PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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1Q3B	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The R252A mutant at 2.05 resolution. 分子名称: Endonuclease VIII, GLYCEROL, MAGNESIUM ION, ... 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
3IVP	The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630. 分子名称: Putative transposon-related DNA-binding protein, TETRAETHYLENE GLYCOL 著者 Tan, K, Marshall, N, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-09-01 公開日 2009-09-22 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 The structure of a possible transposon-related DNA-binding protein from Clostridium difficile 630. To be Published
3RLN	Structural Basis of Cytosolic DNA Recognition by Innate Immune Receptors 分子名称: Gamma-interferon-inducible protein 16 著者 Jin, T.C, Xiao, T. 登録日 2011-04-19 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.251 Å) 主引用文献 Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor. Immunity, 36, 2012
3RLO	Structural Basis of Cytosolic DNA Recognition by Innate Receptors 分子名称: 1,2-ETHANEDIOL, FORMIC ACID, Gamma-interferon-inducible protein 16 著者 Jin, T.C, Xiao, T. 登録日 2011-04-19 公開日 2012-04-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor. Immunity, 36, 2012
1KSE	Solution Structure of a quinolone-capped DNA duplex 分子名称: 5'-D(*(5AT)P*GP*CP*GP*CP*A)-3', OXOLINIC ACID 著者 Tuma, J, Connors, W.H, Stitelman, D.H, Richert, C. 登録日 2002-01-12 公開日 2002-05-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 On the effect of covalently appended quinolones on termini of DNA duplexes. J.Am.Chem.Soc., 124, 2002
3EY0	A new form of DNA-drug interaction in the minor groove of a coiled coil 分子名称: 1,5-BIS(4-AMIDINOPHENOXY)PENTANE, 5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DAP*DTP*DAP*DT)-3', MAGNESIUM ION 著者 Pous, J, Moreno, T, Subirana, J.A, Campos, J.L. 登録日 2008-10-17 公開日 2009-10-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Coiled-coil conformation of a pentamidine-DNA complex Acta Crystallogr.,Sect.D, 66, 2010
4EFB	Crystal structure of DNA ligase 分子名称: 4-amino-2-(cyclopentyloxy)-6-{[(1R,2S)-2-hydroxycyclopentyl]oxy}pyrimidine-5-carboxamide, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, ... 著者 Wei, Y, Wang, T, Charifson, P, Xu, W. 登録日 2012-03-29 公開日 2013-04-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of DNA ligase To be Published
2BGU	CRYSTAL STRUCTURE OF THE DNA MODIFYING ENZYME BETA-GLUCOSYLTRANSFERASE IN THE PRESENCE AND ABSENCE OF THE SUBSTRATE URIDINE DIPHOSPHOGLUCOSE 分子名称: BETA-GLUCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE 著者 Vrielink, A, Rueger, W, Driessen, H.P.C, Freemont, P.S. 登録日 1994-06-09 公開日 1995-12-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose. EMBO J., 13, 1994
5NZX	Crystal structure of DNA cross-link repair protein 1A in complex with Ceftriaxone (alternative site) 分子名称: Ceftriaxone, DNA cross-link repair 1A protein, NICKEL (II) ION 著者 Newman, J.A, Aitkenhead, H, Kupinska, K, Burgess-Brown, N.A, Talon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2017-06-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Crystal structure of DNA cross-link repair protein 1A in complex with Ceftriaxone (alternative site) To Be Published
7P2N	E.coli GyrB24 with inhibitor LSJ38 (EBL2684) 分子名称: 2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-5-oxidanyl-1,3-benzothiazole-6-carboxylic acid, DNA gyrase subunit B, PHOSPHATE ION 著者 Stevenson, C.E.M, Lawson, D.M, Maxwell, A.M, Henderson, S.R, Kikelj, D, Zega, A, Zidar, N, Ilas, J, Tomasic, T, Masic, L.P. 登録日 2021-07-06 公開日 2022-07-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 Exploring the 5-Substituted 2-Aminobenzothiazole-Based DNA Gyrase B Inhibitors Active against ESKAPE Pathogens. Acs Omega, 8, 2023
2BGT	CRYSTAL STRUCTURE OF THE DNA MODIFYING ENZYME BETA-GLUCOSYLTRANSFERASE IN THE PRESENCE AND ABSENCE OF THE SUBSTRATE URIDINE DIPHOSPHOGLUCOSE 分子名称: BETA-GLUCOSYLTRANSFERASE 著者 Vrielink, A, Rueger, W, Driessen, H.P.C, Freemont, P.S. 登録日 1994-06-09 公開日 1995-12-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose. EMBO J., 13, 1994
8BGJ	Crystal structure of Reverse Transcriptase domain from Caloramator australicus CART-CAPP 分子名称: L(+)-TARTARIC ACID, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ... 著者 Li, A.W.H, Doherty, A.J. 登録日 2022-10-27 公開日 2023-06-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Reverse transcriptases prime DNA synthesis. Nucleic Acids Res., 51, 2023
2MH2	Structural insights into the DNA recognition and protein interaction domains reveal fundamental homologous DNA pairing properties of HOP2 分子名称: Homologous-pairing protein 2 homolog 著者 Moktan, H, Guiraldelli, M.F, Eyter, C.A, Zhao, W, Camerini-Otero, R.D, Sung, P, Zhou, D.H, Pezza, R.J. 登録日 2013-11-13 公開日 2014-04-16 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure and DNA-binding Properties of the Winged Helix Domain of the Meiotic Recombination HOP2 Protein. J.Biol.Chem., 289, 2014
7Z3X	Crystal structure of FIR RRM1-2 Y115F mutant bound to FUSE ssDNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*T)-3'), DNA (5'-D(P*GP*TP*())-3'), ... 著者 Ni, X, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2022-03-02 公開日 2022-11-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of FIR RRM1-2 Y115F mutant bound to FUSE ssDNA To Be Published
8EFV	Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor 分子名称: 49-mer DNA, 51-mer DNA, ADENOSINE-5'-DIPHOSPHATE, ... 著者 Shen, Z.F, Rish, A.D, Fu, T.M. 登録日 2022-09-09 公開日 2023-05-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor To Be Published
1M6R	Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang 分子名称: 5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' 著者 Pan, B, Sundaralingam, M. 登録日 2002-07-17 公開日 2003-02-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang. Acta Crystallogr.,Sect.D, 59, 2003
7QFN	Human Topoisomerase II Beta ATPase ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, MAGNESIUM ION, ... 著者 Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A. 登録日 2021-12-06 公開日 2022-05-25 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.621 Å) 主引用文献 A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193. Structure, 30, 2022
7QFO	Human Topoisomerase II Beta ATPase AMPPNP 分子名称: ALANINE, DNA topoisomerase 2-beta, MAGNESIUM ION, ... 著者 Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A. 登録日 2021-12-06 公開日 2022-05-25 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193. Structure, 30, 2022
3HGD	Crystal Structure of 2-Se-Thymidine Derivatized DNA 分子名称: 5'-D(*GP*(UMS)P*GP*(US3)P*AP*CP*AP*C)-3' 著者 Sheng, J, Hassan, A.E, Zhang, W, Huang, Z. 登録日 2009-05-13 公開日 2009-08-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 High fidelity of base pairing by 2-selenothymidine in DNA. J.Am.Chem.Soc., 132, 2010
1FHY	PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION 分子名称: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, CALCIUM ION, DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3') 著者 Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S. 登録日 2000-08-02 公開日 2001-04-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions. J.Mol.Biol., 308, 2001
1RRQ	MutY adenine glycosylase in complex with DNA containing an A:oxoG pair 分子名称: 5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3', 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', CALCIUM ION, ... 著者 Fromme, J.C, Banerjee, A, Huang, S.J, Verdine, G.L. 登録日 2003-12-08 公開日 2004-02-17 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase Nature, 427, 2004
1LU5	2.4 Angstrom Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex 分子名称: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3', CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX 著者 Silverman, A.P, Bu, W, Cohen, S.M, Lippard, S.J. 登録日 2002-05-21 公開日 2002-12-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 2.4-A Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex J.Biol.Chem., 277, 2002
1Q3U	Crystal structure of a wild-type Cre recombinase-loxP synapse: pre-cleavage complex 分子名称: Cre recombinase, IODIDE ION, MAGNESIUM ION, ... 著者 Ennifar, E, Meyer, J.E.W, Buchholz, F, Stewart, A.F, Suck, D. 登録日 2003-08-01 公開日 2003-09-16 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Nucleic Acids Res., 31, 2003
1ECL	AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1). 分子名称: ESCHERICHIA COLI TOPOISOMERASE I 著者 Lima, C.D, Wang, J.C, Mondragon, A. 登録日 1995-05-05 公開日 1995-07-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature, 367, 1994
6R14	Structure of kiteplatinated dsDNA 分子名称: Kiteplatin, Kiteplatinated DNA oligomer, chain A, ... 著者 Margiotta, N, Papadia, P, Kubicek, K, Krejcikova, M, Gkionis, K, Sponer, J. 登録日 2019-03-13 公開日 2020-04-01 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural characterization of kiteplatinated DNA To Be Published

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