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2FDC
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BU of 2fdc by Molmil
Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex
分子名称: 5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3', N-[6-(ACETYLAMINO)HEXYL]-3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-6-CARBOXAMIDE, UvrABC system protein B
著者Truglio, J.J, Kisker, C.
登録日2005-12-13
公開日2006-03-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis for DNA recognition and processing by UvrB.
Nat.Struct.Mol.Biol., 13, 2006
4R28
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BU of 4r28 by Molmil
MspJI Restriction Endonuclease in Complex with 27-mer Oligonucleotide
分子名称: DNA (25-MER), DNA (26-MER), Restriction endonuclease
著者Horton, J.R, Cheng, X.
登録日2014-08-10
公開日2014-10-08
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.055 Å)
主引用文献Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.
Nucleic Acids Res., 42, 2014
346D
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BU of 346d by Molmil
STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
分子名称: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*(5CM)P*GP*C)-3')
著者Mooers, B.H.M, Eichman, B.F, Ho, P.S.
登録日1997-08-26
公開日1997-08-29
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA
To be Published
2N9H
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BU of 2n9h by Molmil
Glucose as a nuclease mimic in DNA
分子名称: DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3')
著者Gomez-Pinto, I, Vengut-Climent, E, Lucas, R, Avino, A, Eritja, R, Gonzalez-Ibanez, C, Morales, J, Muro, A, Penalver, P, Fonseca-Guerra, C, Bickelhaupt, M.
登録日2015-11-25
公開日2016-08-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Glucose-Nucleobase Pseudo Base Pairs: Biomolecular Interactions within DNA.
Angew.Chem.Int.Ed.Engl., 55, 2016
2H56
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BU of 2h56 by Molmil
Crystal structure of DNA-3-methyladenine glycosidase (10174367) from Bacillus halodurans at 2.55 A resolution
分子名称: DNA-3-methyladenine glycosidase
著者Joint Center for Structural Genomics (JCSG)
登録日2006-05-25
公開日2006-07-25
最終更新日2023-01-25
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of DNA-3-methyladenine glycosidase (10174367) from Bacillus halodurans at 2.55 A resolution
To be published
1DA2
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BU of 1da2 by Molmil
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO4CG): N4-METHOXYCYTOSINE/GUANINE BASE-PAIRS IN Z-DNA
分子名称: DNA (5'-D(*CP*GP*CP*GP*(C45)P*G)-3')
著者Van Meervelt, L, Moore, M.H, Lin, P.K.T, Brown, D.M, Kennard, O.
登録日1992-10-17
公開日1993-07-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular and crystal structure of d(CGCGmo4CG): N4-methoxycytosine.guanine base-pairs in Z-DNA.
J.Mol.Biol., 216, 1990
7OGG
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BU of 7ogg by Molmil
Nse5/6 complex
分子名称: DNA repair protein KRE29,DNA repair protein KRE29,DNA repair protein KRE29, Non-structural maintenance of chromosome element 5,Non-structural maintenance of chromosome element 5,Non-structural maintenance of chromosome element 5
著者Basquin, J, Taschner, M, Gruber, S.
登録日2021-05-06
公開日2021-07-07
最終更新日2021-08-11
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding.
Embo J., 40, 2021
5ZMD
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BU of 5zmd by Molmil
Crystal structure of FTO in complex with m6dA modified ssDNA
分子名称: Alpha-ketoglutarate-dependent dioxygenase FTO, DNA (5'-D(P*TP*CP*TP*(6MA)P*TP*AP*TP*CP*G)-3'), MANGANESE (II) ION, ...
著者Zhang, X, Wei, L.H, Luo, J, Xiao, Y, Liu, J, Zhang, W, Zhang, L, Jia, G.F.
登録日2018-04-02
公開日2019-04-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural insights into FTO's catalytic mechanism for the demethylation of multiple RNA substrates.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
4IZQ
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BU of 4izq by Molmil
GGGCATGCCC in the A-DNA Form
分子名称: DNA (5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*C)-3')
著者Hall, J.P, Ruiz-Morte, S, Murray, C.A, Cardin, C.J.
登録日2013-01-30
公開日2014-02-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献GGGCATGCCC in the A-DNA Form
To be Published
1D59
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BU of 1d59 by Molmil
CRYSTAL STRUCTURE OF 4-STRANDED OXYTRICHA TELOMERIC DNA
分子名称: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3')
著者Kang, C, Zhang, X, Ratliff, R, Moyzis, R, Rich, A.
登録日1992-02-25
公開日1993-04-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of four-stranded Oxytricha telomeric DNA.
Nature, 356, 1992
8KGL
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BU of 8kgl by Molmil
Structure of African swine fever virus topoisomerase II
分子名称: DNA topoisomerase 2
著者Cong, J, Xin, Y, Li, X, Chen, Y.
登録日2023-08-19
公開日2024-04-03
最終更新日2024-08-14
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun, 15, 2024
8K0Q
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BU of 8k0q by Molmil
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state
分子名称: DNA, MAGNESIUM ION, RNA (542-MER)
著者Zhu, H.Z, Liu, J.J.G.
登録日2023-07-10
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage.
Science, 383, 2024
8K0R
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BU of 8k0r by Molmil
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
分子名称: DNA, MAGNESIUM ION, RNA (542-MER)
著者Zhu, H.Z, Liu, J.J.G.
登録日2023-07-10
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage.
Science, 383, 2024
6WQ2
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BU of 6wq2 by Molmil
Cryo-EM of the S. islandicus filamentous virus, SIFV
分子名称: A-DNA, Structural protein MCP1, Structural protein MCP2
著者Wang, F, Baquero, D.P, Su, Z, Zheng, W, Prangishvili, D, Krupovic, M, Egelman, E.H.
登録日2020-04-28
公開日2020-07-29
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.
Proc.Natl.Acad.Sci.USA, 117, 2020
1Q8I
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BU of 1q8i by Molmil
Crystal structure of ESCHERICHIA coli DNA Polymerase II
分子名称: DNA polymerase II
著者Brunzelle, J.S, Muchmore, C.R.A, Mashhoon, N, Blair-Johnson, M, Shuvalova, L, Goodman, M.F, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
登録日2003-08-21
公開日2004-01-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Escherichia Coli DNA Polymerase II
To be Published
2KUZ
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BU of 2kuz by Molmil
2-Aminopurine incorporation perturbs the dynamics and structure of DNA
分子名称: DNA (5'-D(*CP*GP*AP*CP*GP*TP*TP*TP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*AP*AP*AP*CP*GP*TP*CP*G)-3')
著者Dallmann, A, Dehmel, L, Peters, T, Muegge, C, Griesinger, C.P, Tuma, J, Ernsting, N.P.
登録日2010-03-03
公開日2010-07-28
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献2-aminopurine incorporation perturbs the dynamics and structure of DNA.
Angew.Chem.Int.Ed.Engl., 49, 2010
2KV0
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BU of 2kv0 by Molmil
2-Aminopurine incorporation perturbs the dynamics and structure of DNA
分子名称: DNA (5'-D(*CP*GP*AP*CP*GP*TP*TP*TP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*AP*(2PR)P*AP*CP*GP*TP*CP*G)-3')
著者Dallmann, A, Dehmel, L, Peters, T, Muegge, C, Griesinger, C.P, Tuma, J, Ernsting, N.P.
登録日2010-03-03
公開日2011-01-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献2-Aminopurine incorporation perturbs the dynamics and structure of DNA.
Angew.Chem.Int.Ed.Engl., 49, 2010
3P83
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BU of 3p83 by Molmil
Structure of the PCNA:RNase HII complex from Archaeoglobus fulgidus.
分子名称: DNA polymerase sliding clamp, Ribonuclease HII
著者Bubeck, D, Reijns, M.A, Graham, S.C, Astell, K.R, Jones, E.Y, Jackson, A.P.
登録日2010-10-13
公開日2011-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献PCNA directs type 2 RNase H activity on DNA replication and repair substrates.
Nucleic Acids Res., 39, 2011
2L1P
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BU of 2l1p by Molmil
NMR solution structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens: Northeast Structural Genomics Target HR4435B(179-250)
分子名称: DNA-binding protein SATB1
著者Swapna, G.V.T, Montelione, A.F, Shastry, R, Ciccosanti, C, Janjua, H, Xiao, R, Acton, T.B, Everett, J.K, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2010-08-02
公開日2010-09-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structure of the N-terminal domain of DNA-binding protein SATB1 from Homo sapiens: Northeast Structural Genomics Target HR4435B(179-250)
To be Published
4GDF
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BU of 4gdf by Molmil
A Crystal Structure of SV40 Large T Antigen
分子名称: DNA (32-MER), Large T antigen, ZINC ION
著者Chang, Y.P, Xu, M, Chen, X.S.
登録日2012-07-31
公開日2013-04-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Mechanism of Origin DNA Recognition and Assembly of an Initiator-Helicase Complex by SV40 Large Tumor Antigen.
Cell Rep, 3, 2013
2MJJ
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BU of 2mjj by Molmil
A tetrahelical DNA fold adopted by alternating GGG and GCG tracts
分子名称: 5'-D(*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*G)-3'
著者Kocman, V, Plavec, J.
登録日2014-01-10
公開日2014-12-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A tetrahelical DNA fold adopted by tandem repeats of alternating GGG and GCG tracts.
Nat Commun, 5, 2014
340D
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BU of 340d by Molmil
STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
分子名称: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3')
著者Mooers, B.H.M, Eichman, B.F, Ho, P.S.
登録日1997-06-26
公開日1997-07-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA
To be Published
7KWR
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BU of 7kwr by Molmil
1,N6-ethenoadnine (E) in dsDNA sequence (5'-CGCGEATTCGCG-3')
分子名称: DNA (5'-D(*(DCZ)P*GP*CP*GP*(EDA)P*AP*TP*TP*CP*GP*CP*G)-3')
著者Meints, G.A, Ljunggren, K.D.
登録日2020-12-01
公開日2021-12-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Single Base Lesions and Mismatches Alter the Backbone Dynamics and Conformational Properties in DNA
To Be Published
8Q5Q
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BU of 8q5q by Molmil
d(ATTTC)3 dimeric structure
分子名称: DNA (5'-D(*AP*TP*TP*TP*(DNR)P*AP*TP*TP*TP*CP*AP*TP*TP*TP*C)-3')
著者Trajkovski, M, Pastore, A, Plavec, J.
登録日2023-08-09
公開日2024-02-07
最終更新日2024-03-06
実験手法SOLUTION NMR
主引用文献Dimeric structures of DNA ATTTC repeats promoted by divalent cations.
Nucleic Acids Res., 52, 2024
341D
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BU of 341d by Molmil
STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
分子名称: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3')
著者Mooers, B.H.M, Eichman, B.F, Ho, P.S.
登録日1997-06-26
公開日1997-07-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Parameters from Single-Crystal Structures For Accurate Models of A-DNA
To be Published

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件を2024-09-04に公開中

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