7VQW
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![BU of 7vqw by Molmil](/molmil-images/mine/7vqw) | de novo designed protein based on 1r26 | 分子名称: | de novo designed protein | 著者 | Zhang, L. | 登録日 | 2021-10-20 | 公開日 | 2022-06-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.45 Å) | 主引用文献 | Rotamer-free protein sequence design based on deep learning and self-consistency. Nat Comput Sci, 2023
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7UDM
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![BU of 7udm by Molmil](/molmil-images/mine/7udm) | Crystal structure of designed helical repeat protein RPB_PLP1_R6 in alternative conformation 1 (with peptide) | 分子名称: | 6xPLP, Designed helical repeat protein (DHR) RPB_PLP1_R6 | 著者 | Chang, Y, Redler, R.L, Bhabha, G, Ekiert, D.C. | 登録日 | 2022-03-20 | 公開日 | 2023-03-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | De novo design of modular peptide-binding proteins by superhelical matching. Nature, 616, 2023
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7UDO
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![BU of 7udo by Molmil](/molmil-images/mine/7udo) | Crystal structure of designed helical repeat protein RPB_LRP2_R4 (proteolysis fragment?), forming pseudopolymeric filaments | 分子名称: | 1,2-ETHANEDIOL, Designed helical repeat protein (DHR) RPB_LRP2_R4, PHOSPHATE ION | 著者 | Redler, R.L, Chang, Y, Bhabha, G, Ekiert, D.C. | 登録日 | 2022-03-20 | 公開日 | 2023-03-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | De novo design of modular peptide-binding proteins by superhelical matching. Nature, 616, 2023
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7UE2
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![BU of 7ue2 by Molmil](/molmil-images/mine/7ue2) | |
2K6R
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![BU of 2k6r by Molmil](/molmil-images/mine/2k6r) | Protein folding on a highly rugged landscape: Experimental observation of glassy dynamics and structural frustration | 分子名称: | Full Sequence Design 1 Synthetic Superstable | 著者 | Sadqi, M, de Alba, E, Perez-Jimenez, R, Sanchez-Ruiz, J.M, Munoz, V. | 登録日 | 2008-07-18 | 公開日 | 2009-06-16 | 最終更新日 | 2016-06-08 | 実験手法 | SOLUTION NMR | 主引用文献 | A designed protein as experimental model of primordial folding Proc.Natl.Acad.Sci.USA, 106, 2009
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5TGY
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![BU of 5tgy by Molmil](/molmil-images/mine/5tgy) | NMR structure of holo-PS1 | 分子名称: | PS1, [5,10,15,20-tetrakis(trifluoromethyl)porphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]zinc | 著者 | Polizzi, N.F, Wu, Y. | 登録日 | 2016-09-28 | 公開日 | 2017-08-09 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | De novo design of a hyperstable non-natural protein-ligand complex with sub- angstrom accuracy. Nat Chem, 9, 2017
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5TGW
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![BU of 5tgw by Molmil](/molmil-images/mine/5tgw) | NMR structure of apo-PS1 | 分子名称: | PS1 | 著者 | Polizzi, N.F, Wu, Y. | 登録日 | 2016-09-28 | 公開日 | 2017-08-09 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | De novo design of a hyperstable non-natural protein-ligand complex with sub- angstrom accuracy. Nat Chem, 9, 2017
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7VTY
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![BU of 7vty by Molmil](/molmil-images/mine/7vty) | de novo designed protein | 分子名称: | de novo designed protein | 著者 | Zhang, L. | 登録日 | 2021-10-31 | 公開日 | 2022-06-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Rotamer-free protein sequence design based on deep learning and self-consistency. Nat Comput Sci, 2023
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6XS7
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![BU of 6xs7 by Molmil](/molmil-images/mine/6xs7) | Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D2 | 分子名称: | 48V-DTY-THR-THR-ILE-TYR-TRP-THR-PRO-LEU-GLY-THR-PHE-PRO-ARG-ILE-ARG, FORMIC ACID, GLYCEROL, ... | 著者 | Chen, K.-E, Guo, Q, Collins, B.M. | 登録日 | 2020-07-15 | 公開日 | 2021-07-14 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
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6XSA
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![BU of 6xsa by Molmil](/molmil-images/mine/6xsa) | Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L2 | 分子名称: | 48V-TYR-LEU-PRO-THR-ILE-THR-GLY-VAL-GLY-HIS-LEU-TRP-HIS-PRO-LEU, SULFATE ION, Vacuolar protein sorting-associated protein 29 | 著者 | Chen, K.-E, Guo, Q, Collins, B.M. | 登録日 | 2020-07-15 | 公開日 | 2021-07-14 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.83 Å) | 主引用文献 | De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
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6XS5
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![BU of 6xs5 by Molmil](/molmil-images/mine/6xs5) | Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1 | 分子名称: | 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG, FORMIC ACID, GLYCEROL, ... | 著者 | Chen, K.-E, Guo, Q, Collins, B.M. | 登録日 | 2020-07-15 | 公開日 | 2021-07-14 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.01 Å) | 主引用文献 | De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
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6XS8
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![BU of 6xs8 by Molmil](/molmil-images/mine/6xs8) | Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic peptide RT-D3 | 分子名称: | 48V-DTY-GLY-TYR-ASP-PRO-LEU-GLY-LEU-LYS-TYR-PHE-ALA, Vacuolar protein sorting-associated protein 29 | 著者 | Chen, K.-E, Guo, Q, Collins, B.M. | 登録日 | 2020-07-15 | 公開日 | 2021-07-14 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.95009851 Å) | 主引用文献 | De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
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6XS9
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![BU of 6xs9 by Molmil](/molmil-images/mine/6xs9) | Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L1 | 分子名称: | 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 48V-TYR-ILE-LYS-THR-PRO-LEU-GLY-THR-PHE-PRO-ASN-ARG-HIS-GLY, GLYCEROL, ... | 著者 | Chen, K.-E, Guo, Q, Collins, B.M. | 登録日 | 2020-07-15 | 公開日 | 2021-07-21 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.69 Å) | 主引用文献 | De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
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7RRO
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![BU of 7rro by Molmil](/molmil-images/mine/7rro) | Structure of the 48-nm repeat doublet microtubule from bovine tracheal cilia | 分子名称: | Armadillo repeat containing 4, Chromosome 3 C1orf194 homolog, Cilia and flagella associated protein 161, ... | 著者 | Gui, M, Anderson, J.R, Botsch, J.J, Meleppattu, S, Singh, S.K, Zhang, Q, Brown, A. | 登録日 | 2021-08-10 | 公開日 | 2021-10-27 | 最終更新日 | 2024-06-05 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | De novo identification of mammalian ciliary motility proteins using cryo-EM. Cell, 184, 2021
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8TO0
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![BU of 8to0 by Molmil](/molmil-images/mine/8to0) | 48-nm repeating structure of doublets from mouse sperm flagella | 分子名称: | Cilia- and flagella- associated protein 210, Cilia- and flagella-associated protein 107, Cilia- and flagella-associated protein 141, ... | 著者 | Chen, Z, Shiozak, M, Hass, K.M, Skinner, W, Zhao, S, Guo, C, Polacco, B.J, Yu, Z, Krogan, N.J, Kaake, R.M, Vale, R.D, Agard, D.A. | 登録日 | 2023-08-02 | 公開日 | 2023-11-01 | 最終更新日 | 2023-11-22 | 実験手法 | ELECTRON MICROSCOPY (7.7 Å) | 主引用文献 | De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking. Cell, 186, 2023
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5DOU
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![BU of 5dou by Molmil](/molmil-images/mine/5dou) | Crystal Structure of Human Carbamoyl phosphate synthetase I (CPS1), ligand-bound form | 分子名称: | 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ... | 著者 | de Cima, S, Polo, L.M, Fita, I, Rubio, V. | 登録日 | 2015-09-11 | 公開日 | 2015-12-09 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis. Sci Rep, 5, 2015
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5I30
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![BU of 5i30 by Molmil](/molmil-images/mine/5i30) | |
6L9X
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![BU of 6l9x by Molmil](/molmil-images/mine/6l9x) | Xenons in frog EPDR1 | 分子名称: | Ependymin-related 1, XENON | 著者 | Park, S. | 登録日 | 2019-11-11 | 公開日 | 2020-11-11 | 最終更新日 | 2021-05-26 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | De novo Phasing Xenons Observed in the Frog Ependymin-Related Protein Crystals, 10, 2020
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7UXO
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![BU of 7uxo by Molmil](/molmil-images/mine/7uxo) | Structure of PDL1 in complex with FP30790, a Helicon Polypeptide | 分子名称: | AMINO GROUP, FP30790, N,N'-(1,4-phenylene)diacetamide, ... | 著者 | Li, K, Agarwal, S, Tokareva, O, Thomson, T, Travaline, T, Tattersfield, H, Wahl, S, Verdine, G, McGee, J. | 登録日 | 2022-05-05 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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7UYK
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![BU of 7uyk by Molmil](/molmil-images/mine/7uyk) | Structure of RNF31 in complex with FP06655, a Helicon Polypeptide | 分子名称: | AMINO GROUP, E3 ubiquitin-protein ligase RNF31, Helicon FP06655, ... | 著者 | Agarwal, S, Thomson, T, Wahl, S, Walkup, W, Olsen, T, Verdine, G, McGee, J. | 登録日 | 2022-05-06 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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7UWI
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![BU of 7uwi by Molmil](/molmil-images/mine/7uwi) | Structure of beta-catenin in complex with FP01567, a Helicon Polypeptide | 分子名称: | Catenin beta-1, GLYCEROL, Helicon Polypeptide FP01567, ... | 著者 | Brennan, M, Agarwal, S, Thomson, T, Wahl, S, Ramirez, J, Verdine, G, McGee, J. | 登録日 | 2022-05-03 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.32 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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7UXQ
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![BU of 7uxq by Molmil](/molmil-images/mine/7uxq) | Structure of PDL1 in complex with FP28135, a Helicon Polypeptide | 分子名称: | 1,2-ETHANEDIOL, FP28135, N,N'-(1,4-phenylene)diacetamide, ... | 著者 | Li, K, Agarwal, S, Tokareva, O, Thomson, T, Travaline, T, Wahl, S, Verdine, G, McGee, J. | 登録日 | 2022-05-05 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.89 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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7UWO
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![BU of 7uwo by Molmil](/molmil-images/mine/7uwo) | Structure of beta-catenin in complex with FP05874, a Helicon Polypeptide | 分子名称: | Catenin beta-1, Helicon Polypeptide FP05874, N,N'-(1,4-phenylene)diacetamide | 著者 | Agarwal, S, Thomson, T, Wahl, S, Ramirez, J, Hriniak, B, Verdine, G, McGee, J. | 登録日 | 2022-05-03 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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7UXK
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![BU of 7uxk by Molmil](/molmil-images/mine/7uxk) | Structure of CDK2 in complex with FP24322, a Helicon Polypeptide | 分子名称: | 1,2-ETHANEDIOL, Cyclin-dependent kinase 2, FP24322, ... | 著者 | Li, K, Agarwal, S, Tokareva, O, Thomson, T, Wahl, S, Verdine, G, McGee, J. | 登録日 | 2022-05-05 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.63 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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7UXP
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![BU of 7uxp by Molmil](/molmil-images/mine/7uxp) | Structure of PDL1 in complex with FP28132, a Helicon Polypeptide | 分子名称: | AMINO GROUP, FP28132, N,N'-(1,4-phenylene)diacetamide, ... | 著者 | Li, K, Agarwal, S, Tokareva, O, Thomson, T, Travaline, T, Tattersfield, H, Wahl, S, Verdine, G, McGee, J. | 登録日 | 2022-05-05 | 公開日 | 2022-12-28 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.62 Å) | 主引用文献 | De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA, 119, 2022
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