PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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5E7K	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-10-12 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016
5FDV	Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Seefeldt, A.C, Graf, M, Perebaskine, N, Nguyen, F, Arenz, S, Mardirossian, M, Scocchi, M, Wilson, D.N, Innis, C.A. 登録日 2015-12-16 公開日 2016-01-27 最終更新日 2025-03-12 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome. Nucleic Acids Res., 44, 2016
5GAD	RNC-SRP-SR complex early state 分子名称: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-24 公開日 2016-01-27 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
5GAG	RNC in complex with SRP-SR in the closed state 分子名称: 1A9L SS, 23S rRNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-26 公開日 2016-01-27 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
7XAY	Crystal structure of Hat1-Hat2-Asf1-H3-H4 分子名称: COENZYME A, Histone H3, Histone H4, ... 著者 Yue, Y, Yang, W.S, Xu, R.M. 登録日 2022-03-19 公開日 2022-05-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Topography of histone H3-H4 interaction with the Hat1-Hat2 acetyltransferase complex. Genes Dev., 36, 2022
5GAF	RNC in complex with SRP 分子名称: 1A9L SS, 23S ribosomal RNA, 50S ribosomal protein L10, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-25 公開日 2016-02-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon Nat Commun, 7, 2016
4U25	Crystal structure of the E. coli ribosome bound to virginiamycin M1. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. 登録日 2014-07-16 公開日 2014-07-30 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
6Z6K	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
9MU8	Structure of a native Drosophila melanogaster Pol II Elongation Complex without Rpb4/Rpb7 stalk 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB12, ... 著者 Venette-Smith, N.L, Vishwakarma, R.K, Dollinger, R, Schultz, J, Venkatakrishnan, V, Babitzke, P, Anand, G, Gilmour, D.S, Armache, J.-P, Murakami, K. 登録日 2025-01-13 公開日 2025-05-14 実験手法 ELECTRON MICROSCOPY (3.37 Å) 主引用文献 Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster To Be Published
4U1V	Crystal structure of the E. coli ribosome bound to linopristin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. 登録日 2014-07-16 公開日 2014-07-30 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
4UG0	STRUCTURE OF THE HUMAN 80S RIBOSOME 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S RIBOSOMAL PROTEIN, ... 著者 Khatter, H, Myasnikov, A.G, Natchiar, S.K, Klaholz, B.P. 登録日 2015-03-20 公開日 2015-06-10 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of the human 80S ribosome NATURE, 520, 2015
5JQS	Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin 分子名称: 1,4-DIETHYLENE DIOXIDE, CHLORIDE ION, Protein FAM63A, ... 著者 Abdul Rehman, S.A, Kulathu, Y. 登録日 2016-05-05 公開日 2016-06-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 MINDY-1 Is a Member of an Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes. Mol.Cell, 63, 2016
6LMK	Cryo-EM structure of the human glucagon receptor in complex with Gs 分子名称: Glucagon, Glucagon receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... 著者 Qiao, A, Han, S, Tai, L, Sun, F, Zhao, Q, Wu, B. 登録日 2019-12-26 公開日 2020-04-01 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of Gsand Girecognition by the human glucagon receptor. Science, 367, 2020
5JZV	The structure of D77G hCINAP-ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase isoenzyme 6 著者 Liu, Y, Yang, Z, Yang, Y, Cai, X, Zheng, X. 登録日 2016-05-17 公開日 2016-08-10 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 The ATPase hCINAP regulates 18S rRNA processing and is essential for embryogenesis and tumour growth. Nat Commun, 7, 2016
5KFY	Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s then with 5 mM Mn2+ for 60s at 4 degree 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
6J2M	Crystal structure of AtFKBP53 C-terminal domain 分子名称: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, CHLORIDE ION, Peptidyl-prolyl cis-trans isomerase FKBP53 著者 Singh, A.K, Vasudevan, D. 登録日 2019-01-01 公開日 2019-12-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.13 Å) 主引用文献 AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains. Nucleic Acids Res., 48, 2020
6J2Z	AtFKBP53 N-terminal Nucleoplasmin Domain 分子名称: Peptidyl-prolyl cis-trans isomerase FKBP53 著者 Singh, A.K, Vasudevan, D. 登録日 2019-01-03 公開日 2019-12-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains. Nucleic Acids Res., 48, 2020
5KFE	Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 600s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KFO	Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 1 mM Mn2+ for 1800s 分子名称: 2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE), CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KG1	Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s then with 5 mM Mn2+ for 60s at 30 degree 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KFC	Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 180s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KFL	Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 600s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KFX	Human DNA polymerase eta R61A-DNA ternary complex: reaction with 1 mM Mg2+ for 300s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
4UKD	UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP, BERYLLIUM FLUORIDE 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM DIFLUORIDE, MAGNESIUM ION, ... 著者 Schlichting, I, Reinstein, J. 登録日 1997-05-20 公開日 1998-05-20 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structures of active conformations of UMP kinase from Dictyostelium discoideum suggest phosphoryl transfer is associative. Biochemistry, 36, 1997
6EYP	X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A 分子名称: GLYCEROL, MAGNESIUM ION, SODIUM ION, ... 著者 Prokofev, I.I, Balaev, V.V, Gabdoulkhakov, A.G, Betzel, C, Lashkov, A.A. 登録日 2017-11-13 公開日 2018-11-21 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A To Be Published

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