PDB: 2041 件ウェブページステータス検索Chemie searchBIRD

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1UIS	The 2.0 crystal structure of eqFP611, a far-red fluorescent protein from the sea anemone Entacmaea quadricolor 分子名称: ACETIC ACID, CALCIUM ION, red fluorescent protein FP611 著者 Petersen, J, Wilmann, P.G, Beddoe, T, Oakley, A.J, Devenish, R.J, Prescott, M, Rossjohn, J. 登録日 2003-07-21 公開日 2003-10-21 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The 2.0A crystal structure of eqFP611, a far-red fluorescent protein from the sea anemone Entacmaea quadricolor J.Biol.Chem., 278, 2003
6B9C	Superfolder Green Fluorescent Protein with 4-nitro-L-phenylalanine at the chromophore (position 66) 分子名称: CARBON DIOXIDE, Green fluorescent protein 著者 Phillips-Piro, C.M, Brewer, S.H, Olenginski, G.M, Piacentini, J. 登録日 2017-10-10 公開日 2018-10-17 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.695 Å) 主引用文献 Structural and spectrophotometric investigation of two unnatural amino-acid altered chromophores in the superfolder green fluorescent protein Acta Crystallogr.,Sect.D, 2021
6OA8	Superfolder Green Fluorescent Protein with 4-cyano-L-phenylalanine at the chromophore (position 66) 分子名称: 1,2-ETHANEDIOL, Green fluorescent protein, SODIUM ION, ... 著者 Piacentini, J, Olenginski, G.M, Brewer, S.H, Phillips-Piro, C.M. 登録日 2019-03-15 公開日 2020-08-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.37 Å) 主引用文献 Structural and spectrophotometric investigation of two unnatural amino-acid altered chromophores in the superfolder green fluorescent protein Acta Crystallogr.,Sect.D, 2021
5K9D	Crystal structure of human dihydroorotate dehydrogenase at 1.7 A resolution 分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, ACETATE ION, CHLORIDE ION, ... 著者 Lewis, T.A, Sykes, D.B, Law, J.M, Munoz, B, Scadden, D.T, Rustiguel, J.K, Nonato, M.C, Schreiber, S.L. 登録日 2016-05-31 公開日 2016-10-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Development of ML390: A Human DHODH Inhibitor That Induces Differentiation in Acute Myeloid Leukemia. ACS Med Chem Lett, 7, 2016
5K9C	Crystal structure of human dihydroorotate dehydrogenase with ML390 分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, ACETATE ION, CHLORIDE ION, ... 著者 Lewis, T.A, Sykes, D.B, Law, J.M, Munoz, B, Scadden, D.T, Rustiguel, J.K, Nonato, M.C, Schreiber, S.L. 登録日 2016-05-31 公開日 2016-10-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Development of ML390: A Human DHODH Inhibitor That Induces Differentiation in Acute Myeloid Leukemia. ACS Med Chem Lett, 7, 2016
4FL6	Crystal structure of the complex of the 3-MBT repeat domain of L3MBTL3 and UNC1215 分子名称: Lethal(3)malignant brain tumor-like protein 3, UNKNOWN ATOM OR ION, [2-(phenylamino)benzene-1,4-diyl]bis{[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone} 著者 Zhong, N, Tempel, W, Ravichandran, M, Dong, A, Ingerman, L.A, Graslund, S, Frye, S.V, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC) 登録日 2012-06-14 公開日 2012-06-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Discovery of a chemical probe for the L3MBTL3 methyllysine reader domain. Nat. Chem. Biol., 9, 2013
3P19	Improved NADPH-dependent Blue Fluorescent Protein 分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Putative blue fluorescent protein 著者 Kao, T.H, Chen, Y, Pai, C.H, Wang, A.H.J. 登録日 2010-09-30 公開日 2011-07-20 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of a NADPH-dependent blue fluorescent protein revealed the unique role of Gly176 on the fluorescence enhancement. J.Struct.Biol., 174, 2011
7Z7P	Structure of the fluorescent protein NeonCyan0.95 at pH 5.6 分子名称: NeonCyan0.95, SULFATE ION 著者 Depernet, H, Dupuy, J, Royant, A. 登録日 2022-03-16 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
7Z7O	Structure of the fluorescent protein NeonCyan0.95 at pH 7.5 分子名称: NeonCyan0.95 著者 Clavel, D, Dupuy, J, Royant, A. 登録日 2022-03-16 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
7Z7Q	Structure of the T207D single-point mutant of the fluorescent protein NeonCyan1 at pH 6.5 分子名称: NeonCyan1 著者 Duarte, K, Dupuy, J, Royant, A. 登録日 2022-03-16 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
5G5Y	S.pneumoniae ABC-transporter substrate binding protein FusA apo structure 分子名称: ABC TRANSPORTER, SUBSTRATE-BINDING PROTEIN, CALCIUM ION, ... 著者 Culurgioni, S, Harris, G, Singh, A.K, King, S.J, Walsh, M.A. 登録日 2016-06-10 公開日 2017-01-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Structural Basis for Regulation and Specificity of Fructooligosaccharide Import in Streptococcus pneumoniae. Structure, 25, 2017
6MGH	X-ray structure of monomeric near-infrared fluorescent protein miRFP670nano 分子名称: 3-[2-[(~{Z})-[5-[(~{Z})-[(3~{S},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, GLYCEROL, ISOPROPYL ALCOHOL, ... 著者 Pletnev, S. 登録日 2018-09-13 公開日 2018-12-19 最終更新日 2019-01-30 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing. Nat Commun, 10, 2019
7QLO	rsKiiro pump dump probe structure by TR-SFX 分子名称: rsKiiro 著者 van Thor, J.J. 登録日 2021-12-20 公開日 2023-10-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.31 Å) 主引用文献 Optical control of ultrafast structural dynamics in a fluorescent protein. Nat.Chem., 15, 2023
4U5T	Crystal Structure of VBP Leucine Zipper with Bound Arylstibonic Acid 分子名称: (2Z)-3-{3-[dihydroxy(oxido)-lambda~5~-stibanyl]phenyl}prop-2-enoic acid, VBP leucine zipper 著者 Stagno, J.R, Ji, X. 登録日 2014-07-25 公開日 2014-08-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.301 Å) 主引用文献 P6981, an arylstibonic acid, is a novel low nanomolar inhibitor of cAMP response element-binding protein binding to DNA. Mol.Pharmacol., 82, 2012
8HSI	Cryo-EM structure of human TMEM87A, PE-bound 分子名称: (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ... 著者 Han, A, Kim, H.M. 登録日 2022-12-19 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM structure of human TMEM87A, PE-bound To Be Published
4KGE	Crystal structure of near-infrared fluorescent protein with an extended stokes shift, pH 4.5 分子名称: CHLORIDE ION, TagRFP675, red fluorescent protein 著者 Malashkevich, V.N, Piatkevich, K, Almo, S.C, Verkhusha, V, New York Structural Genomics Research Consortium (NYSGRC) 登録日 2013-04-29 公開日 2013-05-08 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant. Sci Rep, 3, 2013
4KGF	Crystal structure of near-infrared fluorescent protein with an extended stokes shift, ph 8.0 分子名称: CHLORIDE ION, TagRFP675, red fluorescent protein 著者 Malashkevich, V.N, Piatkevich, K, Almo, S.C, Verkhusha, V, New York Structural Genomics Research Consortium (NYSGRC) 登録日 2013-04-29 公開日 2013-05-08 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant. Sci Rep, 3, 2013
7KVV	Crystal structure of Squash RNA aptamer in complex with DFHBI-1T 分子名称: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, Squash RNA aptamer bound to DFHO 著者 Truong, L, Ferre-D'Amare, A.R. 登録日 2020-11-28 公開日 2022-01-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nat.Chem.Biol., 18, 2022
7KVT	Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... 著者 Truong, L, Ferre-D'Amare, A.R. 登録日 2020-11-28 公開日 2022-01-19 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nat.Chem.Biol., 18, 2022
7KVU	Crystal structure of Squash RNA aptamer in complex with DFHBI-1T 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, POTASSIUM ION, ... 著者 Truong, L, Ferre-D'Amare, A.R. 登録日 2020-11-28 公開日 2022-01-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nat.Chem.Biol., 18, 2022
2HPW	Green fluorescent protein from Clytia gregaria 分子名称: Green fluorescent protein 著者 Stepanyuk, G, Liu, Z.J, Vysotski, S.E, Lee, J, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG) 登録日 2006-07-17 公開日 2006-09-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal Structure of Green Fluorescent Protein from Clytia Gregaria at 1.55 A resolution To be Published
6WV4	Human VKOR C43S with warfarin 分子名称: S-WARFARIN, Vitamin K epoxide reductase Cys43Ser mutant, termini restrained by green fluorescent protein 著者 Liu, S, Sukumar, N, Li, W. 登録日 2020-05-05 公開日 2020-11-11 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.012 Å) 主引用文献 Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation. Science, 371, 2021
6WV7	Human VKOR with Chlorophacinone 分子名称: Chlorophacinone, Vitamin K epoxide reductase, termini restrained by green fluorescent protein 著者 Liu, S, Sukumar, N, Li, W. 登録日 2020-05-05 公開日 2020-11-11 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.483 Å) 主引用文献 Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation. Science, 371, 2021
3ZU7	Crystal structure of a designed selected Ankyrin Repeat protein in complex with the MAP kinase ERK2 分子名称: DESIGNED ANKYRIN REPEAT PROTEIN, MITOGEN-ACTIVATED PROTEIN KINASE 1 著者 Kummer, L, Mittl, P.R, Pluckthun, A. 登録日 2011-07-16 公開日 2012-06-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Structural and Functional Analysis of Phosphorylation-Specific Binders of the Kinase Erk from Designed Ankyrin Repeat Protein Libraries. Proc.Natl.Acad.Sci.USA, 109, 2012
3ZUV	Crystal structure of a designed selected Ankyrin Repeat protein in complex with the phosphorylated MAP kinase ERK2 分子名称: DESIGNED ANKYRIN REPEAT PROTEIN, MITOGEN-ACTIVATED PROTEIN KINASE 1, SULFATE ION 著者 Kummer, L, Mittl, P.R, Pluckthun, A. 登録日 2011-07-20 公開日 2012-06-27 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Structural and Functional Analysis of Phosphorylation-Specific Binders of the Kinase Erk from Designed Ankyrin Repeat Protein Libraries. Proc.Natl.Acad.Sci.USA, 109, 2012

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