PDB: 125 件ウェブページステータス検索Chemie searchBIRD

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6DLK	Crystal structure of DNA polymerase III subunit beta from Rickettsia rickettsii 分子名称: 1,2-ETHANEDIOL, Beta sliding clamp 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-06-01 公開日 2018-10-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of DNA polymerase III subunit beta from Rickettsia rickettsii to be published
4TSZ	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand 分子名称: ACE-GLN-ALC-ASP-LEU-ZCL peptide, DNA polymerase III subunit beta 著者 Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. 登録日 2014-06-19 公開日 2014-09-10 最終更新日 2016-12-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
4TRT	Deinococcus radiodurans DNA polymerase III subunit beta 分子名称: DNA polymerase III subunit beta 著者 Niiranen, L, Lian, K, Johnson, K.A, Moe, E. 登録日 2014-06-17 公開日 2015-04-29 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of the DNA polymerase III beta subunit ( beta-clamp) from the extremophile Deinococcus radiodurans. Bmc Struct.Biol., 15, 2015
3D1F	Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide 分子名称: 2-[3,6-bis(dimethylamino)xanthen-9-yl]-5-methanoyl-benzoate, DI(HYDROXYETHYL)ETHER, DNA polymerase III subunit beta, ... 著者 Georgescu, R.E, Yurieva, O, Seung-Sup, K, Kuriyan, J, Kong, X.-P, O'Donnell, M. 登録日 2008-05-05 公開日 2008-07-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp. Proc.Natl.Acad.Sci.Usa, 105, 2008
2AVT	Crystal structure of the beta subunit from DNA polymerase of Streptococcus pyogenes 分子名称: DNA polymerase III beta subunit 著者 Argiriadi, M.A, Goedken, E.R, Bruck, I, O'donnell, M, Kuriyan, J. 登録日 2005-08-30 公開日 2006-01-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. Bmc Struct.Biol., 6, 2006
6D46	Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington 分子名称: Beta sliding clamp, CHLORIDE ION, TETRAETHYLENE GLYCOL 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-04-17 公開日 2018-05-02 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia typhi str. Wilmington To Be Published
4K3O	E. coli sliding clamp in complex with AcQADLF 分子名称: (ACE)QADLF, 1,2-ETHANEDIOL, CALCIUM ION, ... 著者 Yin, Z, Oakley, A.J. 登録日 2013-04-11 公開日 2013-05-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
1VPK	Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution 分子名称: DNA polymerase III, beta subunit 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-11-09 公開日 2004-11-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution To be published
6DJ8	Structure of DNA polymerase III subunit beta from Borrelia burgdorferi in complex with a natural product 分子名称: Beta sliding clamp, Natural product peptide 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-05-24 公開日 2019-05-29 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of DNA polymerase III subunit beta from Borrelia burgdorferi in complex with a natural product to be published
7AZK	DNA polymerase sliding clamp from Escherichia coli with peptide 35 bound 分子名称: Beta sliding clamp, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. 登録日 2020-11-16 公開日 2021-12-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
4RKI	Crystal structure of sliding beta clamp from Helicobacter pylori 分子名称: DNA polymerase III subunit beta 著者 Satyawali, P, Tarique, K.F, Abdul Rehman, S.A, Gourinath, S. 登録日 2014-10-13 公開日 2016-01-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural insight into beta-Clamp and its interaction with DNA Ligase in Helicobacter pylori. Sci Rep, 6, 2016
5FVE	Crystal Structure of Helicobacter pylori beta clamp in complex with 3, 4-Difluorobenzamide 分子名称: 3,4-difluorobenzamide, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-02-05 公開日 2017-02-22 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Screening of E. coli beta-clamp Inhibitors Revealed that Few Inhibit Helicobacter pylori More Effectively: Structural and Functional Characterization. Antibiotics (Basel), 7, 2018
6DLY	Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product 分子名称: 1,2-ETHANEDIOL, Beta sliding clamp, Natural product peptide 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-06-04 公開日 2019-06-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product to be published
5AH2	The sliding clamp of Mycobacterium smegmatis in complex with a natural product. 分子名称: DNA POLYMERASE III SUBUNIT BETA, GRISELIMYCIN, SODIUM ION 著者 Lukat, P, Kling, A, Heinz, D.W, Mueller, R. 登録日 2015-02-04 公開日 2015-06-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.129 Å) 主引用文献 Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins. Science, 348, 2015
7YBD	Crystal structure of sliding DNA clamp of Clostridioides difficile 分子名称: Beta sliding clamp, TRIETHYLENE GLYCOL 著者 Hishiki, A, Okazaki, S, Hara, K, Hashimoto, H. 登録日 2022-06-29 公開日 2022-10-19 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile. J.Biochem., 173, 2022
7RZM	Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a 分子名称: DNA polymerase III subunit beta 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-08-27 公開日 2021-10-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a To Be Published
4K3P	E. coli sliding clamp in complex with AcQLALF 分子名称: (ACE)QLALF, 1,2-ETHANEDIOL, CALCIUM ION, ... 著者 Yin, Z, Oakley, A.J. 登録日 2013-04-11 公開日 2013-05-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
5AGU	The sliding clamp of Mycobacterium tuberculosis in complex with a natural product. 分子名称: (R,R)-2,3-BUTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA POLYMERASE III SUBUNIT BETA, ... 著者 Lukat, P, Kling, A, Heinz, D.W, Mueller, R. 登録日 2015-02-03 公開日 2015-06-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.173 Å) 主引用文献 Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins. Science, 348, 2015
7AZD	DNA polymerase sliding clamp from Escherichia coli with peptide 20 bound 分子名称: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ... 著者 Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. 登録日 2020-11-16 公開日 2021-12-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
3PWE	Crystal structure of the E. coli beta clamp mutant R103C, I305C, C260S, C333S at 2.2A resolution 分子名称: DNA polymerase III subunit beta 著者 Marzahn, M.R, Robbins, A.H, McKenna, R, Bloom, L.B. 登録日 2010-12-08 公開日 2011-10-19 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.199 Å) 主引用文献 The E. coli clamp loader can actively pry open the beta-sliding clamp J.Biol.Chem., 286, 2011
6DM6	Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product 分子名称: Beta sliding clamp, Natural product peptide 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-06-04 公開日 2019-06-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product to be published
6E8E	Crystal structure of the Escherichia coli sliding clamp-MutL complex. 分子名称: Beta sliding clamp,DNA mismatch repair protein MutL, GLYCEROL, SULFATE ION 著者 Guarne, A, Almawi, A.W. 登録日 2018-07-28 公開日 2019-05-01 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Binding of the regulatory domain of MutL to the sliding beta-clamp is species specific. Nucleic Acids Res., 47, 2019
3T0P	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2011-07-20 公開日 2011-08-10 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution To be published
8CIZ	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Mycoplanecin A. 分子名称: Beta sliding clamp, Mycoplanecin A 著者 Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. 登録日 2023-02-11 公開日 2023-11-29 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024
5G48	H.pylori Beta clamp in complex with Diflunisal 分子名称: 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-05-06 公開日 2017-06-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Targeting the beta-clamp in Helicobacter pylori with FDA-approved drugs reveals micromolar inhibition by diflunisal. FEBS Lett., 591, 2017

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