2V79
Crystal Structure of the N-terminal domain of DnaD from Bacillus Subtilis
Summary for 2V79
| Entry DOI | 10.2210/pdb2v79/pdb |
| Descriptor | DNA REPLICATION PROTEIN DNAD, SODIUM ION, CHLORIDE ION, ... (4 entities in total) |
| Functional Keywords | primosome, dna-binding protein, dna binding protein |
| Biological source | BACILLUS SUBTILIS |
| Total number of polymer chains | 2 |
| Total formula weight | 32617.75 |
| Authors | Schneider, S.,Zhang, W.,Soultanas, P.,Paoli, M. (deposition date: 2007-07-27, release date: 2008-01-15, Last modification date: 2024-05-08) |
| Primary citation | Schneider, S.,Zhang, W.,Soultanas, P.,Paoli, M. Structure of the N-Terminal Oligomerization Domain of Dnad Reveals a Unique Tetramerization Motif and Provides Insights Into Scaffold Formation. J.Mol.Biol., 376:1237-, 2008 Cited by PubMed Abstract: DnaD is a primosomal protein that remodels supercoiled plasmids. It binds to supercoiled forms and converts them to open forms without nicking. During this remodeling process, all the writhe is converted to twist and the plasmids are held around the periphery of large scaffolds made up of DnaD molecules. This DNA-remodeling function is the sum of a scaffold-forming activity on the N-terminal domain and a DNA-dependent oligomerization activity on the C-terminal domain. We have determined the crystal structure of the scaffold-forming N-terminal domain, which reveals a winged-helix architecture, with additional structural elements extending from both N- and C-termini. Four monomers form dimers that join into a tetramer. The N-terminal extension mediates dimerization and tetramerization, with extensive interactions and distinct interfaces. The wings and helices of the winged-helix domains remain exposed on the surface of the tetramer. Structure-guided mutagenesis and atomic force microscopy imaging indicate that these elements, together with the C-terminal extension, are involved in scaffold formation. Based upon our data, we propose a model for the DnaD-mediated scaffold formation. PubMed: 18206906DOI: 10.1016/J.JMB.2007.12.045 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2 Å) |
Structure validation
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