PDB: 462 件ウェブページステータス検索Chemie searchBIRD

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4R71	Structure of the Qbeta holoenzyme complex in the P1211 crystal form 分子名称: 30S ribosomal protein S1, Elongation factor Ts, Elongation factor Tu, ... 著者 Gytz, H, Seweryn, P, Kutlubaeva, Z, Chetverin, A.B, Brodersen, D.E, Knudsen, C.R. 登録日 2014-08-26 公開日 2015-09-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.21 Å) 主引用文献 Structural basis for RNA-genome recognition during bacteriophage Q beta replication. Nucleic Acids Res., 43, 2015
3FKI	12-Subunit RNA Polymerase II Refined with Zn-SAD data 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Meyer, P.A, Ye, P, Suh, M.H, Zhang, M, Fu, J. 登録日 2008-12-16 公開日 2009-03-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.88 Å) 主引用文献 Structure of the 12-Subunit RNA Polymerase II Refined with the Aid of Anomalous Diffraction Data J.Biol.Chem., 284, 2009
3V11	Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA 分子名称: Initiator tRNA, MAGNESIUM ION, METHIONINE, ... 著者 Mechulam, Y, Schmitt, E. 登録日 2011-12-09 公開日 2012-03-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (5 Å) 主引用文献 Structure of the ternary initiation complex aIF2-GDPNP-methionylated initiator tRNA. Nat.Struct.Mol.Biol., 19, 2012
7LBM	Structure of the human Mediator-bound transcription pre-initiation complex 分子名称: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... 著者 Abdella, R, Talyzina, A, He, Y. 登録日 2021-01-08 公開日 2021-03-24 最終更新日 2021-04-14 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Structure of the human Mediator-bound transcription preinitiation complex. Science, 372, 2021
4V1N	Architecture of the RNA polymerase II-Mediator core transcription initiation complex 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. 登録日 2014-09-29 公開日 2015-02-04 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (7.8 Å) 主引用文献 Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
4V1O	Architecture of the RNA polymerase II-Mediator core transcription initiation complex 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. 登録日 2014-09-29 公開日 2015-02-04 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (9.7 Å) 主引用文献 Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
5MS0	pseudo-atomic model of the RNA polymerase lambda-based antitermination complex solved by cryo-EM 分子名称: 30S ribosomal protein S10, Antitermination protein N, DNA-directed RNA polymerase subunit alpha, ... 著者 Said, N, Krupp, F. 登録日 2016-12-29 公開日 2017-05-03 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (9.8 Å) 主引用文献 Structural basis for lambda N-dependent processive transcription antitermination. Nat Microbiol, 2, 2017
5FZ5	Transcription initiation complex structures elucidate DNA opening (CC) 分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... 著者 Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. 登録日 2016-03-10 公開日 2016-05-18 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.8 Å) 主引用文献 Transcription Initiation Complex Structures Elucidate DNA Opening Nature, 533, 2016
5MQF	Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ATP-dependent RNA helicase DHX8, Cell division cycle 5-like protein, ... 著者 Bertram, K, Hartmuth, K, Kastner, B. 登録日 2016-12-20 公開日 2017-03-22 最終更新日 2018-11-21 実験手法 ELECTRON MICROSCOPY (5.9 Å) 主引用文献 Cryo-EM structure of a human spliceosome activated for step 2 of splicing. Nature, 542, 2017
5FMF	the P-lobe of RNA polymerase II pre-initiation complex 分子名称: DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ... 著者 Murakami, K, Tsai, K, Kalisman, N, Bushnell, D.A, Asturias, F.J, Kornberg, R.D. 登録日 2015-11-03 公開日 2015-11-25 最終更新日 2017-07-12 実験手法 ELECTRON MICROSCOPY (6 Å) 主引用文献 Structure of an RNA Polymerase II Pre-Initiation Complex Proc.Natl.Acad.Sci.USA, 112, 2015
1E3H	SeMet derivative of Streptomyces antibioticus PNPase/GPSI enzyme 分子名称: GUANOSINE PENTAPHOSPHATE SYNTHETASE, SULFATE ION 著者 Symmons, M.F, Jones, G.H, Luisi, B.F. 登録日 2000-06-15 公開日 2000-11-05 最終更新日 2019-11-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A Duplicated Fold is the Structural Basis for Polynucleotide Phosphorylase Catalytic Activity, Processivity, and Regulation Structure, 8, 2000
2WB1	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase 分子名称: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... 著者 Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. 登録日 2009-02-19 公開日 2009-05-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.52 Å) 主引用文献 Evolution of Complex RNA Polymerase: The Complete Archaeal RNA Polymerase Structure Plos Biol., 7, 2009
1E3P	tungstate derivative of Streptomyces antibioticus PNPase/GPSI enzyme 分子名称: Polyribonucleotide nucleotidyltransferase, SULFATE ION, TUNGSTATE(VI)ION 著者 Symmons, M.F, Jones, G.H, Luisi, B.F. 登録日 2000-06-20 公開日 2000-11-03 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A Duplicated Fold is the Structural Basis for Polynucleotide Phosphorylase Catalytic Activity, Processivity, and Regulation Structure, 8, 2000
2Y0S	Crystal structure of Sulfolobus shibatae RNA polymerase in P21 space group 分子名称: DNA-DIRECTED RNA POLYMERASE, DNA-DIRECTED RNA POLYMERASE SUBUNIT A'', DNA-DIRECTED RNA POLYMERASE SUBUNIT D, ... 著者 Wojtas, M, Peralta, B, Ondiviela, M, Mogni, M, Bell, S.D, Abrescia, N.G.A. 登録日 2010-12-07 公開日 2011-02-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit. Biochem. Soc. Trans., 39, 2011
8WI7	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Kumar, N, Sharma, S, Kaushal, P.S. 登録日 2023-09-24 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
8W8F	human co-transcriptional RNA capping enzyme RNGTT-CMTR1 分子名称: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1, DNA (36-MER), DNA (45-MER), ... 著者 Li, Y, Wang, Q, Xu, Y, Li, Z. 登録日 2023-09-02 公開日 2024-04-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structures of co-transcriptional RNA capping enzymes on paused transcription complex. Nat Commun, 15, 2024
6SWC	IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi 分子名称: 16S ribosomal rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Coureux, P.-D, Mechulam, Y, Schmitt, E. 登録日 2019-09-20 公開日 2020-02-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation. Commun Biol, 3, 2020
8W8E	human co-transcriptional RNA capping enzyme RNGTT 分子名称: DNA (36-MER), DNA (45-MER), DNA-directed RNA polymerase II subunit E, ... 著者 Li, Y, Wang, Q, Xu, Y, Li, Z. 登録日 2023-09-02 公開日 2024-04-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structures of co-transcriptional RNA capping enzymes on paused transcription complex. Nat Commun, 15, 2024
2WAQ	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase 分子名称: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... 著者 Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. 登録日 2009-02-11 公開日 2009-05-19 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure. Plos Biol., 7, 2009
6SW9	IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Coureux, P.-D, Mechulam, Y, Schmitt, E. 登録日 2019-09-20 公開日 2020-02-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation. Commun Biol, 3, 2020
6Z9T	Transcription termination intermediate complex 5 分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... 著者 Said, N, Hilal, T, Loll, B, Wahl, M.C. 登録日 2020-06-04 公開日 2020-11-04 最終更新日 2021-02-03 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase rho. Science, 371, 2021
6Z9P	Transcription termination intermediate complex 1 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... 著者 Said, N, Hilal, T, Loll, B, Wahl, M.C. 登録日 2020-06-04 公開日 2020-11-04 最終更新日 2021-02-03 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase rho. Science, 371, 2021
6DRD	RNA Pol II(G) 分子名称: DNA-directed RNA polymerase II subunit GRINL1A, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ... 著者 Yu, X, Jishage, M, Shi, Y, Ganesan, S, Sali, A, Chait, B.T, Asturias, F, Roeder, R.G. 登録日 2018-06-11 公開日 2019-06-12 最終更新日 2019-12-04 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1. Nat. Struct. Mol. Biol., 25, 2018
6TED	Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elongation activation by RTF1 分子名称: DNA (37-MER), DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase subunit, ... 著者 Vos, S.M, Farnung, L, Cramer, P. 登録日 2019-11-11 公開日 2020-07-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation. Nat.Struct.Mol.Biol., 27, 2020
6Z9Q	Transcription termination intermediate complex 2 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase subunit alpha, ... 著者 Said, N, Hilal, T, Loll, B, Wahl, M.C. 登録日 2020-06-04 公開日 2020-11-04 最終更新日 2021-02-03 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase rho. Science, 371, 2021

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