Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YPO
DownloadVisualize
BU of 7ypo by Molmil
Cryo-EM structure of baculovirus LEF-3 in complex with ssDNA
分子名称: DNA (28-MER), Lef3
著者Yin, J, Fu, Y, Rao, G, Li, Z, Cao, S.
登録日2022-08-04
公開日2023-01-25
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural transitions during the cooperative assembly of baculovirus single-stranded DNA-binding protein on ssDNA.
Nucleic Acids Res., 50, 2022
7YPQ
DownloadVisualize
BU of 7ypq by Molmil
Cryo-EM structure of one baculovirus LEF-3 molecule in complex with ssDNA
分子名称: DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Lef3
著者Fu, Y, Rao, G, Yin, J, Li, Z, Cao, S.
登録日2022-08-04
公開日2023-01-25
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural transitions during the cooperative assembly of baculovirus single-stranded DNA-binding protein on ssDNA.
Nucleic Acids Res., 50, 2022
7Z9G
DownloadVisualize
BU of 7z9g by Molmil
E.coli gyrase holocomplex with 217 bp DNA and Albi-2
分子名称: 4-[[3-(2-azanylethoxy)-2-oxidanyl-4-[[5-[[(2~{S})-2-[[4-[(6-oxidanylnaphthalen-2-yl)carbonylamino]phenyl]carbonylamino]-3-(1~{H}-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]phenyl]carbonylamino]-3-methoxy-2-oxidanyl-benzoic acid, DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), ...
著者Ghilarov, D, Heddle, J.G.H.
登録日2022-03-21
公開日2023-02-15
最終更新日2023-07-19
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
7Z9M
DownloadVisualize
BU of 7z9m by Molmil
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site AA)
分子名称: 4-[[4-[[5-[[(2S)-2-[[5-[(4-cyanophenyl)carbonylamino]pyridin-2-yl]carbonylamino]-3-(1H-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]-2-oxidanyl-3-propan-2-yloxy-phenyl]carbonylamino]benzoic acid, DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), ...
著者Ghilarov, D, Heddle, J.G.H.
登録日2022-03-21
公開日2023-02-15
最終更新日2023-07-19
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
8EHO
DownloadVisualize
BU of 8eho by Molmil
PRRSV-1 PLP2 domain bound to ubiquitin
分子名称: 3-AMINOPROPANE, GLYCEROL, NITRATE ION, ...
著者Bailey-Elkin, B.A, Mark, B.L.
登録日2022-09-14
公開日2023-12-06
最終更新日2024-01-03
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Demonstrating the importance of porcine reproductive and respiratory syndrome virus papain-like protease 2 deubiquitinating activity in viral replication by structure-guided mutagenesis.
Plos Pathog., 19, 2023
8F73
DownloadVisualize
BU of 8f73 by Molmil
Crystal structure of Pseudomonas aeruginosa UDP-glucose phosphorylase in complex with UDP-glucose
分子名称: 1,2-ETHANEDIOL, ACETATE ION, MAGNESIUM ION, ...
著者Dirr, L, Fuehring, J.
登録日2022-11-17
公開日2023-11-29
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Tetramerization is essential for the enzymatic function of the Pseudomonas aeruginosa virulence factor UDP-glucose pyrophosphorylase.
Mbio, 15, 2024
5INP
DownloadVisualize
BU of 5inp by Molmil
Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mn2+ complex
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), MANGANESE (II) ION, ...
著者Schellenberg, M.J, Williams, R.S.
登録日2016-03-07
公開日2016-04-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.947 Å)
主引用文献Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res., 44, 2016
7Z9C
DownloadVisualize
BU of 7z9c by Molmil
E.coli gyrase holocomplex with 217 bp DNA and albicidin
分子名称: DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), DNA (5'-D(P*AP*AP*AP*TP*CP*TP*GP*TP*GP*CP*GP*GP*GP*T)-3'), ...
著者Ghilarov, D, Heddle, J.G.H, Suessmuth, R.
登録日2022-03-21
公開日2023-02-15
最終更新日2023-07-19
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
8EHN
DownloadVisualize
BU of 8ehn by Molmil
PRRSV-1 PLP2 domain
分子名称: ACETATE ION, Papain-like protease 2, ZINC ION
著者Bailey-Elkin, B.A, Mark, B.L.
登録日2022-09-14
公開日2023-12-06
最終更新日2024-01-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Demonstrating the importance of porcine reproductive and respiratory syndrome virus papain-like protease 2 deubiquitinating activity in viral replication by structure-guided mutagenesis.
Plos Pathog., 19, 2023
7DD5
DownloadVisualize
BU of 7dd5 by Molmil
Structure of Calcium-Sensing Receptor in complex with NPS-2143
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile, ...
著者Wen, T.L, Yang, X, Shen, Y.Q.
登録日2020-10-27
公開日2021-06-16
最終更新日2021-06-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis for activation and allosteric modulation of full-length calcium-sensing receptor.
Sci Adv, 7, 2021
6XN8
DownloadVisualize
BU of 6xn8 by Molmil
Crystal Structure of 2-hydroxyacyl CoA lyase (HACL) from Rhodospirillales bacterium URHD0017
分子名称: 2-hydroxyacyl-CoA lyase 1, 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
著者Miller, M.D, Xu, W, Olmos Jr, J.L, Chou, A, Clomburg, J.M, Gonzalez, R, Philips Jr, G.N.
登録日2020-07-02
公開日2021-07-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structure of 2-hydroxyacyl CoA lyase (HACL) from Rhodospirillales bacterium URHD0017
To Be Published
5LOZ
DownloadVisualize
BU of 5loz by Molmil
STRUCTURE OF YEAST ENT1 ENTH DOMAIN
分子名称: Epsin-1
著者Tanner, N, Prag, G.
登録日2016-08-11
公開日2016-10-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A bacterial genetic selection system for ubiquitylation cascade discovery.
Nat.Methods, 13, 2016
7DD6
DownloadVisualize
BU of 7dd6 by Molmil
Structure of Ca2+/L-Trp-bonnd Calcium-Sensing Receptor in active state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Wen, T.L, Yang, X, Shen, Y.Q.
登録日2020-10-27
公開日2021-06-16
最終更新日2021-06-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis for activation and allosteric modulation of full-length calcium-sensing receptor.
Sci Adv, 7, 2021
7DD7
DownloadVisualize
BU of 7dd7 by Molmil
Structure of Calcium-Sensing Receptor in complex with Evocalcet
分子名称: 2-[4-[(3S)-3-[[(1R)-1-naphthalen-1-ylethyl]amino]pyrrolidin-1-yl]phenyl]ethanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wen, T.L, Yang, X, Shen, Y.Q.
登録日2020-10-27
公開日2021-06-16
最終更新日2021-06-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural basis for activation and allosteric modulation of full-length calcium-sensing receptor.
Sci Adv, 7, 2021
6RZB
DownloadVisualize
BU of 6rzb by Molmil
Cryo-EM structure of mouse cytoplasmic dynein-1 microtubule binding domain bound to microtubules
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Lacey, S.E, He, S, Scheres, S.H.W, Carter, A.P.
登録日2019-06-13
公開日2019-07-10
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM of dynein microtubule-binding domains shows how an axonemal dynein distorts the microtubule.
Elife, 8, 2019
7Z9K
DownloadVisualize
BU of 7z9k by Molmil
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site TG)
分子名称: 4-[[4-[[5-[[(2S)-2-[[5-[(4-cyanophenyl)carbonylamino]pyridin-2-yl]carbonylamino]-3-(1H-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]-2-oxidanyl-3-propan-2-yloxy-phenyl]carbonylamino]benzoic acid, DNA (5'-D(*AP*AP*TP*CP*AP*CP*CP*CP*GP*CP*AP*CP*AP*GP*AP*TP*TP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*TP*TP*AP*TP*GP*CP*CP*TP*GP*AP*TP*TP*CP*T)-3'), ...
著者Ghilarov, D, Heddle, J.G.H.
登録日2022-03-21
公開日2023-03-08
最終更新日2023-07-19
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Molecular mechanism of topoisomerase poisoning by the peptide antibiotic albicidin.
Nat Catal, 6, 2023
6A5I
DownloadVisualize
BU of 6a5i by Molmil
Pseudocerastes Persicus Trypsin Inhibitor
分子名称: Trypsin Inhibitor
著者Amininasab, M.
登録日2018-06-23
公開日2019-05-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural characterization of PPTI, a kunitz-type protein from the venom of Pseudocerastes persicus.
PLoS ONE, 14, 2019
7WEF
DownloadVisualize
BU of 7wef by Molmil
SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv289
分子名称: Spike protein S1, The heavy chain of Fab XGv289, The light chain of Fab XGv289
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
7WE9
DownloadVisualize
BU of 7we9 by Molmil
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv289
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Wang, X, Wang, L.
登録日2021-12-23
公開日2022-05-04
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.
Nature, 603, 2022
3NQU
DownloadVisualize
BU of 3nqu by Molmil
Crystal structure of partially trypsinized (CENP-A/H4)2 heterotetramer
分子名称: Histone H3-like centromeric protein A, Histone H4, SULFATE ION
著者Sekulic, N, Black, B.E.
登録日2010-06-29
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres.
Nature, 467, 2010
5XXS
DownloadVisualize
BU of 5xxs by Molmil
Crystal structure of native ribT from Bacillus subtilis
分子名称: COENZYME A, GLYCEROL, Protein RibT, ...
著者Srivastava, R, Karthikeyan, S.
登録日2017-07-04
公開日2018-01-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structural characterization of ribT from Bacillus subtilis reveals it as a GCN5-related N-acetyltransferase.
J. Struct. Biol., 202, 2018
7WBJ
DownloadVisualize
BU of 7wbj by Molmil
Cryo-EM structure of N-terminal modified human vasoactive intestinal polypeptide receptor 2 (VIP2R) in complex with PACAP27 and Gs
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Xu, Y.N, Feng, W.B, Zhou, Q.T, Liang, A.Y, Li, J, Dai, A.T, Zhao, F.H, Yan, J.H, Chen, C.W, Li, H, Zhao, L.H, Xia, T, Jiang, Y, Xu, H.E, Yang, D.H, Wang, M.W.
登録日2021-12-16
公開日2022-05-18
実験手法ELECTRON MICROSCOPY (3.42 Å)
主引用文献A distinctive ligand recognition mechanism by the human vasoactive intestinal polypeptide receptor 2.
Nat Commun, 13, 2022
5IBS
DownloadVisualize
BU of 5ibs by Molmil
Structure of E76Q, a Cancer-Associated Mutation of the Oncogenic Phosphatase SHP2
分子名称: Tyrosine-protein phosphatase non-receptor type 11
著者Blacklow, S.C, Stams, T, Fodor, M, LaRochelle, J.R.
登録日2016-02-22
公開日2016-04-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structural and Functional Consequences of Three Cancer-Associated Mutations of the Oncogenic Phosphatase SHP2.
Biochemistry, 55, 2016
7WPP
DownloadVisualize
BU of 7wpp by Molmil
Cryo-EM structure of VWF D'D3 dimer complexed with D1D2 at 2.85 angstron resolution (1 unit)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, von Willebrand antigen 2, ...
著者Zeng, J.W, Shu, Z.M, Zhou, A.W.
登録日2022-01-24
公開日2022-05-25
最終更新日2022-06-15
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Structural basis of von Willebrand factor multimerization and tubular storage.
Blood, 139, 2022
5II4
DownloadVisualize
BU of 5ii4 by Molmil
Crystal structure of red abalone VERL repeat 1 with linker at 2.0 A resolution
分子名称: Maltose-binding periplasmic protein,Vitelline envelope sperm lysin receptor, TRIETHYLENE GLYCOL, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Sadat Al-Hosseini, H, Raj, I, Nishimura, K, Jovine, L.
登録日2016-03-01
公開日2017-06-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis of Egg Coat-Sperm Recognition at Fertilization.
Cell, 169, 2017

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon