PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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6L6S	The structure of the UdgX mutant H109E crosslinked to single-stranded DNA 分子名称: DNA (5'-D(P*TP*GP*(ORP)P*AP*GP*GP*CP*AP*TP*GP*C)-3'), IRON/SULFUR CLUSTER, Phage SPO1 DNA polymerase-related protein 著者 Xie, W, Tu, J, Zeng, H. 登録日 2019-10-29 公開日 2020-11-04 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.06425953 Å) 主引用文献 Structural insights into an MsmUdgX mutant capable of both crosslinking and uracil excision capability. DNA Repair (Amst), 97, 2021
3R8F	Replication initiator DnaA bound to AMPPCP and single-stranded DNA 分子名称: 5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3', Chromosomal replication initiator protein dnaA, MAGNESIUM ION, ... 著者 Duderstadt, K.E, Chuang, K, Berger, J.M. 登録日 2011-03-23 公開日 2011-09-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.366 Å) 主引用文献 DNA stretching by bacterial initiators promotes replication origin opening. Nature, 478, 2011
3H4L	Crystal Structure of N terminal domain of a DNA repair protein 分子名称: DNA mismatch repair protein PMS1, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Arana, M.E, Holmes, S.F, Fortune, J.M, Moon, A.F, Pedersen, L.C, Kunkel, T.A. 登録日 2009-04-20 公開日 2010-03-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Functional residues on the surface of the N-terminal domain of yeast Pms1. Dna Repair, 9, 2010
2LIB	DNA sequence context conceals alpha anomeric lesion 分子名称: DNA (5'-D(*CP*GP*TP*CP*CP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*(A3A)P*GP*GP*AP*CP*G)-3') 著者 Johnson, C.N, Spring, A.M, Cunningham, R.P, Germann, M.W. 登録日 2011-08-27 公開日 2012-08-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA sequence context conceals alpha-anomeric lesions. J.Mol.Biol., 416, 2012
1DKY	THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS 分子名称: DNAK, PEPTIDE SUBSTRATE 著者 Zhu, X, Zhao, X, Burkholder, W.F, Gragerov, A, Ogata, C.M, Gottesman, M.E, Hendrickson, W.A. 登録日 1996-06-03 公開日 1996-12-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural analysis of substrate binding by the molecular chaperone DnaK. Science, 272, 1996
9DNA	CRYSTAL STRUCTURE ANALYSIS OF AN A-DNA FRAGMENT AT 1.8 ANGSTROMS RESOLUTION. D(GCCCGGGC) 分子名称: DNA (5'-D(*GP*CP*CP*CP*GP*GP*GP*C)-3') 著者 Heinemann, U. 登録日 1987-07-10 公開日 1988-01-16 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure analysis of an A-DNA fragment at 1.8 A resolution: d(GCCCGGGC). Nucleic Acids Res., 15, 1987
1XBL	NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES 分子名称: DNAJ 著者 Pellecchia, M, Szyperski, T, Wall, D, Georgopoulos, C, Wuthrich, K. 登録日 1996-10-07 公開日 1997-01-11 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR structure of the J-domain and the Gly/Phe-rich region of the Escherichia coli DnaJ chaperone. J.Mol.Biol., 260, 1996
2BPR	NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, 25 STRUCTURES 分子名称: DNAK 著者 Wang, H, Kurochkin, A.V, Pang, Y, Hu, W, Flynn, G.C, Zuiderweg, E.R.P. 登録日 1998-08-11 公開日 1999-03-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction. Biochemistry, 37, 1998
1BQZ	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-78) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES 分子名称: DNAJ 著者 Huang, K, Flanagan, J.M, Prestegard, J.H. 登録日 1998-08-20 公開日 1999-06-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The influence of C-terminal extension on the structure of the "J-domain" in E. coli DnaJ. Protein Sci., 8, 1999
1BQ0	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES 分子名称: DNAJ 著者 Huang, K, Flanagan, J.M, Prestegard, J.H. 登録日 1998-08-20 公開日 1999-06-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The influence of C-terminal extension on the structure of the "J-domain" in E. coli DnaJ. Protein Sci., 8, 1999
1DG4	NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK IN THE APO FORM 分子名称: DNAK 著者 Pellecchia, M, Montgomery, D.L, Stevens, S.Y, Van der Kooi, C.W, Feng, H, Gierasch, L.M, Zuiderweg, E.R.P. 登録日 1999-11-23 公開日 1999-12-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural insights into substrate binding by the molecular chaperone DnaK. Nat.Struct.Biol., 7, 2000
1BPR	NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, MINIMIZED AVERAGE STRUCTURE 分子名称: DNAK 著者 Wang, H, Kurochkin, A.V, Pang, Y, Hu, W, Flynn, G.C, Zuiderweg, E.R.P. 登録日 1998-08-11 公開日 1999-03-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction. Biochemistry, 37, 1998
8CEF	Asymmetric Dimerization in a Transcription Factor Superfamily is Promoted by Allosteric Interactions with DNA 分子名称: DNA (26-MER), Nuclear receptor DNA binding domain, ZINC ION 著者 Patel, A.K.M, Shaik, T.B, McEwen, A.G, Moras, D, Klaholz, B.P, Billas, I.M.L. 登録日 2023-02-01 公開日 2023-08-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.486 Å) 主引用文献 Asymmetric dimerization in a transcription factor superfamily is promoted by allosteric interactions with DNA. Nucleic Acids Res., 51, 2023
2DZ7	DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC) 分子名称: DNA (5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3'), MAGNESIUM ION 著者 Sato, Y, Mitomi, K, Sumani, T, Kondo, J, Takenaka, A. 登録日 2006-09-21 公開日 2007-08-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 DNA octaplex formation with an I-motif of water-mediated A-quartets: reinterpretation of the crystal structure of d(GCGAAAGC) J.Biochem.(Tokyo), 140, 2006
5T4I	A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme 分子名称: DNA (5'-D(*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), MANGANESE (II) ION, ... 著者 Szymanski, M.R, Yin, W.Y. 登録日 2016-08-29 公開日 2017-05-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.389 Å) 主引用文献 A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease. Nat Commun, 8, 2017
5T5C	A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme 分子名称: DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), MAGNESIUM ION, ... 著者 Szymanski, M.R, Yin, W.Y. 登録日 2016-08-30 公開日 2017-05-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.851 Å) 主引用文献 A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease. Nat Commun, 8, 2017
6PH5	Binary product complex crystal structure of DNA polymerase Beta with an extra-helical template base 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2019-06-25 公開日 2019-12-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.602 Å) 主引用文献 DNA polymerase beta nucleotide-stabilized template misalignment fidelity depends on local sequence context. J.Biol.Chem., 295, 2020
7PU7	DNA polymerase from M. tuberculosis 分子名称: DNA polymerase III subunit alpha, Template, ZINC ION, ... 著者 Borsellini, A, Lamers, M.H. 登録日 2021-09-28 公開日 2022-02-23 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 DNA-Dependent Binding of Nargenicin to DnaE1 Inhibits Replication in Mycobacterium tuberculosis. Acs Infect Dis., 8, 2022
7XV8	Crystal structure of the Human TR4 DNA-Binding Domain Homodimer Bound to DR1 Response Element 分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), Nuclear receptor subfamily 2 group C member 2, ... 著者 Liu, Y, Chen, Z. 登録日 2022-05-21 公開日 2022-12-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.199 Å) 主引用文献 Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation. Nucleic Acids Res., 51, 2023
7XV6	Crystal structure of the Human TR4 DNA-Binding Domain with C-terminal extension (DBD-CTE) Homodimer Bound to DR1 Response Element 分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), NR2C2 protein, ... 著者 Liu, Y, Chen, Z. 登録日 2022-05-21 公開日 2022-12-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation. Nucleic Acids Res., 51, 2023
4HC9	DNA binding by GATA transcription factor-complex 3 分子名称: DNA (5'-D(*AP*AP*GP*GP*TP*TP*AP*TP*CP*TP*CP*TP*GP*AP*TP*TP*TP*AP*GP*G)-3'), DNA (5'-D(*TP*TP*CP*CP*TP*AP*AP*AP*TP*CP*AP*GP*AP*GP*AP*TP*AP*AP*CP*C)-3'), Trans-acting T-cell-specific transcription factor GATA-3, ... 著者 Chen, Y, Bates, D.L, Dey, R, Chen, L. 登録日 2012-09-28 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation. Cell Rep, 2, 2012
6LWA	Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing 5-hydroxyuracil (5-OHU) 分子名称: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(OHU)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1 著者 Liu, M.H, Zhang, J, Zhu, C.X, Zhang, X.X, Gao, Y.Q, Yi, C.Q. 登録日 2020-02-07 公開日 2021-06-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nat Commun, 12, 2021
6LWF	Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing guanidinohydantoin (Gh) 分子名称: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(DGH)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1 著者 Liu, M.H, Zhang, J, Zhu, C.X, Zhang, X.X, Gao, Y.Q, Yi, C.Q. 登録日 2020-02-07 公開日 2021-06-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nat Commun, 12, 2021
6LWC	Crystal structure of human NEIL1(P2G, E3Q, K242) bound to duplex DNA containing spiroiminodihydantoin (Sp) 分子名称: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(DSP)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1 著者 Liu, M.H, Zhang, J, Zhu, C.X, Zhang, X.X, Gao, Y.Q, Yi, C.Q. 登録日 2020-02-07 公開日 2021-06-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nat Commun, 12, 2021
6LWG	Crystal structure of human NEIL1(P2G, E3Q, R242) bound to duplex DNA containing guanidinohydantoin (Gh) 分子名称: DNA (5'-D(*CP*GP*TP*CP*CP*AP*(DGH)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1, ... 著者 Liu, M.H, Zhang, J, Zhu, C.X, Zhang, X.X, Gao, Y.Q, Yi, C.Q. 登録日 2020-02-07 公開日 2021-06-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.53 Å) 主引用文献 DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nat Commun, 12, 2021

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