PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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1LU5	2.4 Angstrom Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex 分子名称: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3', CIS-(AMMINE)(CYCLOHEXYLAMINE)PLATINUM(II) COMPLEX 著者 Silverman, A.P, Bu, W, Cohen, S.M, Lippard, S.J. 登録日 2002-05-21 公開日 2002-12-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 2.4-A Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex J.Biol.Chem., 277, 2002
6W8W	Crystal structure of mouse DNMT1 in complex with CCG DNA 分子名称: CCG DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), CCG DNA (5'-D(*CP*CP*TP*TP*CP*(C49)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ... 著者 Anteneh, H, Song, J. 登録日 2020-03-21 公開日 2020-07-08 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context Nat Commun, 2020
1LA8	Solution structure of the DNA hairpin 13-mer CGCGGTGTCCGCG 分子名称: 5'-D(*CP*GP*CP*GP*GP*TP*GP*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Chem.Res.Toxicol., 15, 2002
5E63	K262A mutant of I-SmaMI 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 2-METHOXYETHANOL, DNA (5'-D(P*CP*AP*GP*GP*TP*GP*TP*AP*CP*G)-3'), ... 著者 Shen, B, Stoddard, B. 登録日 2015-10-09 公開日 2016-01-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease. J.Mol.Biol., 428, 2016
6VJI	Structure of mammalian NEIL2 from Monodelphis domestica 分子名称: Nei like DNA glycosylase 2, ZINC ION 著者 Eckenroth, B.E, Doublie, S. 登録日 2020-01-16 公開日 2020-08-12 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Unique Structural Features of Mammalian NEIL2 DNA Glycosylase Prime Its Activity for Diverse DNA Substrates and Environments. Structure, 29, 2021
1I11	SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN, SOX-5 HMG BOX FROM MOUSE 分子名称: TRANSCRIPTION FACTOR SOX-5 著者 Cary, P.D, Read, C.M, Davis, B, Driscoll, P.C, Crane-Robinson, C. 登録日 2001-01-30 公開日 2001-02-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the DNA-binding domain of mouse Sox-5. Protein Sci., 10, 2001
1P3F	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1LAE	Solution Structure of the DNA 13-mer Hairpin CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct at the Seventh Position 分子名称: 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' 著者 Weisenseel, J.P, Reddy, G.R, Marnett, L.J, Stone, M.P. 登録日 2002-03-28 公開日 2002-04-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the 1,N(2)-propanodeoxyguanosine adduct in a three-base DNA hairpin loop derived from a palindrome in the Salmonella typhimurium hisD3052 gene. Chem.Res.Toxicol., 15, 2002
1P3A	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
226D	SOLUTION CONFORMATION OF A BIZELESIN A-TRACT DUPLEX ADDUCT, NMR, 1 STRUCTURE 分子名称: BIZELESIN, DNA (5'-D(*CP*GP*TP*AP*AP*AP*AP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*TP*TP*TP*TP*AP*CP*G)-3') 著者 Thompson, A.S, Hurley, L.H. 登録日 1995-07-19 公開日 1996-01-29 最終更新日 2024-03-13 実験手法 SOLUTION NMR 主引用文献 Solution conformation of a bizelesin A-tract duplex adduct: DNA-DNA cross-linking of an A-tract straightens out bent DNA. J.Mol.Biol., 252, 1995
5H8C	Truncated XPD 分子名称: IRON/SULFUR CLUSTER, XPD/Rad3 related DNA helicase 著者 Naismith, J.H, Constantinescu, D. 登録日 2015-12-23 公開日 2016-01-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Mechanism of DNA loading by the DNA repair helicase XPD. Nucleic Acids Res., 44, 2016
5H8W	XPD mechanism 分子名称: ATP-dependent DNA helicase Ta0057, DNA (5'-D(P*TP*AP*CP*GP*A)-3'), IRON/SULFUR CLUSTER, ... 著者 Naismith, J.H, Constantinescu, D. 登録日 2015-12-24 公開日 2016-01-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mechanism of DNA loading by the DNA repair helicase XPD. Nucleic Acids Res., 44, 2016
6AMS	Crystal structure of the DNA polymerase III subunit beta from Pseudomonas aeruginosa 分子名称: Beta sliding clamp, PHOSPHATE ION 著者 McGrath, A.E, Oakley, A.J. 登録日 2017-08-11 公開日 2017-11-01 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018
1P3B	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1SA3	An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site 分子名称: 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3', SODIUM ION, Type II restriction enzyme MspI 著者 Xu, Q.S, Kucera, R.B, Roberts, R.J, Guo, H.C. 登録日 2004-02-06 公開日 2004-09-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site. STRUCTURE, 12, 2004
6WCD	Crystal Structure of Xenopus laevis APE2 Catalytic Domain 分子名称: 1,2-ETHANEDIOL, 1,4-BUTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... 著者 Wojtaszek, J.L, Wallace, B.D, Williams, R.S. 登録日 2020-03-30 公開日 2020-05-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease. Mol.Cell, 78, 2020
1UVH	X-ray structure of Dps from Mycobacterium smegmatis 分子名称: FE (III) ION, STARVATION-INDUCED DNA PROTECTING PROTEIN 著者 Ilari, A, Ceci, P, Falvo, E, Chiancone, E. 登録日 2004-01-20 公開日 2005-02-09 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Reassessment of Protein Stability, DNA Binding, and Protection of Mycobacterium Smegmatis Dps. J.Biol.Chem., 280, 2005
4DOG	Structures of Vaccinia Virus Uracil-DNA Glycosylase in New Crystal Forms 分子名称: 1,2-ETHANEDIOL, SULFATE ION, Uracil-DNA glycosylase 著者 Schormann, N, Chattopadhyay, D. 登録日 2012-02-09 公開日 2013-02-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Analysis of the Dimer Interface in Crystal Structures of Vaccinia Virus Uracil DNA Glycosylase To be Published
1P3G	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P3K	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
2HOS	Phage-Selected Homeodomain Bound to Unmodified DNA 分子名称: 3-METHYL-1,3-OXAZOLIDIN-2-ONE, 5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3', ... 著者 Shokat, K.M, Feldman, M.E, Simon, M.D. 登録日 2006-07-16 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and properties of a re-engineered homeodomain protein-DNA interface. Acs Chem.Biol., 1, 2006
6TAZ	Timeless couples G quadruplex detection with processing by DDX11 during DNA replication 分子名称: Protein timeless homolog 著者 Lerner Koch, L, Holzer, S, Kilkenny, M.L, Murat, P, Svikovic, S, Schiavone, D, Bittleston, A, Maman, J.D, Branzei, D, Stott, K, Pellegrini, L, Sale, E.J. 登録日 2019-10-31 公開日 2020-07-01 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Timeless couples G-quadruplex detection with processing by DDX11 helicase during DNA replication. Embo J., 39, 2020
6TOB	Structural and DNA Binding Properties of Mycobacterial Integration Host Factor mIHF 分子名称: Integration host factor MIHF 著者 Herrmann, T. 登録日 2019-12-11 公開日 2019-12-25 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural and DNA binding properties of mycobacterial integration host factor mIHF. J.Struct.Biol., 209, 2020
8PMC	transcription factor BARHL2 bound to TAATT DNA sequence 分子名称: BarH-like 2 homeobox protein, DNA 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2023-06-28 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 transcription factor BARHL2 bound to DNA sequences To Be Published
1JB8	The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation 分子名称: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' 著者 Han, G.W, Kopka, M.L, Langs, D, Dickerson, R.E. 登録日 2001-06-02 公開日 2003-07-01 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping Proc.Natl.Acad.Sci.USA, 100, 2003

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