PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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339D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA 分子名称: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*(5CM)P*GP*C)-3') 著者 Mooers, B.H.M, Eichman, B.F, Ho, P.S. 登録日 1997-06-26 公開日 1997-07-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
1FKZ	NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES 分子名称: DNA (5'-D(*GP*AP*GP*CP*TP*CP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3') 著者 Boulard, Y, Cognet, J.A.H, Fazakerley, G.V. 登録日 1996-10-09 公開日 1997-03-12 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. J.Mol.Biol., 268, 1997
1FQ2	CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCG 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE 著者 Williams, L.D, Sines, C.C, McFail-Isom, L, Howerton, S.B, VanDerveer, D. 登録日 2000-09-01 公開日 2000-11-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Cations Mediate B-DNA Conformational Heterogeneity J.Am.Chem.Soc., 122, 2000
345D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA 分子名称: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') 著者 Mooers, B.H.M, Eichman, B.F, Ho, P.S. 登録日 1997-08-15 公開日 1997-08-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
342D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA 分子名称: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*(5CM)P*GP*C)-3') 著者 Mooers, B.H.M, Eichman, B.F, Ho, P.S. 登録日 1997-06-26 公開日 1997-07-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
2N7E	Solution structure of the UBL domain of yeast Ddi1 分子名称: DNA damage-inducible protein 1 著者 Siva, M, Grantz Saskova, K, Veverka, V. 登録日 2015-09-09 公開日 2016-07-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family. Sci Rep, 6, 2016
2N0Q	N2-dG-IQ modified DNA at the G1 position of the NarI recognition sequence 分子名称: DNA_(5'-D(*CP*TP*CP*(IQG)P*GP*CP*GP*CP*CP*AP*TP*C)-3'), DNA_(5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3') 著者 Stavros, K, Hawkins, E, Rizzo, C, Stone, M. 登録日 2015-03-11 公開日 2015-08-19 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Base-Displaced Intercalated Conformation of the 2-Amino-3-methylimidazo[4,5-f]quinoline N(2)-dG DNA Adduct Positioned at the Nonreiterated G(1) in the NarI Restriction Site. Chem.Res.Toxicol., 28, 2015
2IE1	Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography 分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE 著者 Ohishi, H, Odoko, M, Tsukamoto, K, Hiyama, Y, Maezaki, N, Grzeskowiak, K, Ishida, T, Tanaka, T, Okabe, N, Fukuyama, K. 登録日 2006-09-16 公開日 2007-10-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography To be Published
6V1W	NMR Structure of C-terminal Domain of phi29 ATPase 分子名称: DNA packaging protein 著者 Mahler, B, Mao, H, Morais, M.C. 登録日 2019-11-21 公開日 2020-09-30 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure of a vestigial nuclease provides insight into the evolution of functional transitions in viral dsDNA packaging motors. Nucleic Acids Res., 48, 2020
7OW0	1.55 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex with overhangs solved by Zn-SAD. 分子名称: DNA (5'-D(*TP*CP*TP*CP*CP*TP*AP*GP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), ZINC ION 著者 Dolot, R.M, Maciaszek, A, Nawrot, B.C. 登録日 2021-06-15 公開日 2021-07-14 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
7RAY	Crystal structure of MBD2 with DNA 分子名称: DNA (5'-D(*GP*CP*CP*AP*A)-R(P*(5MC))-D(P*GP*TP*TP*GP*GP*C)-3'), Methyl-CpG-binding domain protein 2, UNKNOWN ATOM OR ION 著者 Liu, K, Dong, A, Loppnau, P, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC) 登録日 2021-07-05 公開日 2021-07-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Crystal structure of MBD2 with DNA To Be Published
1FKY	NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES 分子名称: DNA (5'-D(*GP*AP*GP*CP*TP*TP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3') 著者 Boulard, Y, Cognet, J.A.H, Fazakerley, G.V. 登録日 1996-10-09 公開日 1997-04-01 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. J.Mol.Biol., 268, 1997
7OU4	The structure of MutS bound to one molecule of ATP and one molecule of ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein MutS, ... 著者 Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. 登録日 2021-06-11 公開日 2022-01-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
7OU0	The structure of MutS bound to two molecules of ADP-Vanadate 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS, MAGNESIUM ION, ... 著者 Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. 登録日 2021-06-10 公開日 2022-01-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
7OU2	The structure of MutS bound to two molecules of ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS 著者 Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. 登録日 2021-06-11 公開日 2022-01-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
4RKI	Crystal structure of sliding beta clamp from Helicobacter pylori 分子名称: DNA polymerase III subunit beta 著者 Satyawali, P, Tarique, K.F, Abdul Rehman, S.A, Gourinath, S. 登録日 2014-10-13 公開日 2016-01-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural insight into beta-Clamp and its interaction with DNA Ligase in Helicobacter pylori. Sci Rep, 6, 2016
4Z2Z	New crystal structure of yeast Ddi1 aspartyl protease reveals substrate engagement mode 分子名称: DNA damage-inducible protein 1 著者 Trempe, J.-F, Feng, X, Gehring, K. 登録日 2015-03-30 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family. Sci Rep, 6, 2016
3SJM	Crystal Structure Analysis of TRF2-Dbd-DNA complex 分子名称: DNA (5'-D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3'), Telomeric repeat-binding factor 2 著者 Nair, S.K, Sliverman, S.K, Chen, J.H, Xiao, Y. 登録日 2011-06-21 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Crystal Structure Analysis of TRF2-Dbd-DNA complex To be Published
2OD8	Structure of a peptide derived from Cdc9 bound to PCNA 分子名称: DNA ligase I, mitochondrial precursor, Proliferating cell nuclear antigen 著者 Chapados, B.R, Tainer, J.A. 登録日 2006-12-21 公開日 2007-05-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The C-terminal domain of yeast PCNA is required for physical and functional interactions with Cdc9 DNA ligase. Nucleic Acids Res., 35, 2007
8VNU	Homing endonuclease H98A I-PpoI-DNA complex at pH6.0 (K+ MES) with 70 mM Tl+ for 1800s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VMS	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 80s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNM	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 320s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VMU	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 320s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VN5	Homing endonuclease I-PpoI-DNA complex:ground state at pH8.0 (Tris) with Na+ 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNP	Homing endonuclease I-PpoI-DNA complex at pH6.0 (K+ MES) with 0.2 M sodium malonate 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published

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