PDB: 5515 件ウェブページステータス検索Chemie searchBIRD

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7UBC	Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in d6-DMSO with cis/trans switching 分子名称: Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE 著者 Ramelot, T.A, Tejero, R, Monteltione, G.T. 登録日 2022-03-14 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
7UBE	Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in d6-DMSO with cis/trans switching 分子名称: Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU 著者 Ramelot, T.A, Tejero, R, Montelione, G.T. 登録日 2022-03-14 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
7UBG	Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (A-TT conformation) 分子名称: Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE 著者 Ramelot, T.A, Tejero, R, Montelione, G.T. 登録日 2022-03-14 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
7UBH	Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in CDCl3 with cis/trans switching 分子名称: Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA 著者 Ramelot, T.A, Tejero, R, Montelione, G.T. 登録日 2022-03-14 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
6EGO	Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing an Ala Residue in the Second Coordination Sphere of the Hg(II)S3 Binding Site 分子名称: Hg(II)(GRAND CoilSerL12AL16C)3-, MERCURY (II) ION, ZINC ION 著者 Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. 登録日 2018-08-20 公開日 2019-04-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation. Chemistry, 25, 2019
6EGL	Crystal Structure of a de Novo Three-stranded Coiled Coil Peptide Containing a D-Leu in the Second Coordination Sphere of a Non-metalated Tris-thiolate Binding Site 分子名称: Apo-(GRAND CoilSerL12(DLE)L16C)3, POLYETHYLENE GLYCOL (N=34), ZINC ION 著者 Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. 登録日 2018-08-20 公開日 2019-04-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation. Chemistry, 25, 2019
1QCZ	CRYSTAL STRUCTURE OF E. COLI PURE, AN UNUSUAL MUTASE THAT CATALYZES THE CONVERSION OF N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE (N5-CAIR) TO 4-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE (CAIR) IN THE PURINE BIOSYNTHETIC PATHWAY 分子名称: N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE MUTASE 著者 Ealick, S.E, Mathews, I.I. 登録日 1999-05-10 公開日 1999-11-10 最終更新日 2018-01-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of Escherichia coli PurE, an unusual mutase in the purine biosynthetic pathway. Structure Fold.Des., 7, 1999
7BG1	Structure of anti-FLAG M2 Fab domain remodeled based on proteomic sequencing 分子名称: CHLORIDE ION, SULFATE ION, anti-FLAG M2 heavy chain, ... 著者 Pronker, M.F, Snijder, J. 登録日 2021-01-05 公開日 2021-07-21 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme. J.Proteome Res., 20, 2021
4F2V	Crystal Structure of de novo designed serine hydrolase, Northeast Structural Genomics Consortium (NESG) Target OR165 分子名称: DI(HYDROXYETHYL)ETHER, DODECYL-ALPHA-D-MALTOSIDE, De novo designed serine hydrolase 著者 Kuzin, A, Lew, S, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Rajagopalan, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-05-08 公開日 2012-05-30 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.493 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
8CTO	Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (B-CT conformation) 分子名称: Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA 著者 Ramelot, T.A, Tejero, R, Montelione, G.T. 登録日 2022-05-16 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
4J19	Structure of a novel telomere repeat binding protein bound to DNA 分子名称: CHLORIDE ION, DNA (5'-D(*CP*TP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*A)-3'), ... 著者 Kappei, D, Butter, F, Benda, C, Scheibe, M, Draskovic, I, Stevense, M, Lopes Novo, C, Basquin, C, Krastev, D.B, Kittler, R, Jessberger, R, Londono-Vallejo, A.J, Mann, M, Buchholz, F. 登録日 2013-02-01 公開日 2013-05-29 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment. Embo J., 32, 2013
8CUN	Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%) 分子名称: Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU 著者 Ramelot, T.A, Tejero, R, Montelione, G.T. 登録日 2022-05-17 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
8E1E	Scaffolding protein functional sites using deep learning 分子名称: SG122_C3 著者 Bera, A.K, Gerben, S, Baker, D. 登録日 2022-08-10 公開日 2023-08-16 実験手法 X-RAY DIFFRACTION (4.27 Å) 主引用文献 Design of Diverse Asymmetric Pockets in De Novo Homo-oligomeric Proteins. Biochemistry, 62, 2023
8CWA	Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TC conformation, 53%) 分子名称: Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU 著者 Ramelot, T.A, Tejero, R, Montelione, G.T. 登録日 2022-05-18 公開日 2022-09-14 最終更新日 2022-09-28 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
1OVU	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form I) 分子名称: COBALT (II) ION, four-helix bundle model di-Co(II)-DF1-L13A (form I) 著者 Di Costanzo, L, Geremia, S. 登録日 2003-03-27 公開日 2004-04-06 最終更新日 2019-11-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography. J.Am.Chem.Soc., 127, 2005
1OVR	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Mn(II)-DF1-L13 分子名称: MANGANESE (II) ION, four-helix bundle model di-Mn(II)-DF1-L13 著者 Di Costanzo, L, Geremia, S. 登録日 2003-03-27 公開日 2004-05-18 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography. J.Am.Chem.Soc., 127, 2005
3Q7W	Crystal structure of Symfoil-4P/PV1: de novo designed beta-trefoil architecture with symmetric primary structure, primitive version 1 分子名称: SULFATE ION, de novo designed beta-trefoil architecture with symmetric primary structure 著者 Blaber, M, Lee, J. 登録日 2011-01-05 公開日 2012-01-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein. Proc.Natl.Acad.Sci.USA, 110, 2013
3Q7X	Crystal structure of Symfoil-4P/PV1: de novo designed beta-trefoil architecture with symmetric primary structure, primitive version 1 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, de novo designed beta-trefoil architecture with symmetric primary structure 著者 Blaber, M, Lee, J. 登録日 2011-01-05 公開日 2012-01-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein. Proc.Natl.Acad.Sci.USA, 110, 2013
1OVV	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II) 分子名称: COBALT (II) ION, FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II) 著者 Di Costanzo, L, Geremia, S. 登録日 2003-03-27 公開日 2004-04-06 最終更新日 2019-11-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography. J.Am.Chem.Soc., 127, 2005
8P6I	Crystal structure of the 139H2 Fab fragment bound to Muc1 peptide epitope 分子名称: 139H2 HC, 139H2 LC, Mucin-1 著者 Beugelink, J.W, Peng, W, Siborova, M, Pronker, M.F, Snijder, J, Janssen, B.J.C. 登録日 2023-05-26 公開日 2024-04-03 最終更新日 2024-04-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Reverse-engineering the anti-MUC1 antibody 139H2 by mass spectrometry-based de novo sequencing. Life Sci Alliance, 7, 2024
2JGO	Structure of the arsenated de novo designed peptide Coil Ser L9C 分子名称: ARSENIC, COIL SER L9C, ZINC ION 著者 Touw, D.S, Nordman, C.E, Stuckey, J.A, Pecoraro, V.L. 登録日 2007-02-13 公開日 2007-07-10 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Identifying Important Structural Characteristics of Arsenic Resistance Proteins by Using Designed Three-Stranded Coiled Coils. Proc.Natl.Acad.Sci.USA, 104, 2007
4G4L	Crystal structure of the de novo designed peptide alpha4tbA6 分子名称: ACETYL GROUP, DI(HYDROXYETHYL)ETHER, HEXAETHYLENE GLYCOL, ... 著者 Buer, B.C, Meagher, J.L, Stuckey, J.A, Marsh, E.N.G. 登録日 2012-07-16 公開日 2012-10-31 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. Protein Sci., 21, 2012
4DRT	Three dimensional structure of de novo designed serine hydrolase OSH26, Northeast Structural Genomics Consortium (NESG) target OR89 分子名称: CHLORIDE ION, SODIUM ION, de novo designed serine hydrolase, ... 著者 Kuzin, A, Su, M, Rajagopalan, S, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-02-17 公開日 2012-04-18 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.002 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
6EGM	Crystal Structure of a de novo Three-stranded Coiled Coil Peptide Containing D-Leu in a d-site Position of a Tris-thiolate Binding Site 分子名称: Apo-(GRAND CoilSerL16CL19(DLE))3, ZINC ION 著者 Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. 登録日 2018-08-20 公開日 2019-04-03 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 How Outer Coordination Sphere Modifications Can Impact Metal Structures in Proteins: A Crystallographic Evaluation. Chemistry, 25, 2019
4GVW	Three-dimensional structure of the de novo designed serine hydrolase 2bfq_3, Northeast Structural Genomics Consortium (NESG) Target OR248 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETIC ACID, De novo designed serine hydrolase, ... 著者 Kuzin, A, Lew, S, Seetharaman, J, Rajagopalan, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-08-31 公開日 2012-09-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.113 Å) 主引用文献 Northeast Structural Genomics Consortium Target OR248 To be Published

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