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6M8Z
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BU of 6m8z by Molmil
Crystal structure of human DJ-1 without a modification on Cys-106
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Protein/nucleic acid deglycase DJ-1
著者Shumilin, I.A, Shabalin, I.G, Shumilina, S.V, Werenskjold, C, Utepbergenov, D, Minor, W.
登録日2018-08-22
公開日2018-09-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献A transient post-translational modification of active site cysteine alters binding properties of the parkinsonism protein DJ-1.
Biochem. Biophys. Res. Commun., 504, 2018
6M81
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Crystal structure of TylM1 Y14F bound to SAH and dTDP-phenol
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phenoxy)phosphoryl]oxy}phosphoryl]thymidine, S-ADENOSYL-L-HOMOCYSTEINE, dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
著者Fick, R.J, McDole, B.G, Trievel, R.C.
登録日2018-08-21
公開日2019-03-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.782 Å)
主引用文献Structural and Functional Characterization of Sulfonium Carbon-Oxygen Hydrogen Bonding in the Deoxyamino Sugar Methyltransferase TylM1.
Biochemistry, 58, 2019
6M83
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Crystal structure of TylM1 S120A bound to SAH and dTDP-phenol
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phenoxy)phosphoryl]oxy}phosphoryl]thymidine, CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Fick, R.J, McDole, B.G, Trievel, R.C.
登録日2018-08-21
公開日2019-03-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3685 Å)
主引用文献Structural and Functional Characterization of Sulfonium Carbon-Oxygen Hydrogen Bonding in the Deoxyamino Sugar Methyltransferase TylM1.
Biochemistry, 58, 2019
1R2K
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BU of 1r2k by Molmil
Crystal structure of MoaB from Escherichia coli
分子名称: Molybdenum cofactor biosynthesis protein B, SULFATE ION
著者Bader, G, Gomez-Ortiz, M, Haussmann, C, Bacher, A, Huber, R, Fischer, M.
登録日2003-09-28
公開日2004-06-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the molybdenum-cofactor biosynthesis protein MoaB of Escherichia coli.
Acta Crystallogr.,Sect.D, 60, 2004
1VGC
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BU of 1vgc by Molmil
GAMMA-CHYMOTRYPSIN L-PARA-CHLORO-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX
分子名称: GAMMA CHYMOTRYPSIN, L-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ETHANE BORONIC ACID, SULFATE ION
著者Stoll, V.S, Eger, B.T, Hynes, R.C, Martichonok, V, Jones, J.B, Pai, E.F.
登録日1997-05-01
公開日1997-11-12
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Differences in binding modes of enantiomers of 1-acetamido boronic acid based protease inhibitors: crystal structures of gamma-chymotrypsin and subtilisin Carlsberg complexes.
Biochemistry, 37, 1998
4ZLO
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BU of 4zlo by Molmil
Serine/threonine-protein kinase PAK1 complexed with a dibenzodiazepine: identification of an allosteric site on PAK1
分子名称: 2,8-difluoro-11-(4-methylpiperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine, GLYCEROL, Serine/threonine-protein kinase PAK 1
著者Bellamacina, C.R, Bussiere, D.E.
登録日2015-05-01
公開日2015-08-05
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Optimization of a Dibenzodiazepine Hit to a Potent and Selective Allosteric PAK1 Inhibitor.
Acs Med.Chem.Lett., 6, 2015
4ZT9
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BU of 4zt9 by Molmil
Nuclease-inactive Streptococcus pyogenes Cas9 (D10A/H840A, dCas9) in complex with single-guide RNA at 3.1 Angstrom resolution
分子名称: CRISPR-associated endonuclease Cas9, single-guide RNA
著者Jiang, F, Doudna, J.A.
登録日2015-05-14
公開日2015-07-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A Cas9-guide RNA complex preorganized for target DNA recognition.
Science, 348, 2015
4ZT0
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Crystal structure of catalytically-active Streptococcus pyogenes Cas9 in complex with single-guide RNA at 2.9 Angstrom resolution
分子名称: CRISPR-associated endonuclease Cas9, single-guide RNA
著者Jiang, F, Doudna, J.A.
登録日2015-05-14
公開日2015-07-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A Cas9-guide RNA complex preorganized for target DNA recognition.
Science, 348, 2015
5A0F
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BU of 5a0f by Molmil
Crystal structure of Yersinia Afp18-modified RhoA
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, GUANOSINE-5'-DIPHOSPHATE, SULFATE ION, ...
著者Jank, T, Schimpl, M, van Aalten, D.M.
登録日2015-04-20
公開日2015-07-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Tyrosine glycosylation of Rho by Yersinia toxin impairs blastomere cell behaviour in zebrafish embryos.
Nat Commun, 6, 2015
5A4C
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BU of 5a4c by Molmil
FGFR1 ligand complex
分子名称: 1,2-ETHANEDIOL, 1-tert-butyl-3-[2-[3-(diethylamino)propylamino]-6-(3,5-dimethoxyphenyl)pyrido[2,3-d]pyrimidin-7-yl]urea, FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE KINASE 2, ...
著者Klein, T, Vajpai, N, Phillips, J.J, Davies, G, Holdgate, G.A, Phillips, C, Tucker, J.A, Norman, R.A, Scott, A.S, Higazi, D.R, Lowe, D, Thompson, G.S, Breeze, A.L.
登録日2015-06-05
公開日2015-08-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structural and Dynamic Insights Into the Energetics of Activation Loop Rearrangement in Fgfr1 Kinase.
Nat.Commun., 6, 2015
7RYQ
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BU of 7ryq by Molmil
Cryo-EM map of KIFBP
分子名称: KIF-binding protein
著者Tan, Z, Solon, A.L, Cianfrocco, M.A.
登録日2021-08-25
公開日2021-09-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Kinesin-binding protein remodels the kinesin motor to prevent microtubule binding.
Sci Adv, 7, 2021
7RYP
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BU of 7ryp by Molmil
Cryo-EM structure of KIFBP:KIF15
分子名称: KIF-binding protein, Kinesin-like protein KIF15
著者Solon, A.L, Tan, Z, Schutt, K.L, Jepsen, L, Haynes, S.E, Nesvizhskii, A.I, Sept, D, Stumpff, J, Ohi, R, Cianfrocco, M.A.
登録日2021-08-25
公開日2021-09-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Kinesin-binding protein remodels the kinesin motor to prevent microtubule binding.
Sci Adv, 7, 2021
7D29
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BU of 7d29 by Molmil
CBM32 of AlyQ
分子名称: AlyQ, CALCIUM ION
著者Teh, A.H, Sim, P.F.
登録日2020-09-16
公開日2020-12-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for binding uronic acids by family 32 carbohydrate-binding modules.
Biochem.Biophys.Res.Commun., 533, 2020
7S0P
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BU of 7s0p by Molmil
Crystal structure of Porcine Factor VIII C2 Domain Bound to Phosphatidylserine
分子名称: Coagulation factor VIII, PHOSPHOSERINE
著者Peters, S.C, Childers, K.C, Wo, S.W, Brison, C.M, Swanson, C.D, Spiegel, P.C.
登録日2021-08-30
公開日2021-10-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Stable binding to phosphatidylserine-containing membranes requires conserved arginine residues in tandem C domains of blood coagulation factor VIII.
Front Mol Biosci, 9, 2022
3VGN
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BU of 3vgn by Molmil
Crystal Structure of Ketosteroid Isomerase D40N from Pseudomonas putida (pKSI) with bound 3-fluoro-4-nitrophenol
分子名称: 3-fluoro-4-nitrophenol, Steroid Delta-isomerase
著者Caaveiro, J.M.M, Pybus, B, Ringe, D, Petsko, G.A, Sigala, P.A.
登録日2011-08-16
公開日2012-08-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site
Proc.Natl.Acad.Sci.USA, 110, 2013
3VUA
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BU of 3vua by Molmil
Apo IsdH-NEAT3 in space group P3121 at a resolution of 1.85 A
分子名称: ACETATE ION, GLYCEROL, Iron-regulated surface determinant protein H, ...
著者Vu, N.T, Caaveiro, J.M.M, Moriwaki, Y, Tsumoto, K.
登録日2012-06-26
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin
To be Published
6RCX
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BU of 6rcx by Molmil
Mycobacterial 4'-phosphopantetheinyl transferase PptAb in complex with the ACP domain of PpsC.
分子名称: CACODYLATE ION, COENZYME A, MANGANESE (II) ION, ...
著者Nguyen, M.C, Mourey, L, Pedelacq, J.D.
登録日2019-04-12
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformational flexibility of coenzyme A and its impact on the post-translational modification of acyl carrier proteins by 4'-phosphopantetheinyl transferases.
Febs J., 287, 2020
3VIU
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BU of 3viu by Molmil
Crystal structure of PurL from thermus thermophilus
分子名称: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Suzuki, S, Yanai, H, Kanagawa, M, Tamura, S, Watanabe, Y, Fuse, K, Baba, S, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-10-12
公開日2012-01-18
最終更新日2012-04-25
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure of N-formylglycinamide ribonucleotide amidotransferase II (PurL) from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 68, 2012
6RA0
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BU of 6ra0 by Molmil
A ubiquitin-like dimerization domain controls protein kinase D activation by trans-autophosphorylation
分子名称: Serine/threonine-protein kinase dkf-1, ZINC ION
著者Elsner, D.J, Leonard, T.A.
登録日2019-04-05
公開日2019-08-14
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献A ubiquitin-like domain controls protein kinase D dimerization and activation by trans-autophosphorylation.
J.Biol.Chem., 294, 2019
6RML
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BU of 6rml by Molmil
Crystal structure of TOPBP1 BRCT0,1,2 in complex with a 53BP1 phosphopeptide
分子名称: 53BP1, DNA topoisomerase 2-binding protein 1
著者Day, M, Oliver, A.W, Pearl, L.H.
登録日2019-05-07
公開日2019-06-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Phosphorylation-mediated interactions with TOPBP1 couple 53BP1 and 9-1-1 to control the G1 DNA damage checkpoint.
Elife, 8, 2019
6RS2
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BU of 6rs2 by Molmil
Structure of the Bateman module of human CNNM4.
分子名称: Metal transporter CNNM4
著者Corral-Rodriguez, M.A, Stuiver, M, Gomez-Garcia, I, Oyenarte, I, Gimenez, P, Ereno-Orbea, J, Diercks, T, Muller, D, Martinez-Cruz, L.A.
登録日2019-05-21
公開日2020-07-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.694 Å)
主引用文献Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4.
Int J Mol Sci, 20, 2019
3VU4
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Crystal structure of Kluyvelomyces marxianus Hsv2
分子名称: KmHsv2, SULFATE ION
著者Watanabe, Y, Noda, N.N.
登録日2012-06-15
公開日2012-07-04
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18.
J.Biol.Chem., 287, 2012
6RXG
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BU of 6rxg by Molmil
Crystal Structure of Bifidobacterium longum Multiple Inositol Polyphosphate Phosphatase Complex with Phosphate
分子名称: Histidine acid phosphatase, PHOSPHATE ION, ZINC ION
著者Zietek, M.A.Z, Brearley, C.A, Hemmings, A.M.
登録日2019-06-07
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced-fit structural mechanism.
J.Biol.Chem., 295, 2020
6RNS
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BU of 6rns by Molmil
Crystal structure of the dimerization domain of Gemin5 at 2.7 A
分子名称: Gem-associated protein 5, IODIDE ION
著者Moreno-Morcillo, M, Ramon-Maiques, S, Martinez-Salas, E.
登録日2019-05-09
公開日2019-11-27
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Structural basis for the dimerization of Gemin5 and its role in protein recruitment and translation control.
Nucleic Acids Res., 48, 2020
6RXF
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BU of 6rxf by Molmil
Crystal Structure of Bifidobacterium longum Multiple Inositol Polyphosphate Phosphatase Phosphohistidine Intermediate
分子名称: Histidine acid phosphatase, ZINC ION
著者Acquistapace, I.M, Brearley, C.A, Hemmings, A.M.
登録日2019-06-07
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced-fit structural mechanism.
J.Biol.Chem., 295, 2020

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