Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2P9H
DownloadVisualize
BU of 2p9h by Molmil
High resolution structure of the Lactose Repressor bound to IPTG
分子名称: 1-methylethyl 1-thio-beta-D-galactopyranoside, Lactose operon repressor
著者Daber, R.
登録日2007-03-26
公開日2007-06-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural analysis of lac repressor bound to allosteric effectors.
J.Mol.Biol., 370, 2007
1MKC
DownloadVisualize
BU of 1mkc by Molmil
C-TERMINAL DOMAIN OF MIDKINE
分子名称: PROTEIN (MIDKINE)
著者Iwasaki, W, Nagata, K, Hatanaka, H, Ogura, K, Inui, T, Kimura, T, Muramatsu, T, Yoshida, K, Tasumi, M, Inagaki, F.
登録日1999-03-16
公開日1999-03-23
最終更新日2024-11-06
実験手法SOLUTION NMR
主引用文献Solution structure of midkine, a new heparin-binding growth factor.
EMBO J., 16, 1997
1MKH
DownloadVisualize
BU of 1mkh by Molmil
C-terminal domain of methionyl-tRNA synthetase from Pyrococcus abyssi
分子名称: C-terminal domain of Methionyl-tRNA synthetase
著者Crepin, T, Schmitt, E, Blanquet, S, Mechulam, Y.
登録日2002-08-29
公開日2003-02-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structure and function of the C-terminal domain of methionyl-tRNA synthetase
Biochemistry, 41, 2002
9GFQ
DownloadVisualize
BU of 9gfq by Molmil
Structure of PRD1 SSB P12
分子名称: Single-stranded DNA-binding protein
著者Traeger, L.K, Huguenin-Dezot, N.
登録日2024-08-12
公開日2025-04-09
最終更新日2025-04-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for cooperative ssDNA binding by bacteriophage protein filament P12.
Nucleic Acids Res., 53, 2025
1ML2
DownloadVisualize
BU of 1ml2 by Molmil
Crystal Structure of a Mutant Variant of Cytochrome c Peroxidase with Zn(II)-(20-oxo-Protoporphyrin IX)
分子名称: 20-OXO-PROTOPORPHYRIN IX CONTAINING ZN(II), Cytochrome c Peroxidase
著者Bhaskar, B, Immoos, C.E, Shimizu, H, Farmer, P.J, Poulos, T.L.
登録日2002-08-29
公開日2003-04-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献A Novel Heme and Peroxide-Dependent Tryptophan-Tyrosine Cross-Link in a Mutant of Cytochrome c Peroxidase
J.Mol.Biol., 328, 2003
7RPG
DownloadVisualize
BU of 7rpg by Molmil
X-ray crystal structure of OXA-24/40 K84D in complex with cefotaxime
分子名称: Beta-lactamase, CEFOTAXIME, C3' cleaved, ...
著者Powers, R.A, Mitchell, J.M, June, C.M.
登録日2021-08-03
公開日2022-07-06
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
1LWG
DownloadVisualize
BU of 1lwg by Molmil
Multiple Methionine Substitutions are Tolerated in T4 Lysozyme and have Coupled Effects on Folding and Stability
分子名称: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, Lysozyme, ...
著者Gassner, N.C, Baase, W.A, Mooers, B.H.M, Busam, R.D, Weaver, L.H, Lindstrom, J.D, Quillin, M.L, Matthews, B.M.
登録日2002-05-31
公開日2003-05-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Multiple methionine substitutions are tolerated in T4 lysozyme and have coupled effects on folding and stability.
Biophys.Chem., 100, 2003
9G7F
DownloadVisualize
BU of 9g7f by Molmil
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
分子名称: Acetoin utilization protein AcuA, Acetyl-coenzyme A synthetase
著者Zheng, L.J, Du, Y, Bange, G.
登録日2024-07-20
公開日2025-04-16
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Regulation of acetyl-CoA biosynthesis via an intertwined acetyl-CoA synthetase/acetyltransferase complex.
Nat Commun, 16, 2025
7RPF
DownloadVisualize
BU of 7rpf by Molmil
X-ray crystal structure of OXA-24/40 in complex with doripenem
分子名称: (2S,3R,4S)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, (4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, ...
著者Powers, R.A, Mitchell, J.M, June, C.M.
登録日2021-08-03
公開日2022-07-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
1LXG
DownloadVisualize
BU of 1lxg by Molmil
Solution structure of alpha-cobratoxin complexed with a cognate peptide (structure ensemble)
分子名称: Acetylcholine receptor protein, alpha chain, Long neurotoxin 1
著者Zeng, H, Hawrot, E.
登録日2002-06-05
公開日2002-11-20
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献NMR-based Binding Screen and Structural Analysis of the Complex Formed between alpha-Cobratoxin and an 18-mer Cognate Peptide Derived from the alpha1 Subunit of the Nicotinic Acetylcholine Receptor from Torpedo californica
J.Biol.Chem., 277, 2002
1MM3
DownloadVisualize
BU of 1mm3 by Molmil
Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF
分子名称: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION
著者Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
登録日2002-09-02
公開日2003-07-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Engineering a Protein Scaffold from a PHD Finger
structure, 11, 2003
7RMU
DownloadVisualize
BU of 7rmu by Molmil
Structure of Thermomonospora curvata heme-containing DyP-type peroxidase with a modified axial ligand
分子名称: DyP-type Peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Khadka, S, Li, P, Geisbrecht, B.V.
登録日2021-07-28
公開日2022-08-31
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of Thermomonospora curvata heme-containing DyP-type peroxidase with a modified axial ligand
To Be Published
1LYO
DownloadVisualize
BU of 1lyo by Molmil
CROSS-LINKED LYSOZYME CRYSTAL IN NEAT WATER
分子名称: LYSOZYME
著者Huang, Q, Wang, Z, Zhu, G, Qian, M, Shao, M, Jia, Y, Tang, Y.
登録日1998-03-05
公開日1998-05-27
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献X-ray studies on cross-linked lysozyme crystals in acetonitrile-water mixture.
Biochim.Biophys.Acta, 1384, 1998
1LYV
DownloadVisualize
BU of 1lyv by Molmil
High-resolution structure of the catalytically inactive yersinia tyrosine phosphatase C403A mutant in complex with phosphate.
分子名称: CHLORIDE ION, PHOSPHATE ION, PROTEIN-TYROSINE PHOSPHATASE YOPH
著者Evdokimov, A.G, Waugh, D.S, Routzahn, K, Tropea, J, Cherry, S.
登録日2002-06-08
公開日2002-07-03
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.363 Å)
主引用文献High-resolution structure of the catalytically inactive yersinia tyrosine phosphatase C403A mutant in complex with phosphate.
To be Published
9G08
DownloadVisualize
BU of 9g08 by Molmil
Structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
分子名称: ADENOSINE-5'-TRIPHOSPHATE, E3 ubiquitin-protein ligase IpaH1.4, E3 ubiquitin-protein ligase RNF213, ...
著者Naydenova, K, Randow, F.
登録日2024-07-07
公開日2025-04-16
最終更新日2025-10-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213.
Nat.Struct.Mol.Biol., 32, 2025
1LZN
DownloadVisualize
BU of 1lzn by Molmil
NEUTRON STRUCTURE OF HEN EGG-WHITE LYSOZYME
分子名称: NITRATE ION, PROTEIN (LYSOZYME), SODIUM ION
著者Bon, C.I, Lehmann, M.S, Wilkinson, C.
登録日1999-03-23
公開日1999-04-01
最終更新日2024-11-13
実験手法NEUTRON DIFFRACTION (1.7 Å)
主引用文献Quasi-Laue neutron-diffraction study of the water arrangement in crystals of triclinic hen egg-white lysozyme.
Acta Crystallogr.,Sect.D, 55, 1999
7RPE
DownloadVisualize
BU of 7rpe by Molmil
X-ray crystal structure of OXA-24/40 in complex with ertapenem
分子名称: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase, ...
著者Powers, R.A, Mitchell, J.M, June, C.M.
登録日2021-08-03
公開日2022-07-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
1M0N
DownloadVisualize
BU of 1m0n by Molmil
Structure of Dialkylglycine Decarboxylase Complexed with 1-Aminocyclopentanephosphonate
分子名称: 1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]CYCLOPENTYLPHOSPHONIC ACID, 2,2-Dialkylglycine decarboxylase, POTASSIUM ION, ...
著者Liu, W, Rogers, C.J, Fisher, A.J, Toney, M.D.
登録日2002-06-13
公開日2002-10-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Aminophosphonate Inhibitors of Dialkylglycine Decarboxylase: Structural Basis for Slow Binding Inhibition
Biochemistry, 41, 2002
7RPD
DownloadVisualize
BU of 7rpd by Molmil
X-ray crystal structure of OXA-24/40 V130D in complex with ertapenem
分子名称: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase, ...
著者Powers, R.A, Mitchell, J.M, June, C.M.
登録日2021-08-03
公開日2022-07-06
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022
1MNN
DownloadVisualize
BU of 1mnn by Molmil
Structure of the sporulation specific transcription factor Ndt80 bound to DNA
分子名称: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*AP*AP*AP*C)-3', NDT80 protein
著者Lamoureux, J.S, Stuart, D, Tsang, R, Wu, C, Glover, J.N.
登録日2002-09-05
公開日2002-11-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of the sporulation-specific transcription factor Ndt80 bound to DNA
Embo J., 21, 2002
2PEC
DownloadVisualize
BU of 2pec by Molmil
THE REFINED THREE-DIMENSIONAL STRUCTURE OF PECTATE LYASE C FROM ERWINIA CHRYSANTHEMI AT 2.2 ANGSTROMS RESOLUTION: IMPLICATIONS FOR AN ENZYMATIC MECHANISM
分子名称: PECTATE LYASE C
著者Yoder, M.D, Jurnak, F.
登録日1994-08-08
公開日1995-02-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Protein motifs. 3. The parallel beta helix and other coiled folds.
FASEB J., 9, 1995
1MO7
DownloadVisualize
BU of 1mo7 by Molmil
ATPase
分子名称: Sodium/Potassium-transporting ATPase alpha-1 chain
著者Hilge, M, Siegal, G, Vuister, G.W, Guentert, P, Gloor, S.M, Abrahams, J.P.
登録日2002-09-08
公開日2003-06-03
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase
Nat.Struct.Biol., 10, 2003
7R69
DownloadVisualize
BU of 7r69 by Molmil
Crystal structure of mutant R43D/C273S of L-Asparaginase I from Yersinia pestis
分子名称: 1,2-ETHANEDIOL, L-asparaginase I
著者Strzelczyk, P, Wlodawer, A, Lubkowski, J.
登録日2021-06-22
公開日2022-07-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The dimeric form of bacterial l-asparaginase YpAI is fully active.
Febs J., 290, 2023
1M2F
DownloadVisualize
BU of 1m2f by Molmil
Solution structure of the N-terminal domain of Synechococcus elongatus KaiA (KaiA135N); Family of 25 structures
分子名称: KaiA
著者Williams, S.B, Vakonakis, I, Golden, S.S, LiWang, A.C.
登録日2002-06-23
公開日2002-11-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure and Function from the Circadian Clock Protein KaiA of Synechococcus elongatus: A potential Clock Input Mechanism
Proc.Natl.Acad.Sci.USA, 99, 2002
7RPB
DownloadVisualize
BU of 7rpb by Molmil
X-ray crystal structure of OXA-24/40 V130D in complex with meropenem
分子名称: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, BICARBONATE ION, Beta-lactamase
著者Powers, R.A, Mitchell, J.M, June, C.M.
登録日2021-08-03
公開日2022-07-06
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40.
J.Biol.Chem., 298, 2022

243911

件を2025-10-29に公開中

PDB statisticsPDBj update infoContact PDBjnumon