PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5DDY	Binary complex of human Polymerase lambda with dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, MAGNESIUM ION, ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-08-25 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.36 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
5D8F	crystal structure of SSB and ssDNA complex from homo sapiens 分子名称: DI(HYDROXYETHYL)ETHER, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), SOSS complex subunit B1 著者 Li, Y.H, Gao, Z.Q, Dong, Y.H. 登録日 2015-08-17 公開日 2016-08-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 crystal structure of SSB and ssDNA complex from homo sapiens To Be Published
2D55	Structural, physical and biological characteristics of RNA.DNA binding agent N8-actinomycin D 分子名称: ACTINOMYCIN D, DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') 著者 Shinomiya, M, Chu, W, Carlson, R.G, Weaver, R.F, Takusagawa, F. 登録日 1995-05-01 公開日 1995-10-15 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal Structure of the 2:1 Complex between D(Gaagcttc) and the Anticancer Drug Actinomycin D. J.Mol.Biol., 225, 1992
4BZU	The Solution Structure of the MLN 944-d(TATGCATA)2 Complex 分子名称: 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM, DNA 著者 Serobian, A, Thomas, D.S, Ball, G.E, Denny, W.A, Wakelin, L.P.G. 登録日 2013-07-30 公開日 2013-08-21 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Solution Structure of Bis(Phenazine-1-Carboxamide)-DNA Complexes: Mln 944 Binding Corrected and Extended. Biopolymers, 101, 2014
2RO4	RDC-refined Solution Structure of the N-terminal DNA Recognition Domain of the Bacillus subtilis Transition-state Regulator AbrB 分子名称: Transition state regulatory protein abrB 著者 Sullivan, D.M, Bobay, B.G, Kojetin, D.J, Thompson, R.J, Rance, M, Strauch, M.A, Cavanagh, J. 登録日 2008-03-08 公開日 2008-11-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Insights into the nature of DNA binding of AbrB-like transcription factors Structure, 16, 2008
5XSK	Crystal structure of PWWP-DNA complex for human hepatoma-derived growth factor 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(P*TP*GP*GP*TP*CP*TP*TP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*CP*AP*AP*GP*AP*CP*CP*A)-3'), ... 著者 Chen, L.Y, Huang, Y.C, Hsieh, Y.C, Lin, P.J, Chen, C.J. 登録日 2017-06-14 公開日 2018-06-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 Structure of PWWP-DNA complex at 2.84 Angstroms resolution To Be Published
2RO3	RDC-refined Solution Structure of the N-terminal DNA Recognition Domain of the Bacillus subtilis Transition-state Regulator Abh 分子名称: Putative transition state regulator abh 著者 Sullivan, D.M, Bobay, B.G, Douglas, K.J, Thompson, R.J, Rance, M, Strauch, M.A, Cavanagh, J. 登録日 2008-03-08 公開日 2008-11-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Insights into the nature of DNA binding of AbrB-like transcription factors Structure, 16, 2008
4LHF	Crystal structure of a DNA binding protein from phage P2 分子名称: Regulatory protein cox 著者 Berntsson, R.P.-A, Odegrip, R, Sehlen, W, Skaar, K, Svensson, L.M, Massad, T, Haggard-Ljungquist, E, Stenmark, P. 登録日 2013-07-01 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural insight into DNA binding and oligomerization of the multifunctional Cox protein of bacteriophage P2. Nucleic Acids Res., 42, 2014
6J4K	Structural basis for the target DNA recognition and binding by the MYB domain of phosphate starvation response 1 分子名称: GLYCEROL, MALONIC ACID, Protein PHOSPHATE STARVATION RESPONSE 1 著者 Jiang, M.Q, Sun, L.F. 登録日 2019-01-09 公開日 2019-04-24 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Structural basis for the Target DNA recognition and binding by the MYB domain of phosphate starvation response 1. Febs J., 286, 2019
2RO5	RDC-refined solution structure of the N-terminal DNA recognition domain of the Bacillus subtilis transition-state regulator SpoVT 分子名称: Stage V sporulation protein T 著者 Sullivan, D.M, Bobay, B.G, Kojetin, D.J, Thompson, R.J, Rance, M, Strauch, M.A, Cavanagh, J. 登録日 2008-03-08 公開日 2008-11-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Insights into the nature of DNA binding of AbrB-like transcription factors Structure, 16, 2008
6VAD	Fanconi Anemia ID complex 分子名称: Fanconi anemia group D2 protein, Fanconi anemia, complementation group I 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
8PM5	transcription factor BARHL2 bound to TAAAT DNA sequence 分子名称: BarH-like 2 homeobox protein, DNA (5'-D(*AP*AP*CP*CP*AP*TP*TP*TP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*AP*AP*AP*TP*GP*GP*TP*T)-3') 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2023-06-28 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 transcription factor BARHL2 bound to DNA sequences To Be Published
5J3E	Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA 分子名称: 5-methylcytosine containing DNA, Thymocyte nuclear protein 1, UNKNOWN ATOM OR ION 著者 Halabelian, L, Tempel, W, Li, Y, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Structural Genomics Consortium (SGC) 登録日 2016-03-30 公開日 2016-04-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA To be published
8UK4	Crystal structure of human polymerase eta with incoming dTMPnPP nucleotide opposite urea lesion 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(UD8)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Tomar, R, Egli, M, Stone, M.P. 登録日 2023-10-12 公開日 2024-03-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Replication Bypass of the N -(2-Deoxy-d-erythro-pentofuranosyl)-urea DNA Lesion by Human DNA Polymerase eta. Biochemistry, 63, 2024
8UJX	Crystal structure of human polymerase eta with incoming dGMPnPP nucleotide opposite urea lesion 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(UD8)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Tomar, R, Egli, M, Stone, M.P. 登録日 2023-10-11 公開日 2024-03-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Replication Bypass of the N -(2-Deoxy-d-erythro-pentofuranosyl)-urea DNA Lesion by Human DNA Polymerase eta. Biochemistry, 63, 2024
6VJI	Structure of mammalian NEIL2 from Monodelphis domestica 分子名称: Nei like DNA glycosylase 2, ZINC ION 著者 Eckenroth, B.E, Doublie, S. 登録日 2020-01-16 公開日 2020-08-12 最終更新日 2021-01-20 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Unique Structural Features of Mammalian NEIL2 DNA Glycosylase Prime Its Activity for Diverse DNA Substrates and Environments. Structure, 29, 2021
4QZB	Mouse Tdt in complex with a DSB substrate, C-T base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*T)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZF	Mouse Tdt, F401A mutant, in complex with a DSB substrate, C-A base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*A)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZ9	Mouse Tdt in complex with a DSB substrate, C-A base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*A)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZE	Mouse Tdt, F401A mutant, in complex with a DSB substrate, C-G base pair 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*GP*G)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
4QZI	Mouse Tdt, F401A mutant, in complex with a DSB substrate and Zn2+ 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 5'-D(*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*TP*TP*TP*TP*GP*GP*G)-3', ... 著者 Gouge, J, Delarue, M. 登録日 2014-07-27 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair. Embo J., 34, 2015
3CXM	Leishmania naiffi uracil-DNA glycosylase in complex with 5-bromouracil 分子名称: 5-bromopyrimidine-2,4(1H,3H)-dione, BROMIDE ION, GLYCEROL, ... 著者 Larson, E.T, Merritt, E.A, Structural Genomics of Pathogenic Protozoa Consortium (SGPP) 登録日 2008-04-24 公開日 2008-05-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structures of Leishmania naiffi uracil-DNA glycosylase in complex with several ligands identified with fragment cocktail crystallography. To be Published
4BZV	The Solution Structure of the MLN 944-d(TACGCGTA)2 complex 分子名称: 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM, DNA 著者 Serobian, A, Thomas, D.S, Ball, G.E, Denny, W.A, Wakelin, L.P.G. 登録日 2013-07-30 公開日 2013-08-21 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Solution Structure of Bis(Phenazine-1-Carboxamide)-DNA Complexes: Mln 944 Binding Corrected and Extended. Biopolymers, 101, 2014
4YOQ	Crystal Structure of MutY bound to its anti-substrate 分子名称: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(*T*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ... 著者 Wang, L, Lee, S, Verdine, G.L. 登録日 2015-03-11 公開日 2015-05-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase. J.Biol.Chem., 290, 2015
4YPH	Crystal Structure of MutY bound to its anti-substrate with the disulfide cross-linker reduced 分子名称: A/G-specific adenine glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(TP*GP*TP*CP*CP*AP*CP*GP*TP*CP*T)-3'), ... 著者 Wang, L, Lee, S, Verdine, G.L. 登録日 2015-03-12 公開日 2015-05-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase. J.Biol.Chem., 290, 2015

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