PDB: 97138 件ウェブページステータス検索Chemie searchBIRD

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4NQD	Crystal structure of TCR-MR1 ternary complex and non-covalently bound 5-(2-oxopropylideneamino)-6-D-ribitylaminouracil 分子名称: 1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, GLYCEROL, ... 著者 Birkinshaw, R.W, Rossjohn, J. 登録日 2013-11-25 公開日 2014-04-16 最終更新日 2014-11-19 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature, 509, 2014
1L39	CONTRIBUTIONS OF ENGINEERED SURFACE SALT BRIDGES TO THE STABILITY OF T4 LYSOZYME DETERMINED BY DIRECTED MUTAGENESIS 分子名称: T4 LYSOZYME 著者 Daopin, S, Matthews, B.W. 登録日 1991-01-28 公開日 1991-10-15 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis. Biochemistry, 30, 1991
8P62	S. cerevisiae ssDNA-sCMGE after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-25 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
8P63	S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-25 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
8P7E	Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200 in complex with benzylamine 分子名称: BENZYLAMINE, Lipase 著者 Mokos, D, Gruber, K, Daniel, B. 登録日 2023-05-30 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Amide formation of (hetero)aromatic esters and primary amines in buffer catalyzed by serine hydrolases: An Asp next to Ser of the catalytic triad of serine hydrolases is crucial for activity To Be Published
8P8F	Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200 in complex with N-benzyl-picolinamide 分子名称: Lipase, ~{N}-(phenylmethyl)pyridine-2-carboxamide 著者 Mokos, D, Gruber, K, Daniel, B. 登録日 2023-06-01 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Amide formation of (hetero)aromatic esters and primary amines in buffer catalyzed by serine hydrolases: An Asp next to Ser of the catalytic triad of serine hydrolases is crucial for activity To Be Published
6X0N	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin 分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ... 著者 Halic, M, Bilokapic, S. 登録日 2020-05-16 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
8D4A	Cas12a2 quaternary complex 分子名称: DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Bravo, J.P.K, Taylor, D.W. 登録日 2022-06-01 公開日 2023-01-18 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (2.74 Å) 主引用文献 RNA targeting unleashes indiscriminate nuclease activity of CRISPR-Cas12a2. Nature, 613, 2023
4N90	Crystal structure of ternary complex of TRAIL, DR5, and Fab fragment from a DR5 agonist antibody 分子名称: Fab heavy chain, Fab light chain, Tumor necrosis factor ligand superfamily member 10, ... 著者 Huang, X. 登録日 2013-10-18 公開日 2014-09-03 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Apo2L/TRAIL and the Death Receptor 5 Agonist Antibody AMG 655 Cooperate to Promote Receptor Clustering and Antitumor Activity. Cancer Cell, 26, 2014
4NQE	Crystal structure of TCR-MR1 ternary complex bound to 5-(2-oxoethylideneamino)-6-D-ribitylaminouracil 分子名称: 1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxoethylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, Major histocompatibility complex class I-related gene protein, ... 著者 Birkinshaw, R.W, Rossjohn, J. 登録日 2013-11-25 公開日 2014-04-16 最終更新日 2020-02-19 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature, 509, 2014
3PXZ	CDK2 ternary complex with JWS648 and ANS 分子名称: 2-(4,6-diamino-1,3,5-triazin-2-yl)-4-methoxyphenol, 8-ANILINO-1-NAPHTHALENE SULFONATE, Cell division protein kinase 2 著者 Betzi, S, Alam, R, Schonbrunn, E. 登録日 2010-12-10 公開日 2011-02-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Discovery of a Potential Allosteric Ligand Binding Site in CDK2. Acs Chem.Biol., 6, 2011
8E3X	Cryo-EM structure of the PAC1R-PACAP27-Gs complex 分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ... 著者 Piper, S.J, Danev, R, Sexton, P, Wootten, D. 登録日 2022-08-17 公開日 2022-11-23 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 Understanding VPAC receptor family peptide binding and selectivity. Nat Commun, 13, 2022
1BC4	THE SOLUTION STRUCTURE OF A CYTOTOXIC RIBONUCLEASE FROM THE OOCYTES OF RANA CATESBEIANA (BULLFROG), NMR, 15 STRUCTURES 分子名称: RIBONUCLEASE 著者 Chang, C.-F, Chen, C, Chen, Y.-C, Hom, K, Huang, R.-F, Huang, T. 登録日 1998-05-05 公開日 1998-10-14 最終更新日 2019-12-25 実験手法 SOLUTION NMR 主引用文献 The solution structure of a cytotoxic ribonuclease from the oocytes of Rana catesbeiana (bullfrog). J.Mol.Biol., 283, 1998
181D	SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) 分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') 著者 Sadasivan, C, Gautham, N. 登録日 1994-07-22 公開日 1995-07-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J.Mol.Biol., 248, 1995
3U87	Structure of a chimeric construct of human CK2alpha and human CK2alpha' in complex with a non-hydrolysable ATP-analogue 分子名称: CHLORIDE ION, Casein kinase II subunit alpha, GLYCEROL, ... 著者 Niefind, K, Raaf, J, Issinger, O.-G, Olsen, B. 登録日 2011-10-16 公開日 2012-05-30 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Low-density crystal packing of human protein kinase CK2 catalytic subunit in complex with resorufin or other ligands: a tool to study the unique hinge-region plasticity of the enzyme without packing bias. Acta Crystallogr.,Sect.D, 68, 2012
1WAF	DNA POLYMERASE FROM BACTERIOPHAGE RB69 分子名称: DNA POLYMERASE, GUANOSINE 著者 Wang, J, Satter, A.K.M.A, Wang, C.C, Karam, J.D, Konigsberg, W.H, Steitz, T.A. 登録日 1997-04-13 公開日 1998-01-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell(Cambridge,Mass.), 89, 1997
1WAJ	DNA POLYMERASE FROM BACTERIOPHAGE RB69 分子名称: DNA POLYMERASE, GUANOSINE-5'-MONOPHOSPHATE 著者 Wang, J, Satter, A.K.M.A, Wang, C.C, Karam, J.D, Konigsberg, W.H, Steitz, T.A. 登録日 1997-04-13 公開日 1998-01-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell(Cambridge,Mass.), 89, 1997
1ARR	RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR 分子名称: ARC REPRESSOR 著者 Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R. 登録日 1993-08-24 公開日 1994-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J.Mol.Biol., 236, 1994
1ARQ	RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR 分子名称: ARC REPRESSOR 著者 Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R. 登録日 1993-08-24 公開日 1994-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J.Mol.Biol., 236, 1994
7SYS	Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). 分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ... 著者 Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J. 登録日 2021-11-25 公開日 2022-07-27 最終更新日 2022-08-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES. Embo J., 41, 2022
7SYR	Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). 分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ... 著者 Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J. 登録日 2021-11-25 公開日 2022-07-27 最終更新日 2022-08-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES. Embo J., 41, 2022
3NYQ	Malonyl-CoA Ligase Ternary Product Complex with Methylmalonyl-CoA and AMP bound 分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... 著者 Hughes, A.J, Keatinge-Clay, A.T. 登録日 2010-07-15 公開日 2011-03-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Enzymatic Extender Unit Generation for In Vitro Polyketide Synthase Reactions: Structural and Functional Showcasing of Streptomyces coelicolor MatB. Chem.Biol., 18, 2011
5T62	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex 分子名称: 25S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Malyutin, A.G, Musalgaonkar, S, Patchett, S, Frank, J, Johnson, A.W. 登録日 2016-09-01 公開日 2017-02-08 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. EMBO J., 36, 2017
4LHD	Crystal structure of Synechocystis sp. PCC 6803 glycine decarboxylase (P-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop 分子名称: 1,2-ETHANEDIOL, BICARBONATE ION, GLYCINE, ... 著者 Hasse, D, Andersson, E, Carlsson, G, Masloboy, A, Hagemann, M, Bauwe, H, Andersson, I. 登録日 2013-07-01 公開日 2013-10-16 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.7959 Å) 主引用文献 Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem., 288, 2013
4LGL	Crystal Structure of Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803, apo form 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Glycine dehydrogenase [decarboxylating] 著者 Hasse, D, Andersson, E, Carlsson, G, Masloboy, A, Hagemann, M, Bauwe, H, Andersson, I. 登録日 2013-06-28 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.0004 Å) 主引用文献 Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem., 288, 2013

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