A) complexed with the native H' Site 分子名称: 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3', Integration Host Factor Alpha-subunit, ... 著者 Lynch, T.W, Read, E.K, Mattis, A.N, Gardner, J.F, Rice, P.A. 登録日 2003-03-28 公開日 2003-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Integration Host Factor: putting a twist on protein-DNA recognition J.Mol.Biol., 330, 2003
1OWG	Crystal structure of WT IHF complexed with an altered H' site (T44A) 分子名称: 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3', Integration Host Factor Alpha-subunit, ... 著者 Lynch, T.W, Read, E.K, Mattis, A.N, Gardner, J.F, Rice, P.A. 登録日 2003-03-28 公開日 2003-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Integration Host Factor: putting a twist on protein-DNA recognition J.Mol.Biol., 330, 2003
1GU4	Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment 分子名称: 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA 著者 Tahirov, T.H, Ogata, K. 登録日 2002-01-23 公開日 2003-06-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1GU5	Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter 分子名称: 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', CAAT/ENHANCER BINDING PROTEIN BETA 著者 Tahirov, T.H, Ogata, K. 登録日 2002-01-24 公開日 2003-06-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1GTW	crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter 分子名称: 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA 著者 Tahirov, T.H, Ogata, K. 登録日 2002-01-22 公開日 2004-02-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
8U61	Human RADX tetramer bound to ssDNA 分子名称: RPA-related protein RADX, dT25 DNA (25-MER) 著者 Balakrishnan, S, Chazin, W.J. 登録日 2023-09-13 公開日 2024-01-31 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structure of RADX and mechanism for regulation of RAD51 nucleofilaments. Proc.Natl.Acad.Sci.USA, 121, 2024
4X18	[Ru(TAP)2(dppz-11-Me)]2+ bound to d(TCGGCGCCGA) 分子名称: (11-methyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium, BARIUM ION, CHLORIDE ION, ... 著者 Hall, J.P, Cardin, C.J. 登録日 2014-11-24 公開日 2015-05-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru-dppz Complexes to DNA Organometallics, 2015
4X1A	Lambda-[Ru(TAP)2(dppz-10,12-Me)]2+ bound to d(TCGGCGCCGA) 分子名称: (10,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium, BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') 著者 Hall, J.P, Cardin, C.J. 登録日 2014-11-24 公開日 2015-05-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (0.89 Å) 主引用文献 The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru-dppz Complexes to DNA Organometallics, 2015
3MKL	Crystal structure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 分子名称: HTH-type transcriptional regulator gadX 著者 Chang, C, Mack, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2010-04-15 公開日 2010-04-28 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of DNA-binding transcriptional dual regulator from Escherichia coli K-12 To be Published
8P63	S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-25 公開日 2024-05-29 最終更新日 2024-08-28 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 31, 2024

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