PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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4M61	Crystal structure of unliganded anti-DNA Fab A52 分子名称: Fab A52 heavy chain, Fab A52 light chain, SULFATE ION 著者 Stanfield, R.L, Eilat, D, Wilson, I.A. 登録日 2013-08-08 公開日 2013-08-28 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Crystal structure determination of anti-DNA Fab A52. Proteins, 82, 2014
6W35	A new Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-fluoranyl-~{N}-[(2~{R})-1-[1-(2~{H}-indazol-5-yl)-3-methyl-2,4-bis(oxidanylidene)-1,3,8-triazaspiro[4.5]decan-8-yl]-3-methyl-1-oxidanylidene-butan-2-yl]-5-(trifluoromethyl)benzamide, CALCIUM ION, ... 著者 Cuozzo, J.W. 登録日 2020-03-09 公開日 2020-07-08 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Novel Autotaxin Inhibitor for the Treatment of Idiopathic Pulmonary Fibrosis: A Clinical Candidate Discovered Using DNA-Encoded Chemistry. J.Med.Chem., 63, 2020
2XQC	DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE COMPLEXED WITH LEFT END RECOGNITION AND CLEAVAGE SITE AND ZN 分子名称: 5'-D(TP*TP*GP*AP*TP*GP)-3', DRA2 TRANSPOSASE LEFT END RECOGNITION SEQUENCE, TRANSPOSASE, ... 著者 Hickman, A.B, James, J.A, Barabas, O, Pasternak, C, Ton-Hoang, B, Chandler, M, Sommer, S, Dyda, F. 登録日 2010-09-01 公開日 2010-10-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 DNA Recognition and the Precleavage State During Single-Stranded DNA Transposition in D. Radiodurans. Embo J., 29, 2010
1I6J	CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE 分子名称: 5'-D(*AP*CP*GP*GP*GP*AP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*TP*C)-3', REVERSE TRANSCRIPTASE 著者 Cote, M.L, Georgiadis, M.M. 登録日 2001-03-02 公開日 2001-09-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a pseudo-16-mer DNA with stacked guanines and two G-A mispairs complexed with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase. Acta Crystallogr.,Sect.D, 57, 2001
1NAB	The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes 分子名称: 5'-D(*CP*GP*AP*TP*CP*G)-3', 7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE 著者 Temperini, C, Messori, L, Orioli, P, Di Bugno, C, Animati, F, Ughetto, G. 登録日 2002-11-27 公開日 2003-02-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes Nucleic Acids Res., 31, 2003
5OL5	Crystal structure of an inactivated Ssp SICLOPPS intein with CFAHPQ extein 分子名称: 1,2-ETHANEDIOL, COBALT (II) ION, DNA polymerase III subunit alpha,DNA polymerase III subunit alpha, ... 著者 Kick, L.M, Schneider, S. 登録日 2017-07-26 公開日 2017-09-27 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.329 Å) 主引用文献 Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation. Chembiochem, 18, 2017
5E5S	I-SmaMI K103A mutant 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, Bottom strand DNA, DNA (5'-D(P*CP*AP*GP*GP*TP*GP*TP*AP*CP*G)-3'), ... 著者 Shen, B.W. 登録日 2015-10-09 公開日 2016-01-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease. J.Mol.Biol., 428, 2016
3SSF	Crystal structure of RNA:DNA dodecamer corresponding to HIV-1 polypurine tract, at 1.6 A resolution. 分子名称: 5'-D(*CP*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*A)-3', 5'-R(*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*GP*G)-3', MAGNESIUM ION 著者 Drozdzal, P, Michalska, K, Kierzek, R, Lomozik, L, Jaskolski, M. 登録日 2011-07-08 公開日 2012-02-08 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of an RNA/DNA dodecamer corresponding to the HIV-1 polypurine tract at 1.6 Angstrom resolution Acta Crystallogr.,Sect.D, 68, 2012
1RSB	X-ray study of the DNA oligomer d(ATATAT) in P65 space group 分子名称: 5'-D(*AP*TP*AP*TP*AP*T)-3' 著者 Abrescia, N.G, Gonzalez, C, Gouyette, C, Subirana, J.A. 登録日 2003-12-09 公開日 2004-05-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 X-ray and NMR studies of the DNA oligomer d(ATATAT): Hoogsteen base pairing in duplex DNA. Biochemistry, 43, 2004
8VX9	Structure of HamAB apo complex from the Escherichia coli Hachiman defense system 分子名称: HamA, HamB 著者 Tuck, O.T, Doudna, J.A. 登録日 2024-02-03 公開日 2024-03-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.65 Å) 主引用文献 Hachiman is a genome integrity sensor. Biorxiv, 2024
2BAM	RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND CALCIUM IONS (PRE-REACTIVE COMPLEX). 分子名称: CALCIUM ION, DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), PROTEIN (ENDONUCLEASE BAMHI) 著者 Viadiu, H, Aggarwal, A.K. 登録日 1998-08-19 公開日 1999-10-31 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The role of metals in catalysis by the restriction endonuclease BamHI. Nat.Struct.Biol., 5, 1998
2XO6	DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE Y132F MUTANT COMPLEXED WITH LEFT END RECOGNITION AND CLEAVAGE SITE 分子名称: 5'-D(*TP*TP*GP*AP*TP*G)-3', ACETATE ION, CADMIUM ION, ... 著者 Hickman, A.B, James, J.A, Barabas, O, Pasternak, C, Ton-Hoang, B, Chandler, M, Sommer, S, Dyda, F. 登録日 2010-08-09 公開日 2010-10-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 DNA Recognition and the Precleavage State During Single-Stranded DNA Transposition in D. Radiodurans. Embo J., 29, 2010
4BG7	Bacteriophage T5 Homolog of the Eukaryotic Transcription Coactivator PC4 Implicated in Recombination-Dependent DNA Replication 分子名称: PUTATIVE TRANSCRIPTIONAL COACTIVATOR P15 著者 Steigemann, B, Schulz, A, Hinrichs, W, Werten, S. 登録日 2013-03-24 公開日 2013-09-11 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Bacteriophage T5 Encodes a Homolog of the Eukaryotic Transcription Coactivator Pc4 Implicated in Recombination-Dependent DNA Replication. J.Mol.Biol., 425, 2013
5TRD	Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator 分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*TP*TP*AP*CP*TP*AP*AP*TP*TP*CP*AP*CP*GP*AP*GP*TP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*AP*CP*TP*CP*GP*TP*GP*AP*AP*TP*TP*AP*GP*TP*AP*A)-3'), ... 著者 Vetting, M.W, Rodionova, I.A, Li, X, Osterman, A.L, Rodionov, D.A, Almo, S.C. 登録日 2016-10-26 公開日 2016-11-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator To be published
4HDV	Crystal structure of S. pombe ATL1 in complex with damaged DNA containing 2,6-diaminopurine 分子名称: 5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3', 5'-D(*GP*CP*CP*AP*TP*GP*(1AP)P*CP*TP*AP*GP*TP*A)-3', Alkyltransferase-like protein 1 著者 Tubbs, J.L, Tainer, J.A. 登録日 2012-10-02 公開日 2012-12-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.702 Å) 主引用文献 Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-{pi} interactions. Proc.Natl.Acad.Sci.USA, 109, 2012
2HXM	Complex of UNG2 and a small Molecule synthetic Inhibitor 分子名称: 4-[(1E,7E)-8-(2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL)-3,6-DIOXA-2,7-DIAZAOCTA-1,7-DIEN-1-YL]BENZOIC ACID, Uracil-DNA glycosylase 著者 Bianchet, M.A, Krosky, D.J, Ghung, S, Seiple, L, Amzel, L.M, Stivers, J.T. 登録日 2006-08-03 公開日 2006-12-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Mimicking damaged DNA with a small molecule inhibitor of human UNG2. Nucleic Acids Res., 34, 2006
4L6P	Structure of C22Y Mutant PCNA protein defective in DNA mismatch repair 分子名称: GLYCEROL, Proliferating cell nuclear antigen 著者 Washington, T, Boehm, E. 登録日 2013-06-12 公開日 2014-10-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Distinct structural alterations in proliferating cell nuclear antigen block DNA mismatch repair. Biochemistry, 52, 2013
1Z1B	Crystal structure of a lambda integrase dimer bound to a COC' core site 分子名称: 26-MER DNA, 29-MER DNA, 5'-D(*CP*T*CP*GP*TP*TP*CP*AP*GP*CP*TP*TP*TP*TP*TP*T)-3', ... 著者 Biswas, T, Aihara, H, Radman-Livaja, M, Filman, D, Landy, A, Ellenberger, T. 登録日 2005-03-03 公開日 2005-06-28 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 A structural basis for allosteric control of DNA recombination by lambda integrase. Nature, 435, 2005
384D	HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA 分子名称: 5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3', MAGNESIUM ION 著者 Mayer-Jung, C, Moras, D, Timsit, Y. 登録日 1998-03-02 公開日 1998-03-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Hydration and Recognition of Methylated CpG Steps in DNA Embo J., 17, 1998
2ZXO	Crystal structure of RecJ from Thermus thermophilus HB8 分子名称: Single-stranded DNA specific exonuclease RecJ 著者 Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. 登録日 2009-01-05 公開日 2010-01-05 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem., 285, 2010
1RPZ	T4 POLYNUCLEOTIDE KINASE BOUND TO 5'-TGCAC-3' SSDNA 分子名称: 5'-D(*TP*GP*CP*AP*C)-3', ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ... 著者 Eastberg, J.H, Pelletier, J, Stoddard, B.L. 登録日 2003-12-03 公開日 2004-02-17 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase. Nucleic Acids Res., 32, 2004
4HDU	Crystal structure of S. pombe ATL1 in complex with damaged DNA containing 2-aminopurine 分子名称: 5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3', 5'-D(*GP*CP*CP*AP*TP*GP*(2PR)P*CP*TP*AP*GP*TP*A)-3', Alkyltransferase-like protein 1 著者 Tubbs, J.L, Tainer, J.A. 登録日 2012-10-02 公開日 2012-12-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.848 Å) 主引用文献 Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-{pi} interactions. Proc.Natl.Acad.Sci.USA, 109, 2012
2ZXP	Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8 分子名称: MANGANESE (II) ION, Single-stranded DNA specific exonuclease RecJ 著者 Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. 登録日 2009-01-05 公開日 2010-01-05 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem., 285, 2010
2ZXR	Crystal structure of RecJ in complex with Mg2+ from Thermus thermophilus HB8 分子名称: MAGNESIUM ION, Single-stranded DNA specific exonuclease RecJ 著者 Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. 登録日 2009-01-05 公開日 2010-01-05 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure of RecJ exonuclease defines its specificity for single-stranded DNA J.Biol.Chem., 285, 2010
1RRC	T4 POLYNUCLEOTIDE KINASE BOUND TO 5'-GTC-3' SSDNA 分子名称: 5'-D(*GP*TP*C)-3', ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ... 著者 Eastberg, J.H, Pelletier, J, Stoddard, B.L. 登録日 2003-12-08 公開日 2004-02-17 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase. Nucleic Acids Res., 32, 2004

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