PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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5QK2	PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z54628578 分子名称: 1,2-ETHANEDIOL, ADP-sugar pyrophosphatase, CHLORIDE ION, ... 著者 Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F. 登録日 2018-10-31 公開日 2018-12-19 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) To Be Published
7OUI	Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana (digitonin-extracted) 分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... 著者 Graca, A.T, Hall, M, Persson, K, Schroder, W.P. 登録日 2021-06-11 公開日 2021-08-18 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 High-resolution model of Arabidopsis Photosystem II reveals the structural consequences of digitonin-extraction. Sci Rep, 11, 2021
7OLC	Thermophilic eukaryotic 80S ribosome at idle POST state 分子名称: 18S rRNA, 26S rRNA, 40S ribosomal protein S0, ... 著者 Kisonaite, M, Wild, K, Sinning, I. 登録日 2021-05-19 公開日 2022-01-26 最終更新日 2022-04-06 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 High-resolution structures of a thermophilic eukaryotic 80S ribosome reveal atomistic details of translocation. Nat Commun, 13, 2022
1VP2	CRYSTAL STRUCTURE OF A PUTATIVE XANTHOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN HOMOLOG (TM0159) FROM THERMOTOGA MARITIMA AT 1.78 A RESOLUTION 分子名称: Putative Xanthosine triphosphate pyrophosphatase/HAM1 protein homolog, SULFATE ION 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-10-06 公開日 2004-10-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Crystal structure of Putative Xanthosine triphosphate pyrophosphatase1/HAM1 protein homolog (TM0159) from Thermotoga maritima at 1.78 A resolution To be published
7A09	Structure of a human ABCE1-bound 43S pre-initiation complex - State III 分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Kratzat, H, Mackens-Kiani, T, Ameismeier, A, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2020-08-07 公開日 2020-10-14 最終更新日 2021-01-13 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes. Embo J., 40, 2021
6Z6M	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6Z6N	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
5X6L	Crystal structure of Notothenia coriiceps adenylate kinase variant 分子名称: BIS(ADENOSINE)-5'-PENTAPHOSPHATE, SULFATE ION, adenylate kinase 著者 Bae, E, Moon, S, Kim, J. 登録日 2017-02-22 公開日 2018-02-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.862 Å) 主引用文献 TBD To Be Published
6U42	Natively decorated ciliary doublet microtubule 分子名称: DC1, DC2, DC3, ... 著者 Ma, M, Stoyanova, M, Rademacher, G, Dutcher, S.K, Brown, A, Zhang, R. 登録日 2019-08-22 公開日 2019-11-13 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of the Decorated Ciliary Doublet Microtubule. Cell, 179, 2019
5Y1U	Crystal structure of RBBP4 bound to AEBP2 RRK motif 分子名称: Histone-binding protein RBBP4, SULFATE ION, Zinc finger protein AEBP2 著者 Sun, A, Li, F, Wu, J, Shi, Y. 登録日 2017-07-21 公開日 2018-04-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.141 Å) 主引用文献 Structural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4 Protein Cell, 2017
8VG2	Cryo-EM structure of FoxA1 and GATA4 in complex with H14 chromatosome 分子名称: DNA (196-MER), Hepatocyte nuclear factor 3-alpha, Histone H1.4, ... 著者 Zhou, B.R, Bai, Y. 登録日 2023-12-22 公開日 2024-08-07 最終更新日 2025-06-04 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Cryo-EM structure of FoxA1 and GATA4 in complex with H14 chromatosome Mol.Cell, 2024
4DTA	Crystal Structure of F95M Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Adenosine 分子名称: ADENOSINE, APH(2'')-Id 著者 Shi, K, Berghuis, A.M. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
4DT8	Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Adenosine 分子名称: ADENOSINE, APH(2'')-Id, CHLORIDE ION 著者 Shi, K, Berghuis, A.M. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
4DT9	Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Guanosine 分子名称: APH(2'')-Id, GUANOSINE 著者 Shi, K, Berghuis, A.M. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
4DTB	Crystal Structure of F95Y Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Guanosine 分子名称: APH(2'')-Id, CHLORIDE ION, GUANOSINE 著者 Shi, K, Berghuis, A.M. 登録日 2012-02-20 公開日 2012-03-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases. J.Biol.Chem., 287, 2012
1F16	SOLUTION STRUCTURE OF A PRO-APOPTOTIC PROTEIN BAX 分子名称: PROTEIN (APOPTOSIS REGULATOR BAX, MEMBRANE ISOFORM ALPHA) 著者 Suzuki, M, Youle, R.J, Tjandra, N. 登録日 2000-05-18 公開日 2000-11-22 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of Bax: coregulation of dimer formation and intracellular localization. Cell(Cambridge,Mass.), 103, 2000
4V6A	Structure of EF-P bound to the 70S ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Stanley, R.E, Blaha, G. 登録日 2009-06-15 公開日 2014-07-09 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science, 325, 2009
4V83	Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
7QZJ	1.55 A X-ray crystallographic structure of SapH from Streptomyces sp. (HPH0547) involved in Pseudouridimycin biosynthesis 分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aspartate aminotransferase family protein, GLYCEROL, ... 著者 Schnell, R, Schneider, G. 登録日 2022-01-31 公開日 2023-02-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Pseudouridine-Modifying Enzymes SapB and SapH Control Entry into the Pseudouridimycin Biosynthetic Pathway. Acs Chem.Biol., 18, 2023
4V9A	Crystal Structure of the 70S ribosome with tetracycline. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Jenner, L, Yusupov, M, Yusupova, G. 登録日 2012-07-18 公開日 2014-07-09 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.2999 Å) 主引用文献 Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis. Proc.Natl.Acad.Sci.USA, 110, 2013
4W2E	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Lin, J, Steitz, T.A. 登録日 2014-06-04 公開日 2014-10-01 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of elongation factor 4 bound to a clockwise ratcheted ribosome. Science, 345, 2014
4V55	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-17 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
4V5K	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Ng, C.L, Lang, K, Meenan, N.A.G, Sharma, A, Kelley, A.C, Kleanthous, C, Ramakrishnan, V. 登録日 2010-05-29 公開日 2014-07-09 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural Basis for 16S Ribosomal RNA Cleavage by the Cytotoxic Domain of Colicin E3. Nat.Struct.Mol.Biol., 17, 2010
4V7Z	Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin. 分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Bulkley, D.P, Innis, C.A, Blaha, G, Steitz, T.A. 登録日 2010-08-18 公開日 2014-07-09 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Revisiting the structures of several antibiotics bound to the bacterial ribosome. Proc.Natl.Acad.Sci.USA, 107, 2010
4V8F	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2011-12-07 公開日 2014-07-09 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012

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