PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1JUU	NMR Structure of a Parallel Stranded DNA Duplex at Atomic Resolution 分子名称: 5'-D(P*CP*CP*AP*TP*AP*AP*TP*TP*TP*AP*CP*C)-3', 5'-D(P*CP*CP*TP*AP*TP*TP*AP*AP*AP*TP*CP*C)-3' 著者 Parvathy, V.R, Bhaumik, S.R, Chary, K.V.R, Govil, G, Liu, K, Howard, F.B, Miles, H.T. 登録日 2001-08-28 公開日 2002-04-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR structure of a parallel-stranded DNA duplex at atomic resolution. Nucleic Acids Res., 30, 2002
5YDR	Structure of DNMT1 RFTS domain in complex with ubiquitin 分子名称: DNA (cytosine-5)-methyltransferase 1, PHOSPHATE ION, Polyubiquitin-B, ... 著者 Qian, C. 登録日 2017-09-14 公開日 2018-02-21 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Structural and mechanistic insights into UHRF1-mediated DNMT1 activation in the maintenance DNA methylation. Nucleic Acids Res., 46, 2018
5WVO	Crystal structure of DNMT1 RFTS domain in complex with K18/K23 mono-ubiquitylated histone H3 分子名称: DNA (cytosine-5)-methyltransferase 1, Histone H3.1, Ubiquitin, ... 著者 Ishiyama, S, Nishiyama, A, Nakanishi, M, Arita, K. 登録日 2016-12-28 公開日 2017-11-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.997 Å) 主引用文献 Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance Mol. Cell, 68, 2017
3K77	X-ray crystal structure of XRCC1 分子名称: DNA repair protein XRCC1 著者 Cuneo, M.J, London, R.E. 登録日 2009-10-12 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.597 Å) 主引用文献 Oxidation state of the XRCC1 N-terminal domain regulates DNA polymerase beta binding affinity. Proc.Natl.Acad.Sci.USA, 107, 2010
4NCI	Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation 分子名称: DNA double-strand break repair Rad50 ATPase 著者 Classen, S, Williams, G.J, Arvai, A.S, Williams, R.S. 登録日 2013-10-24 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J., 33, 2014
4BA9	The structural basis for the coordination of Y-family Translesion DNA Polymerases by Rev1 分子名称: DNA POLYMERASE KAPPA, DNA REPAIR PROTEIN REV1, MAGNESIUM ION, ... 著者 Grummitt, C.G, Kilkenny, M.L, Frey, A, Roe, S.M, Oliver, A.W, Sale, J.E, Pearl, L.H. 登録日 2012-09-12 公開日 2013-09-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 The Structural Basis for the Coordination of Y- Family Translesion DNA Polymerases by Rev1 To be Published
4NCH	Crystal Structure of Pyrococcus furiosis Rad50 L802W mutation 分子名称: DNA double-strand break repair Rad50 ATPase, SULFATE ION 著者 Classen, S, Williams, G.J, Arvai, A.S, Williams, R.S. 登録日 2013-10-24 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J., 33, 2014
1B04	STRUCTURE OF THE ADENYLATION DOMAIN OF AN NAD+ DEPENDENT LIGASE 分子名称: PROTEIN (DNA LIGASE) 著者 Singleton, M.R, Hakansson, K, Timson, D.J, Wigley, D.B. 登録日 1998-11-16 公開日 1999-11-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the adenylation domain of an NAD+-dependent DNA ligase. Structure Fold.Des., 7, 1999
1A8W	A K+ CATION-INDUCED CONFORMATIONAL SWITCH WITHIN A LOOP SPANNING SEGMENT OF A DNA QUADRUPLEX CONTAINING G-G-G-C REPEATS, NMR, 8 STRUCTURES 分子名称: DNA QUADRUPLEX CONTAINING GGGG TETRADS AND GC WATSON-CRICK BASE PAIRS 著者 Bouaziz, S, Kettani, A, Patel, D.J. 登録日 1998-03-28 公開日 1998-10-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats. J.Mol.Biol., 282, 1998
4R6M	Crystal Structure of DNA Duplex Containing Two Consecutive Mercury-mediated Base Pairs 分子名称: DNA (5'-D(P*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION 著者 Xu, C.Y, Yu, F, Wang, L.H, Zhao, Y, Lin, T, Fan, C.H, He, J.H. 登録日 2014-08-26 公開日 2015-09-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.357 Å) 主引用文献 Crystal Structure of DNA Duplex Containing Two Consecutive Mercury-mediated Base Pairs To be Published
7F2F	The complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae. 分子名称: DNA (5'-D(*CP*AP*GP*AP*TP*CP*AP*TP*GP*TP*GP*TP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*AP*CP*AP*CP*AP*TP*GP*AP*TP*CP*T)-3'), Serine-rich protein TYE7 著者 Gui, W. 登録日 2021-06-10 公開日 2021-10-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of the complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae. Acta Crystallogr.,Sect.F, 77, 2021
7D32	The TBA-Pb2+ complex in P41212 space group 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION 著者 Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H. 登録日 2020-09-18 公開日 2021-09-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.707 Å) 主引用文献 Structure-guided development of Pb 2+ -binding DNA aptamers. Sci Rep, 12, 2022
7D31	The TBA-Pb2+ complex in P41212 space group 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION 著者 Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H. 登録日 2020-09-18 公開日 2021-09-22 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.396 Å) 主引用文献 Structure-guided development of Pb 2+ -binding DNA aptamers. Sci Rep, 12, 2022
7D33	The Pb2+ complexed structure of TBA G8C mutant 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*CP*TP*GP*GP*TP*TP*GP*G)-3'), LEAD (II) ION 著者 Liu, H.H, Gao, Y.Q, Sheng, J, Gan, J.H. 登録日 2020-09-18 公開日 2021-09-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.117 Å) 主引用文献 Structure-guided development of Pb 2+ -binding DNA aptamers. Sci Rep, 12, 2022
1HO6	CHIMERIC ARABINONUCLEIC ACID (ANA) HAIRPIN WITH ANA/RNA HYBRID STEM 分子名称: DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*G)-(P*(GAO)P*(UAR)P*(CAR)P*(CAR)-3') 著者 Denisov, A.Y, Gehring, K. 登録日 2000-12-08 公開日 2001-11-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids. Nucleic Acids Res., 29, 2001
2LSY	Structure of the C-terminal domain from human REV1 分子名称: DNA repair protein REV1 著者 Pozhidaeva, A, Pustovalova, Y, Bezsonova, I, Korzhnev, D. 登録日 2012-05-09 公開日 2012-06-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure and dynamics of the C-terminal domain from human Rev1 and its complex with Rev1 interacting region of DNA polymerase eta. Biochemistry, 51, 2012
1AC7	STRUCTURAL FEATURES OF THE DNA HAIRPIN D(ATCCTAGTTATAGGAT): THE FORMATION OF A G-A BASE PAIR IN THE LOOP, NMR, 10 STRUCTURES 分子名称: DNA (5'-D(*AP*TP*CP*CP*TP*AP*GP*TP*TP*AP*TP*AP*GP*GP*AP*T)-3') 著者 Van Dongen, M.J.P, Mooren, M.M.W, Willems, E.F.A, Van Der Marel, G.A, Van Boom, J.H, Wijmenga, S.S, Hilbers, C.W. 登録日 1997-02-14 公開日 1997-07-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural features of the DNA hairpin d(ATCCTA-GTTA-TAGGAT): formation of a G-A base pair in the loop. Nucleic Acids Res., 25, 1997
1BAE	STRUCTURE OF DNA (5'-D 5MCCTTTACC-3')2, NMR, 1 STRUCTURE 分子名称: DNA (5'-D(*MCYP*CP*TP*TP*TP*AP*CP*C)-3') 著者 Nonin, S, Tuan, A.P, Leroy, J.L. 登録日 1997-07-28 公開日 1998-01-14 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Solution structure and base pair opening kinetics of the i-motif dimer of d(5mCCTTTACC): a noncanonical structure with possible roles in chromosome stability. Structure, 5, 1997
2L8I	A biocompatible backbone modification? - Structure and dynamics of a triazole-linked DNA duplex 分子名称: DNA (5'-D(*CP*GP*AP*CP*G*(2L8)P*TP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*AP*AP*AP*CP*GP*TP*CP*G)-3') 著者 El-Sagheer, A, Brown, T, Ernsting, N, Dehmel, L, Griesinger, C, Mugge, C. 登録日 2011-01-13 公開日 2011-12-28 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and Dynamics of Triazole-Linked DNA: Biocompatibility Explained. Chemistry, 17, 2011
2LUJ	Solution structure of a parallel-stranded oligoisoguanine DNA pentaplex formed by d(T(iG)4T) in the presence of Cs ions 分子名称: DNA (5'-D(*TP*(IGU)P*(IGU)P*(IGU)P*(IGU)P*T)-3') 著者 Kang, M, Heuberger, B, Chaput, J.C, Switzer, C, Feigon, J. 登録日 2012-06-14 公開日 2012-07-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a Parallel-Stranded Oligoisoguanine DNA Pentaplex Formed by d(T(iG)4T) in the Presence of Cs(+) Ions. Angew.Chem.Int.Ed.Engl., 51, 2012
1FJB	NMR Study of an 11-Mer DNA Duplex Containing 7,8-Dihydro-8-Oxoadenine (AOXO) Opposite Thymine 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*(A38)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3') 著者 Chen, H, Johnson, F, Grollman, A.P, Patel, D.J. 登録日 1995-12-15 公開日 1996-06-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural Studies of the Ionizing Radiation Adduct 7,8-Dihydro-8-Oxoadenine (A Oxo) Positioned Opposite Thymine and Guanine in DNA Duplexes MAGN.RESON.CHEM., 34, 1996
4LRV	Crystal structure of DndE from Escherichia coli B7A involved in DNA phosphorothioation modification 分子名称: DNA sulfur modification protein DndE 著者 Hu, W, Wang, C.K, Liang, J.D, Zhang, T.L, Yang, M, Hu, Z.P, Wang, Z.J, Lan, W.X, Wu, H.M, Ding, J.P, Wu, G, Deng, Z.X, Cao, C. 登録日 2013-07-21 公開日 2013-08-28 最終更新日 2013-09-04 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification Cell Res., 22, 2012
2MUT	Solution structure of the F231L mutant ERCC1-XPF dimerization region 分子名称: DNA excision repair protein ERCC-1, DNA repair endonuclease XPF 著者 Faridounnia, M, Wienk, H, Kovacic, L, Folkers, G.E, Jaspers, N.G.J, Kaptein, R, Hoeijmakers, J.H.J, Boelens, R. 登録日 2014-09-17 公開日 2015-06-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Cerebro-oculo-facio-skeletal Syndrome Point Mutation F231L in the ERCC1 DNA Repair Protein Causes Dissociation of the ERCC1-XPF Complex. J.Biol.Chem., 290, 2015
2M2I	NMR solution structure of BRCT domain of yeast REV1 分子名称: DNA repair protein REV1 著者 Pustovalova, Y, Maciejewski, M.W, Korzhnev, D.M. 登録日 2012-12-21 公開日 2013-01-16 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR mapping of PCNA interaction with translesion synthesis DNA polymerase Rev1 mediated by Rev1-BRCT domain. J.Mol.Biol., 425, 2013
2M6W	Solution NMR structure of the d(GGGGTTGGGGTTTTGGGGAAGGGG) quadruplex in sodium conditions 分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3') 著者 Karsisiotis, A.I, Webba da Silva, M. 登録日 2013-04-19 公開日 2014-07-23 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Encoding canonical DNA quadruplex structure. Sci Adv, 4, 2018

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